BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56810.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495770 jgi|Araly1|495770|fgenesh2_kg.8__1586__AT5G56810.1 1882 0.0
> Ahg495770 jgi|Araly1|495770|fgenesh2_kg.8__1586__AT5G56810.1
Length=1287
Score = 1882 bits (1019), Expect = 0.0
Identities = 1202/1290 (93%), Gaps = 14/1290 (1%)
Strand=Plus/Plus
Query 25 GAAGATGTTACATCTCCTGATAGGATCAGCCAGTTACCTAACGATTTACTTTTTCGAATA 84
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4 GAAGAGGTTACATATCCTGATAGGATCAGCCAGTTACCTAACGATTTGCTTTTTCGAATA 63
Query 85 CTCTCATTAATCCCGGTAAGCGATGCAATGTCCACAAGTTTATTGTCTAAACGTTGGAAA 144
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 64 CTCTCATCAATCCCGGTAAGCGATGCAATGTCCACAAGTTTATTGTCTAAACGATGGAAA 123
Query 145 TCTGTGTGGAAGATGTTGCCAACGCTTGTATACAATGAAAA-CTCTTGTTCCAATATTGG 203
|||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||
Sbjct 124 TCTGTGTGGAAGATGTTGCCAAGGCTTGTATACAATGAAAACCT-TTGTCCCAATATTGG 182
Query 204 TTCTCTTGGATTTGACCAATTTTGTGGTAGGTCCTTG-CAATTACATGAAGCTCCACTTC 262
||||||||||||||||||||||||||| || |||||| | |||||||||||||||||||
Sbjct 183 TTCTCTTGGATTTGACCAATTTTGTGGCAGATCCTTGTC-CTTACATGAAGCTCCACTTC 241
Query 263 TCAAAACCCTAACCCT-AGAACTTAGGAAGCAAACTGATTCCTTAGATTCTTC-CATATT 320
|||||||||||| || | |||||||||| ||| ||||||| |||||||| || ||||||
Sbjct 242 TCAAAACCCTAAATCTCA-AACTTAGGAACCAATCTGATTCTTTAGATTC-TCTCATATT 299
Query 321 TCCAAACATTCATTCTACTCTCCTTGA-ATTCTCAATCAAATCTACTGGTTATCC-TGTT 378
||||||||| | ||| || |||||||| | | |||||||||||||||| |||||| || |
Sbjct 300 TCCAAACATACGTTCCACACTCCTTGAGA-TGTCAATCAAATCTACTGATTATCCTTG-T 357
Query 379 TATTACAGTACTATCAGTTTCCCAAACAACCTTGATGTCTTCCAAACACTAGTTGTCTTG 438
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 358 TATTACAGTACTATCAGTTTCCCAAACAACCTTGATGTCTTCCAAACATTAGTTGTCTTG 417
Query 439 AAACTCCAAGGCAATATTTGTCTTGATGTTGTTGATTCTCCGGTTTGTTTCCAGTCCTTG 498
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 418 AAACTCCAAGGCAATATTACTCTTGATGTTGTTGATTCTCCGGTTTGTTTCCAGTCTTTG 477
Query 499 AAGAGTTTGTACCTCACATGTGTGAATTTCGAGAATGAAGAATCTTTTTCCAAACTTTTA 558
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 AAGAGTTTGTACCTCAAATGTGTGAATTTCAAGAATGAAGAATCTTTTTCCAAACTTTTA 537
Query 559 TCTGCTTGTCCTGTTCTTGAAGACCTCTTCCTCCAAAGACTTTGTAGTGTGGGGCGTTTT 618
|| || |||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 538 TCAGCCTGTCCTGTTCTTGAAGACCTCTTCCTCCAAAGACTTTGCAGTGTCGGTCGTTTT 597
Query 619 TTGTTTTCCATATCAGTCCCTTCTCTACAGAGATTAACCTACACTAAAGAACAA-GCCTA 677
||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 598 TTGTTCACCATATCAGTCCCTTCTCTACAGAGATTAACCTACAATAAAGAACAATG-CTA 656
Query 678 TTATTCTAACGATGAAGCAATACTCGAGATTACCGCTCCTTCTTTGAAGCACTTAAACAT 737
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 657 TTATTCTAACGATGAAGCCATACTCGAGATTACTGCTCCTTCTTTGAAGTACTTAAATAT 716
Query 738 CTTCGATCGCGTAGGTGTTTTCAGTTTTATTGAGGATATGCCTAAATTGGTGGAAGCAAG 797
||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||
Sbjct 717 CTTCGATCGCGTAGGTGTTTTCAGTTTTATTGAAGATATGGATAAGTTGGTGGAGGCAAG 776
Query 798 TGTTAGAGTTAAACTGTCAAAGAATGAGAAGCTTCCGAAAGTTCTTACTTCAGTTGAGCA 857
||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 TGTTAAAGTTAATCTGTCAAAGAATGAGAAGCTTCCGAAAGTTCTTACTTCGGTTGAGCA 836
Query 858 TCTTTCGCTAGATCTATATCCTTCAATGGTTTTTCACCTTGATGATAGATTCATCTCCAA 917
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 837 TCTTTCGCTAGATTTATATCCTTCAATGGTTTTTCACCTTAATGATAGATTCATCTCCAA 896
Query 918 GCAGCTTCTTCATCTGAAATTAGACATTTACGACAACTTTCAGTCGAATCTTCTTCTGAG 977
||| |||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 897 GCAACTTCTTCATCTGGAATTAGACATTTACGACAACTTTCGGTCAAATCTACTTCTGAG 956
Query 978 TTTGTTGAAAGATTTACCTAATCTACAATCTCTCAAGCTCAACCATTCACATCCCAGCTA 1037
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 957 TTTTTTGAAAGATTTACCTAAGCTACAATCTCTCAAGCTCAACCACACACATCCCAACTA 1016
Query 1038 TAATGTCGAAGATCAACCGTGTTCAGTCTCTGAACCAAGCTCTGTTCCTGAATGCTTGAG 1097
|| |||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct 1017 TACTGTCGAGGATCAACCGTCTTCAGTCTCTGGACCGAGCTCTGTTCCTGAATGCTTGAG 1076
Query 1098 CTTCCATCTCGAGACTTTTCAATGGATAGGCTACGCAGGAACATTTGAAGAGATAGCAGC 1157
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 1077 CTTCCATCTCGAGACTTTTCAATGGATAGGCTACGCAGGAACAATTGAAGAGACAGAAGC 1136
Query 1158 TGCGGTTTACGTTCTGAAAAACGCTCGTTGTTTAAAGAATGCTACAATCTCTCTGTATTC 1217
||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 1137 TGCGGTTTACGTTCTGAAAAACGCTCGTTGTTTGAAGAATGCTACAATATCTCTGCATTC 1196
Query 1218 AAGGGGCACAGAGAATGGTTTGATGATGATTAAGGAGTTGGAATCTATGTCTAAAGGTTC 1277
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 AAGGGGCACAGAGAATGATCTGATGATGATTAAGGAGTTGGAATCTATGTCTAAAGCTTC 1256
Query 1278 AATCATGTGTCAGCTTTTAGTTAAATTTTA 1307
|| |||||||||||||||||||||||||||
Sbjct 1257 AAACATGTGTCAGCTTTTAGTTAAATTTTA 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5