BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56780.1
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950348 jgi|Araly1|950348|scaffold_802235.1 2001 0.0
> Ahg950348 jgi|Araly1|950348|scaffold_802235.1
Length=1500
Score = 2001 bits (1083), Expect = 0.0
Identities = 1344/1469 (91%), Gaps = 22/1469 (1%)
Strand=Plus/Plus
Query 1 ATGGAATTCGGCGACGGCGTTTCCTTCGCCGTCGTCCCCACTGTCTTCAAAAGAGAAGAC 60
||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 22 ATGGAATTCGGCGACGGCGGTTCATTCGCCGTCGTCCCCACTGTCTTCAAGAGAGAAGAC 81
Query 61 TACAAACGAACTAAACACGACACCGTCTTCTCCAAGTGGCAGGTACTT-ATAGGATCCAA 119
|| || || |||||||||||| |||| ||||| ||||||||||| || |||||||| ||
Sbjct 82 TATAAGCGGACTAAACACGACGCCGTTTTCTCAAAGTGGCAGGT-GTTGATAGGATCAAA 140
Query 120 CGATTGGGAAGATTTCAAAAACGGAAAAGATGGTGTAGGTAGATACAGAGTCCAGAACTT 179
||||||||| |||||| |||| || ||||||||||| ||||||||||||||||| |||||
Sbjct 141 CGATTGGGAGGATTTCCAAAATGGGAAAGATGGTGTTGGTAGATACAGAGTCCACAACTT 200
Query 180 ACCTCGTAAATCTTGTCCGGGTCTGTATGAGCTCGGTGTAGCGGTCATCGGTCAAGAACA 239
||| || |||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 201 ACCCCGCAAATCTTGCCCTGGTCTGTATGAGCTTGGTGTAGCGGTCATCGGTCAAGACCA 260
Query 240 ATGTCGAAAGCTTGAACCAGAT-ATTGTTCTTGCT-TCATATCTAGGACAAGCTGAAAGT 297
| |||||||||||||| | ||| | |||||||||| | |||||||||||||||||||||
Sbjct 261 AGGTCGAAAGCTTGAATCTGATGA-TGTTCTTGCTGT-GTATCTAGGACAAGCTGAAAGT 318
Query 298 GTTAGGTCTAGACTTCAGCGTTATGGAAGATCCGGTGCTCATTTGCGCAATGTTAACAAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GTTAGGTCTAGACTTCAGCGTTATGGAAGATCCGGTGCTCATTTGCGCAATGTTAACAAC 378
Query 358 CTTAACGACTGTGAAACTATTGAATCTCCAGTTAAG--G-CTGTTACTGGAGGTTTATTT 414
||||||||||||||||| ||||| |||||||||||| | |||| || || |||||||||
Sbjct 379 CTTAACGACTGTGAAACCATTGAGTCTCCAGTTAAGAAGGCTGTAACCGGTGGTTTATTT 438
Query 415 GAAGACATATTTTCGAAAGGAGGCTCGATTTTATACAGATGGGCTCCGATGGGATCTAAG 474
|| |||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct 439 GAGGACATATTCTCGAAACAAGGCTCGATTTTATATAGATGGGCTCCGATGAGATCTAAG 498
Query 475 AGAGAAGCTGAGGCAACAGAAGGGATGCTCTTGAGCACATTTGACTATGCTTGGAACAAA 534
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 499 AGAGAAGCTGAGGCAACAGAAGGAATGCTTTTGAGCACATTTGACTATGCTTGGAACAAA 558
Query 535 GGAAGTAACGGGGAGCGAAGGCAGCTTGATTTGCTTAAGAAGCTCGGTGATCGCGAGTTT 594
|||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 559 GGAAGTAATGGGGAGCGACGGCAGCTTGATTTACTCAAGAAGCTCGGTGATCGCGAGTTT 618
Query 595 ATGAGCAAGAGAAAGTCCGGTATATCTCGAATGCTGTTTCCTTTTCTTCGGAACCAAGTT 654
|||||||||||||||||||| ||||| ||| || |||||||||||||||| |||||||||
Sbjct 619 ATGAGCAAGAGAAAGTCCGGGATATCGCGAGTGTTGTTTCCTTTTCTTCGAAACCAAGTT 678
Query 655 GGTATCAGAATAAAAGGAGAGAAGCATGTGCTTAAAGAAGAGAGGAAGCTAACCTGTGAT 714
||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 679 GGTATCAGAATCAAAGGAGAGAAGCATGTGCTTAAAGAAGAGAGAAAGCTAAGTTGTGAT 738
Query 715 GTTGATGAAGAGAAGAGTAATAATTTCCTCACTTCAATACTCAAACTCACCCGGTCTAGA 774
||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| |||
Sbjct 739 GTTGATGAAGAGAAGAGTAATAACTTCTTCACTTCAATACTCAAACTCACCAGGTCAAGA 798
Query 775 CCTCAACCGGTTTCAGACAGATTTGATGAGGTTGATGGTTCTTGTTCTGATAT-TGTTTG 833
|||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 799 CCTCAACCGGTTTCAGACAGATTTGAAGAGGTTGATGGTTCTTGTTCTGAT-TCTGTTTG 857
Query 834 TGGAGTCTTACTTGAAGATGGTGGCTGTTGCATTAGAAGTCCAGTCAAAGGGAGAAAGAG 893
|||||||||||||||| ||||||| ||||||| ||||||||| |||||||| ||||||||
Sbjct 858 TGGAGTCTTACTTGAAAATGGTGGTTGTTGCAATAGAAGTCCTGTCAAAGGAAGAAAGAG 917
Query 894 ATGCATAGAGCATAAAGGACAGAGAGTTTGCCGTGTTTCACCCGAAAAACAGACACCGCC 953
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 918 ATGCATAGAGCATAAAGGTCAGAGAGTTTGCCGTGTTTCACCCGAAAAACAGACACCTCC 977
Query 954 A-AAGTCCGAGATTTTCACTGGACAAGATCATCACAATCATAAAGACTCTGATGTTGTGT 1012
| || ||||||||||||| |||||||||||||||||||| | ||||||||||||| |||
Sbjct 978 ACAAC-CCGAGATTTTCACCGGACAAGATCATCACAATCACAGAGACTCTGATGTTATGT 1036
Query 1013 GTGGAGTGATCTTACCTGACATGGAACCTTGCAATAAGAGACCTGTTCCTGGAAGAAAAC 1072
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTGGAGTGATCTTACCTGACATGCAACCTTGCAATAAGAGACCTGTTCCTGGAAGAAAAC 1096
Query 1073 GATGTGAGGATCATAAAGGCATGAGGATCAATGCTTTTCTTTTTCTTCTTAACCAAACTG 1132
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1097 GATGTGAGGATCATAAAGGCATGAGGATCAATGCTTTTCTCTTTCTTCTTAACCAGACAG 1156
Query 1133 ACCGTGAGAAAACCGTCAAAGACGAGAAACCTGATCCCGAATCGCATACCGAGTCAATCG 1192
| |||||||||||||| | |||||||| | || ||||| |||||||||||||||||| |
Sbjct 1157 ATCGTGAGAAAACCGTGAGAGACGAGATATCTAATCCCAAATCGCATACCGAGTCAAGGG 1216
Query 1193 AAGAAGAAGCTTTGACTCGCTTCTGTGAAGCTACAACAAAGAATGGGTTACCTTGCACAA 1252
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 AAGAAGAAGCTTCGACTCGCTTCTGTGAAGCTACAACAAAGAATGGGTTACCTTGCACAA 1276
Query 1253 GAAGTTCTCCTAAAGGAAGCAAAAGGTGTTGGCAACATAAGGAGAAAACTTCCAGCGATA 1312
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |
Sbjct 1277 GAAGTTCTCCTAAAGGAAGCAAAAGGTGTTGGCAACATAAAGAGAAAACTTCCTGCAA-A 1335
Query 1313 CT-TCGCCGGTATATTTTCAGCCAG-AGGCAGCAAAAAA-CGTAGCTTGTGGAGTTAAAT 1369
| ||||||| | || ||||||||| || | | ||||| |||||| ||||||||||| |
Sbjct 1336 CAATCGCCGGAAAATGTTCAGCCAGGAG-CTG-AAAAACTCGTAGCCTGTGGAGTTAAGT 1393
Query 1370 TAGGCAATGGATTGATCTGTGAGAGATCTCCGGTAAAAGGACGTAAGAGATGTGAAGAGC 1429
|| | ||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct 1394 TATGTAATGGATTGATCTGTGAAAGATCTCCAGTCAAAGGTCGTAAGAGGTGTGAAGAGC 1453
Query 1430 ATAAGGGAATGAGAATCA-C-CT-AACCT 1455
| |||||||||||||||| | || |||||
Sbjct 1454 ACAAGGGAATGAGAATCATCACTTAACCT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58849428525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5