BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56770.1
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950347 jgi|Araly1|950347|scaffold_802234.1 468 3e-131
> Ahg950347 jgi|Araly1|950347|scaffold_802234.1
Length=654
Score = 468 bits (253), Expect = 3e-131
Identities = 500/612 (82%), Gaps = 45/612 (7%)
Strand=Plus/Plus
Query 1 ATGTCGTTTGTTCTATTATCGAAGATGGCGAAGTTGAAGTTTAACCATATACGACACACA 60
|||||||||| |||||||||||||||||| | ||| ||| |||||||||||||||||||
Sbjct 28 ATGTCGTTTGGTCTATTATCGAAGATGGCTACGTTAAAGACTAACCATATACGACACACA 87
Query 61 ATCATTAGCACGCAAAAAAGCACAACCATTATGCCGGGGATAAGTC-AGCTCTTGAACAA 119
|||| | ||| |||||||| ||||||||||||||| | |||||||| || | ||||||||
Sbjct 88 ATCAGTGGCATGCAAAAAATCACAACCATTATGCCAGTGATAAGTCAAG-TGTTGAACAA 146
Query 120 TAGATTGATCGGAAAG-GAATTCAGTT-C--CG-C--CGTCCCCACTATGTTCAAGAGAG 172
||| |||||||| ||| |||||||||| | || | |||||||||||||||||||||||
Sbjct 147 TAGGTTGATCGG-AAGAGAATTCAGTTCCGTCGCCGTCGTCCCCACTATGTTCAAGAGAG 205
Query 173 AAGACTACAAGCTGACTATACACGACATCGCATT--CTCCAAATGGCGGAATCTTATAAG 230
||||||||||| ||||||| ||||| | |||| |||| | ||| || ||||| |||
Sbjct 206 AAGACTACAAGAGGACTATATACGACG-C-CATTTTCTCCGATTGGAAGATTCTTACAAG 263
Query 231 ACACAATGATTGGAAAGATTTCAATAATAGAAAAGAAAGG-GTCCGTAGATACAGACATG 289
| |||||||||||| || ||||| ||| |||||||| || |||||||||||||||||||
Sbjct 264 GCCCAATGATTGGAACGACTTCAAGAATGGAAAAGAA-GGTGTCCGTAGATACAGACATG 322
Query 290 AGGACTTACCCCCTCA-ACGTTGTACGGGTCTGTATGAGCTCGGTGTAGGC-GTCATCGG 347
|||||||||||||| | | | |||||||||| |||||||| || |||| | ||||||||
Sbjct 323 AGGACTTACCCCCT-ATATATCGTACGGGTCTATATGAGCTAGGCGTAG-CAGTCATCGG 380
Query 348 TCAAGACCA---AGGCCAAAACTTTGATCCTGATAATAATGTTCTTGGTGTATATGTCGG 404
||||||| | ||||||||| ||||||||||||||| ||||| | |||| | ||
Sbjct 381 TCAAGACGACCTAGGCCAAAAGTTTGATCCTGATAATGTTGTTCCTAC---ATATCTAGG 437
Query 405 ACAATGTGTAGACGTAAAATCAAGACTCCAGGATTATGGAAGACGCGGTGGTCATTTGCC 464
|||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 438 ACAAAGTGTAGACATGAAATCAAGACTCCAGGATTATGGAAGATGCGGTGGTCATTTGCC 497
Query 465 CTCGGGTTTATAT-GAGGACATATTCTCGGAAGGATACT-CAGTTT-TTTA--TA-G--A 516
| | |||||| | || ||| ||| |||| ||| || || || ||| |||| || | |
Sbjct 498 CGCAAGTTTAT-TCGAAGACCTATCCTCGAAAGAATTCTGCATTTTATTTAGATATGCTA 556
Query 517 TG--G-GCACC-A---G--AAGCTGCTGCAACAGAAGGGATGCTTTTGAGCACTTTTGAT 567
|| | | | | | | |||||||||||| |||||||||| ||||||| || |||||
Sbjct 557 TGATGAG-ATCTAAATGGGAAGCTGCTGCAATAGAAGGGATGATTTTGAGTACAATTGAT 615
Query 568 TATGCATGGAAC 579
||| | ||||||
Sbjct 616 TATCCGTGGAAC 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28210958580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5