BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56820.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495771 jgi|Araly1|495771|fgenesh2_kg.8__1587__AT5G56820.1 1467 0.0
> Ahg495771 jgi|Araly1|495771|fgenesh2_kg.8__1587__AT5G56820.1
Length=1317
Score = 1467 bits (794), Expect = 0.0
Identities = 1154/1319 (87%), Gaps = 59/1319 (4%)
Strand=Plus/Plus
Query 1 ATGAAAGCTCCAAGATTGGGAAGTGAAGAGGTTTCATATTCGGATAGGATTAGTTACTTA 60
||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1 ATGAATGCTCCAAGATTGGGAAGTGAAGAGTTTTCATATTCGGATAGGATTAGTGACTTA 60
Query 61 CCTGATGATTTGCTTTTACGAATACTCTCATTCATTCATACAAGCGATGCTATCTCCACA 120
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 61 CCTGATGATTTGCTTTTACGAATACTCTCATTCATTCCTACAAGCGATGCCATCTCCACA 120
Query 121 AGCTTATTATCTAAACGATGGAAGTTTGTGTGGAAGATGATGCCAACACTTGATCTTGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTTATTATCTAAACGATGGAAGTTTGTGTGGAAGATGATGCCAACACTTGATCTTGAT 180
Query 181 GAAGATTCTTGTCGCAATATTGGCACCCTTCGATTTGACGAAGGTTGTTGCATG-TTCTT 239
||||| |||||||||||| ||||| ||||| |||||||||||| |||||||| | |||||
Sbjct 181 GAAGACTCTTGTCGCAATCTTGGCTCCCTTAGATTTGACGAAGTTTGTTGCA-GCTTCTT 239
Query 240 GAAATCACATGAAGCTCCGGTTCTTACAAGTTTGAATCTCAAACTTATGACACCTTCTCA 299
| |||||||||||||| ||||||||| |||||||||||||||||||||| | ||| |
Sbjct 240 GCCATCACATGAAGCTCGGGTTCTTACGAGTTTGAATCTCAAACTTATGAAAAAATCTAA 299
Query 300 TGATATAGATCGTCTTTTATCAAATATTAAACCCATTCTTCATGAGATCACAATCACTTC 359
||||||||| ||||| |||||||||||| || | |||||||||||| |||||||||||||
Sbjct 300 TGATATAGACCGTCTGTTATCAAATATTCAATCTATTCTTCATGAGCTCACAATCACTTC 359
Query 360 TTATAGGTACAGTAC-TATCAGATTCCCAAGGAATCTTAACGTCTGCCAAACACTTGTCG 418
|||||| | ||| | |||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 360 TTATAGTTGGAGT-CGTATCAGCTTCCCAAGGAATCTTAATGTCTGCCAGACACTTGTCG 418
Query 419 TGATGAAACTCCAAGACAAGGTTCTTGTGGATGTTTCTTTCCC-G--G-TTTGTTTCCGG 474
|||||||||||||||||||||||||||||||||||| |||||| | | |||||||||||
Sbjct 419 TGATGAAACTCCAAGACAAGGTTCTTGTGGATGTTT-TTTCCCCGCCGGTTTGTTTCCGG 477
Query 475 TCCTTGAAAAGTTTGCACCTCACACGCGTGAAATACTCTTGCCGAGAATCTTTCACCACA 534
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 478 TCCTTGAAAACTTTGCACCTCACACGCGTGAAATACTCTTGCCAAGAATCTTTCAGAAGA 537
Query 535 CTTTTATCAGCTTGTCCTGTTCTTGAAGATTTAGATCTCTTCATTGGCAGAGTTCACTAT 594
|||||||||| ||||||||||||||||||| || |||||||||| | ||||||| ||||
Sbjct 538 CTTTTATCAGTTTGTCCTGTTCTTGAAGATCTATATCTCTTCATAGATAGAGTTCGCTAT 597
Query 595 GACTGTCTTAACT-CGTTTACTATATGGGTGCCGTCCTTACAGAGATTATCTATATGTGA 653
|| |||||| || |||| || |||| || || ||||||||||||||||||||||||||
Sbjct 598 GAATGTCTTC-CTTCGTTCACCATATTTGTCCCTTCCTTACAGAGATTATCTATATGTGA 656
Query 654 CGAGTCATACCGCTTTCGTAGCACGACGTTTGAAATAAGTGTTCCTTCTTTGAAATACTT 713
|||||||| || | | ||| ||||||||||||||||||||||||| ||||||
Sbjct 657 AGAGTCATATAGCA---G--G-ACGTTATTTGAAATAAGTGTTCCTTCTTTGATATACTT 710
Query 714 AAAAATCGCGTG-TCAGG-ACAGTTGCTTTAAGTTTGTTGAGGACATGCCTAACTTAGTT 771
|||||||||| | || | | |||| ||||||||| ||||||| |||||||| ||||||
Sbjct 711 AAAAATCGCG-GCTC-GCTATGGTTGGTTTAAGTTTTTTGAGGATATGCCTAAGTTAGTT 768
Query 772 GAGGCACATGTTGAAGCTAA-TCAACATGAAACTAAGAACCT-CTTGAGATTTCTCACCT 829
|||||||||||||||| ||| || | |||||| ||| ||||| || ||| | |||||| |
Sbjct 769 GAGGCACATGTTGAAG-TAAATCCATATGAAATTAATAACCTTCT-GAGGTGTCTCACTT 826
Query 830 CAGTTGAACGTCTTAAG---GA-T----C-C---A--G-AT------CTTACCGATAGAA 868
| |||||||||||| | || | | | | | || |||||||||||||
Sbjct 827 CTGTTGAACGTCTTTCGATTGAATTTTTCTCTTCAATGGATATAGTTCTTACCGATAGAA 886
Query 869 TCTTCCACCAGCTTCTTTATCTTGAGCTGCATTTGCACAAAAGACT-CAATGGGGA-TCG 926
||||||||| |||||||||||||||||||||| ||||||| |||| || || || ||
Sbjct 887 TCTTCCACCGGCTTCTTTATCTTGAGCTGCATATGCACAACGGACTTCA--GGAGAATCA 944
Query 927 AATTCTGAGTTTGCTCAAACATTCTCCTAATCTACAAACTCTCAAGCTCAACGAGAAACC 986
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 945 AATTCTGAGTTTGCTCAAACATTCCCCTAATCTACAAGCTCTCAAGCTCAACGAGAAACC 1004
Query 987 TTTACGTTCTATCAAGGATCAACCGAATATATCTGTTCGTAAACCGAATTCTGTTCCTGA 1046
|| ||||| ||| ||||||||||| || | ||||| |||||||||||||||||||||
Sbjct 1005 TTCGTGTTCTGTCAGGGATCAACCGAG-AT-T-TGTTCCTAAACCGAATTCTGTTCCTGA 1061
Query 1047 GTGCTTAACCTTCCATCTTGAAACTCTTGAGTGGCAAGGCTATGCAGGAAGACCGGAAGA 1106
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1062 GTGCTTGACCTTCCATCTTGAAACTCTTGAGTGGCGAGGCTATGCAGGAAGACCGGAAGA 1121
Query 1107 TAAAGAAATCGCTGTTTACATTTTGGGAAACGCTCTTCGTCTCAACACGGCTACGATCTC 1166
||||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1122 TAAAGAAATTGCTGTGTACATTTTGGGAAACGCTCTTCGTCTAAACACGGCTAAGATCTC 1181
Query 1167 TCGATATTTCAGCTCCAGCCGCTTCCGTC------ACCACCAGAAGAAGGATCTAAAAAT 1220
|||||||||| ||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1182 TCGATATTTCTCCTCCAGCCGCTTCCGTCCCCGCCACCACCAGAAGAAGGATCGAAAAAT 1241
Query 1221 TGTGGAGGAGTTAAAATCTATAACTAAGGCCTCAACTTCATGTCAGCTTGTACTTCAAC 1279
||| |||||||||||||| || ||||||| ||||||||||||||||||||| ||||||
Sbjct 1242 CGTGAAGGAGTTAAAATCTTTATCTAAGGCTTCAACTTCATGTCAGCTTGTAATTCAAC 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5