BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56790.1
Length=2826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495769 jgi|Araly1|495769|fgenesh2_kg.8__1585__AT5G56790.1 4019 0.0
Ahg917508 jgi|Araly1|917508|Al_scaffold_0008_2259 100 5e-20
> Ahg495769 jgi|Araly1|495769|fgenesh2_kg.8__1585__AT5G56790.1
Length=2743
Score = 4019 bits (2176), Expect = 0.0
Identities = 2598/2788 (93%), Gaps = 83/2788 (3%)
Strand=Plus/Plus
Query 49 TATTTTAATTGTTTGGATATTTGCTTTTATCTTCTACCAAATTCCTCTGATTTTGTCGAA 108
||||||||||||||||| || |||||||||||||||||||||||||||| | |
Sbjct 26 TATTTTAATTGTTTGGACCTTAGCTTTTATCTTCTACCAAATTCCTCTGA---T-T---- 77
Query 109 GAAATTAGTAGCTGAAAATCCAAAAATCGGACTTACTTCATCAGCTTTTTGGCCCCACTT 168
||||| ||||||||| || | | |||||||||||||||||||||||||||||||
Sbjct 78 ----TTAGT---TGAAAATCC-AACACCTGACTTACTTCATCAGCTTTTTGGCCCCACTT 129
Query 169 TACAAAGTATGAGCAAGTTTTTCTTGTTTTCTACAGCAAAGCAATGCTCACACCATTTTC 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TACAAAGTATGAGCAAGTTTTTCTTGTTTTCTACAGCAAAGCAATGCTCACACCATTTTC 189
Query 229 GTGGAGCTTAAAGTCTTCAAACCCAAACTAAAAGCTTTGAAATTTCTCTGCAAGAAACag 288
||||||||||||||||||||| || ||| |||||||||||||||||| ||||| |
Sbjct 190 GTGGAGCTTAAAGTCTTCAAAACCTAAC-CAAAGCTTTGAAATTTCTCAGCAAG----A- 243
Query 289 agagagagatctagggattggctattaagagagagagagtag-agTACTACACTATTGGT 347
| ||||||||||||||||||| ||||||||||||||||| || | ||| |||||| |||
Sbjct 244 A-AGAGAGATCTAGGGATTGGTTATTAAGAGAGAGAGAG-AGTA-CACTTCACTATGGGT 300
Query 348 TCCTGTGCTGTTGTGTTTTGTGCATCTGTTCTTGTGTTTCTCAGATAAAATATTAGTTTC 407
|| |||||||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct 301 TCTTGTGCTGTTGTGTTTTGTGCATCTGTTCTTGTGTCTCTCAGATAAAA-A--A--AT- 354
Query 408 AGTCTTTCAAAGACATTGAATCTcacacacttactaacacacactcacacacGCGTTAAT 467
|| ||||| |||||||||| | | | | |||||||||||||||||||| |||
Sbjct 355 AG--TTTCAGAGACATTGAA--T------C-T-C--ACACACACTCACACACGCGTAAAT 400
Query 468 TTCTCAACtttttttCTATT--TATTTCTTTTAGCTTCTAGGGTCACTTGAGAAAGCATC 525
||||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||
Sbjct 401 TTCTCAACTTTTTTT-TTTTAATATTTCTTTTAGCTTCTGGGGTCACTTGAGAAAGCATC 459
Query 526 TTGGATTGCGTGATACTTCCAC-TTTCTCATTTCAGAAGAAAAATGGGTTTAGATTGAGT 584
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 460 TTGGATTGCGTGATACTTCCACTTTTCTCATTTC---AG-AAAATGGGTTTAGATTGAGT 515
Query 585 GAAGTGTTAAAAGTATATGTAAGCAAGGGTTGAAGAAGAAGTTCTTTCAATTTCTGTATT 644
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 516 GAAGTGTTAAAAGTGTATGTAAGTAAGGGTTGAAGAAGAAGTTCTTTCAATTTCTGTGTT 575
Query 645 TGTGATTTCCTTAATCTTAGCTAGAGAATGAAGCAGAAGGGTTTTAAAGAGAGAGGTGTT 704
|||||||| ||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 576 TGTGATTTTCTTGATCTTAG--A-A-AATGAAGCAGAAGGGTTTTAAAGAGAGAGGTGTT 631
Query 705 GTAGTGGGGAAGAAAGTAATGGTTGCTGTTAGAGCTTCAAAGGAGATCCCAAAAGCAGCT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GTAGTGGGGAAGAAAGTAATGGTTGCTGTTAGAGCTTCAAAGGAGATCCCAAAAGCAGCT 691
Query 765 CTTTTATGGACTTTAACTCATGTTGTTCAACCTGGAGATCGAATTAGACTTCTTGTTGTT 824
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 692 CTTTTATGGACTTTAACTCATGTTGTTCAACCTGGAGATCGAATTAGGCTTCTCGTTGTT 751
Query 825 GTTCCTTCTAATTACACAAGTAAAAAGATTTGGGGATTTTCGAGGTTCACTAGTGACTGT 884
|||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 752 GTTCCTTCTAATTATACAAGTAAAAAGATTTGGGGGTTTTCGAGGTTTACCAGTGACTGT 811
Query 885 GCATCAGGTTATGGAAGATTTCTTGCTGGAACGAATTCGGATAGGAAAGATGATATTCAT 944
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 812 GCTTCAGGTTATGGAAGATTTCTTGCTGGAACGAATTCAGATAGGAAAGATGATATTCAT 871
Query 945 GAGTCATGTTCTCAGATGATGTTTCAGTTACACAATGTTTATGATGCAGAGAAGATAAAT 1004
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GAGTCTTGTTCTCAAATGATGTTTCAGTTACACAATGTTTATGATGCAGAGAAGATAAAT 931
Query 1005 GTCAGAATCAAAATTGTTTTTGCTTCACTTGATGGAGTTATTGCTGCTGAAGCTAAGAAA 1064
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 932 GTCAGAATCAAAATTGTTTTTGCTTCACCTGATGGAGTTATTGCTGCTGAAGCCAAGAAA 991
Query 1065 TCCAACTCAAACTGGGTGATTTTAGACAGGGGACTGAAGTATGAGAAGAAATGCTGTATT 1124
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 992 TCCAACTCAAACTGGGTTATTTTAGACAGGGGACTGAAGTATGAGAAAAAATGCTGTATT 1051
Query 1125 GAGCAATTGGAGTGCAATCTTGTAGTAATCAAGAAGTCACAGCCAAAGGTTCTTCGTCTC 1184
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1052 GAACAATTGGAGTGCAATCTTGTTGTAATCAAGAAGTCACAGCCAAAGGTTCTTCGTCTC 1111
Query 1185 AATTTGGTGAAAAATGCAGATACAGAGCATCCAGAAGCTATATCAAGGTTAGCTTCAAAG 1244
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1112 AATTTGGTGAAAAATGCAGATACAGAGCATCCAGAAGCTTTATCAAGGTTAGCCTCAAAG 1171
Query 1245 TCTGTCGAGTCTCGGAGAAGCTCAAGAACTGGAAAAAAGTTGAGGGAACCGTTTGTGACT 1304
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1172 TCTGTAGAGTCTTGGAGAAGCTCAAGAACTGGAAAAAAGCTGAGGGAACCGTTTGTGACT 1231
Query 1305 CCAGCTAGCAGTCCAGACCAAGAAGTTTCTTCACATACTGATATAGGGACTTCATCAATA 1364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1232 CCAGCTAGCAGTCCAGACCAAGAAGTTTCTTCACATACTGATATTGGGACTTCATCAATA 1291
Query 1365 TCTAGCTCTGATGCTGGAGCCTCACCGTTTTTAGCTTCTCGAGTCTTTGAGGGTCTCAAG 1424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1292 TCTAGCTCTGATGCTGGAGCCTCGCCGTTTTTAGCTTCTCGAGTCTTTGAGGGTCTCAAG 1351
Query 1425 AAAGAGAATTTGTGGGTCAATGATGGAAGCAAGAGTTTCTTTGAATCCGATTCTGACTCG 1484
|||| ||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1352 GAAGAAAATTTGTGGGTTAATGATGGAAACAAGAGTTTCTTTGAATCTGATTCTGACTCG 1411
Query 1485 GATGGTGAAAAGTGGAGTCCTTTATCAATGGCATCCTCATCTTCTCATCCTGTGACAACA 1544
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1412 GATGGCGAAAAGTGGAGTCCTTTATCAATGGCCTCTTCATCTTCTCATCCTGTGACAACA 1471
Query 1545 GCTGATCTTCTGAGTCCTAGTGGGGATTTATCGAAAGCTCATACCGAAACTCCGAGAAAA 1604
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1472 GCTGATATTCTGAGTCCTAGTGGGGATTTATCGAAAGCTCATACCGAAACTCCGAGGAAA 1531
Query 1605 TCAAGATTTGCGGTTCTTAGGCTCGCTTTATCGAGGAAAGAACCTGAAGCAGGAAAGGAA 1664
||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1532 TCAAGATTTTCGGTTCTTAGGCTCGCTTTATCGAAGAAAGAACCTGAACCAGGAAAGGAA 1591
Query 1665 ATACGTAAACCTGATTCATGCTTAAACAAAAGCGTGAGGGAAGTGGTTTCTTTATCTAGA 1724
|| ||||| ||||| | |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1592 ATCCGTAATTCTGATACGTGCTTAAACAAAAGCGTGAGAGAAGTTGTTTCTTTATCCAGA 1651
Query 1725 AAGCCAGCTCCTGGACCGCCTCCACTATGTACTATATGTCAACACAAGGCACCTAAATTT 1784
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1652 AAACCAGCTCCTGGACCTCCTCCACTATGTACCATATGTCAACACAAGGCACCTAAATTT 1711
Query 1785 GGAAACCCTCCAAGATGGTTCACTTACAGCGAACTGGAGACCGCAACAAAAGGTTTTTCT 1844
||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 1712 GGAAACCCTCCAAGATGGTTCACTTACGGCGAATTGGAGACTGCAACAAAAGGTTTTTCG 1771
Query 1845 AAAGGGAGTTTCTTGGCTGAAGGTGGTTTTGGTTCGGTTCACCTAGGAACTTTACCAGAT 1904
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1772 AAAGGGAGTTTCTTGGCTGAAGGTGGGTTTGGTTCAGTTCACCTAGGAACTTTACCAGAT 1831
Query 1905 GGTCAAATTATTGCTGTCAAACAATATAAAATTGCTAGTACACAAGGAGACCGAGAATTC 1964
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1832 GGTCAAATTATTGCTGTCAAACAATATAAGATTGCTAGTACACAAGGTGACCGAGAATTC 1891
Query 1965 TGCTCTGAAGTTGAAGTCTTGAGCTGTGCACAGCATCGAAATGTTGTTATGCTTATTGGG 2024
|||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct 1892 TGCTCTGAAGTTGAGGTCTTGAGCTGTGCACAACATCGGAATGTTGTGATGCTCATTGGA 1951
Query 2025 CTATGTGTTGAGGATGGGAAAAGATTGCTTGTTTATGAGTATATCTGCAATGGATCATTG 2084
||||| || ||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1952 CTATGCGTGGAGGATGGGAAAAGATTACTCGTTTACGAGTATATCTGCAATGGATCATTG 2011
Query 2085 CATTCTCATCTTTATGGTATGGGGAGAGAGCCATTGGGATGGTCAGCACGACAAAAGATT 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 CATTCTCATCTTTATGGTATGGGGAGAGAGCCATTGGGATGGTCAGCACGACAAAAGATT 2071
Query 2145 GCGGTAGGAGCAGCTCGTGGGTTGAGATACCTTCATGAAGAATGCAGAGTCGGTTGCATC 2204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 GCGGTAGGAGCAGCTCGTGGGTTGAGATACCTTCATGAAGAATGCAGAGTCGGTTGCATT 2131
Query 2205 GTGCATAGGGATATGCGTCCTAACAATATTCTCCTCACTCATGATTTTGAGCCTTTGGTT 2264
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2132 GTGCATAGGGATATGCGTCCTAACAATATTCTGCTCACTCATGATTTTGAGCCTTTGGTT 2191
Query 2265 GGAGATTTCGGACTAGCGAGATGGCAACCAGAAGGAGATAAAGGAGTGGAAACCCGAGTG 2324
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2192 GGAGATTTCGGGCTAGCGAGATGGCAACCAGAAGGAGATAAAGGAGTGGAAACTCGAGTG 2251
Query 2325 ATTGGAACTTTCGGGTACTTGGCACCTGAATACGCACAAAGCGGACAGATTACAGAGAAA 2384
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2252 ATTGGAACTTTCGGGTACTTGGCACCTGAATATGCACAAAGCGGACAGATTACAGAGAAA 2311
Query 2385 GCAGATGTTTACTCATTTGGGGTAGTCTTAGTTGAGCTTATCACAGGAAGAAAAGCTATG 2444
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2312 GCAGATGTTTACTCATTTGGGGTCGTCTTAGTTGAGCTTATCACAGGAAGAAAAGCTATG 2371
Query 2445 GACATAAAACGTCCTAAAGGTCAACAATGTCTCACCGAATGGGCAAGACCATTGTTGCAG 2504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2372 GACATAAAACGTCCTAAAGGTCAACAATGTCTCACCGAATGGGCAAGACCATTGTTGCAG 2431
Query 2505 AAACAAGCCATTAACGAACTTCTTGATCCGCGTCTAATGAATTGCTACTGTGAGCAAGAA 2564
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2432 AAACAAGCCATTAAGGAACTTCTTGATCCGCGTCTAATGAATTGCTACTGTGAGCAAGAA 2491
Query 2565 GTTTATTGTATGGCACTATGTGCTTACCTCTGCATTCGCCGTGACCCTAACTCAAGGCCA 2624
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2492 GTTTACTGTATGGCGCTATGTGCTTACCTCTGCATTCGCCGTGACCCTAACTCGAGGCCA 2551
Query 2625 CGAATGTCTCAGGTGTTGCGGATGTTAGAAGGAGACGTTGTCATGAATCCAATATAGAAG 2684
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2552 CGAATGTCTCAGGTGTTGCGGATGTTAGAAGGAGACGTTGTCATGAATCCAATCTAGAAG 2611
Query 2685 AAGCTTCACAAGGAAAATTCTTCTTAGGGAGTTTGTACACTATTTAGGGTTACTATTACA 2744
|||||||||||| |||||| | |||| | ||||||||||||||||||||
Sbjct 2612 AAGCTTCACAAG-AAAATT-T-CTTA-----------C--TATTTAGGGTTACTATTACA 2655
Query 2745 GCTTTTT-------AAATGAGTTTTGCTTTT--GTATATGTAAAAATTTGTTAATGAGAC 2795
||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2656 GCTTTTTTTCTCTTAAATGAGTTTTGCTTTTTTGTATATGTAAAAGTTTGTTAATGAGAC 2715
Query 2796 AAAGATTCAACTAAAGTTTGTTGAGATT 2823
|||||||||| ||| |||||| ||||||
Sbjct 2716 AAAGATTCAAGTAATGTTTGTGGAGATT 2743
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 AGAGCTACAAATCCAAAATACTTCTTATTT 30
||||||||||||||||||||||||||||||
Sbjct 1 AGAGCTACAAATCCAAAATACTTCTTATTT 30
> Ahg917508 jgi|Araly1|917508|Al_scaffold_0008_2259
Length=234
Score = 100 bits (54), Expect = 5e-20
Identities = 76/86 (88%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 2261 GGTTGGAGAT-TTCGGACTAGCGAGATGGCAACCAGAAGGAGATAAAGGAGTGGAAACCC 2319
|||||||||| | ||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 150 GGTTGGAGATCTCCGG-CTAGCAAGATGGCAACCAGAAGGAGATAAAGGAGTGTTAACCC 208
Query 2320 GAGTGATTGGAACTTTCGGGTACTTG 2345
||||| | || ||||||||||| |||
Sbjct 209 GAGTGGTCGGCACTTTCGGGTA-TTG 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106652686000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5