BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56860.1
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495776 jgi|Araly1|495776|fgenesh2_kg.8__1592__AT5G56860.1 2327 0.0
> Ahg495776 jgi|Araly1|495776|fgenesh2_kg.8__1592__AT5G56860.1
Length=1536
Score = 2327 bits (1260), Expect = 0.0
Identities = 1457/1549 (94%), Gaps = 25/1549 (2%)
Strand=Plus/Plus
Query 1 AAAAAGGATCAAACATAGTATAGCTTGGActctttttgccgtctatgatctctctcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGGATCAAACATAGTATAGCTTGGACTCTTTTTGCCGTCTATGATCTCTCTCAATC 60
Query 61 tctcatcttagctttctttctctctctctttgtgtcttcatttgtttatctcatcaATGG 120
||||||||||||| || | | |||||| |||||||||||||| ||||||||||||||||
Sbjct 61 TCTCATCTTAGCTATC--T-T-TCTCTCGTTGTGTCTTCATTTCTTTATCTCATCAATGG 116
Query 121 ATTCAAATTTTCATTACTCGATAGATCTTAACGAAGATCAAAACCATCACGAACAACCCT 180
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 117 ATTCGAATTTTCATTACTCTATAGATCTTAACGAAGATCAAAACCATCACGAACAGCCCT 176
Query 181 TTTTCTATCCTCTTGGATCCTCTTCCTCGCTtcatcatcatcatcatcatcatcatcatc 240
|||||||||||||||||||||| | ||| || || | || |||||||||||||||||
Sbjct 177 TTTTCTATCCTCTTGGATCCTC-T--TCG--TC-TC-T--TCTTCATCATCATCATCATC 227
Query 241 aAGTCCCTTCTAATTCTTCATCTTCTTCTTCGTCCATTTCATCGCTCTCCTCTTACCTCC 300
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 228 AAGTCCCTTCTAATTCTTCATCTTCTTCTTCGTCCATTTCGTCTCTTTCCTCTTACCTCC 287
Query 301 CTTTCTTGATCAACTCTCAAGAAGATCAACATGTTGCCTACAACAACACTTATCACGCTG 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 288 CTTTCTTGATCAACTCTCAAGAAGATCAACATGTTGCCTACAACAATACTTATCATGCTG 347
Query 361 ATCATCTCCATCTTTCTCAACCCCTCAAGGCCAAGATGTTTGTGGCTAAC-GGTGGATCA 419
||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||
Sbjct 348 ATCATCTCCATCTTTCTCAACCCCTCAAGGCTAAGATGTTTCTGGCT-ACTGGTGGATCA 406
Query 420 TCAGCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAA 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TCATCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAA 466
Query 480 AAAGATCACGAAGACCAACCCCATCCTCTTCATCAAAACCCGACAAAACCCGATTCAGAC 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 467 AAAGATCACGAAGACCAAACCCATCCTCTTCATCAAAACCCGACAAAACCCGATTCAGAC 526
Query 540 TCCGACAAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATCACCAACAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TCCGACAAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATCACCAACAAT 586
Query 600 AAACAGCTCATTGATCAGACTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTG 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AAACAGCTCATTGATCAGAGTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTG 646
Query 660 AATCATAAGACTAATTTCGACGAGGATCACCATGAAGATCTTAATTTCAAGAACGTCTTG 719
||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| ||||||
Sbjct 647 AATCATAAGACTAATTTTGACGAAGATCACGATGAAGATCTCAATTTCAAGAAAGTCTTG 706
Query 720 ACCAGGAAGACCACGGCCGCGACCACCGAGAATCGCTACAATACAATCAACGAGAACGGT 779
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 707 ACCAGGACGACCACGGCCGCGACCACCGAAAATCGCTACAATACAATCAACGAGAATGGT 766
Query 780 TATAGTAATAACAATGGCGTGATTAGGGTTTGTTCGGATTGTAACACCACCAAGACTCCT 839
||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 767 TATGGTAATAACAATGGCGTGATTAGGGTTTGCTCGGATTGCAACACCACCAAGACTCCT 826
Query 840 CTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGTATACGGCAA 899
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 827 CTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGCATAAGGCAA 886
Query 900 AGAAAGGCAAGGCGAGCCGCTATGGCCGCGGCCGCTGCAGCCGGCGACCAAGAGGTGGCG 959
|||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 887 AGAAAGGCGAGGCGAGCCGCTATGGCCGCGGCCGCAGCTGCCGGCGACCAAGAGGTGGTG 946
Query 960 GTAGCGCCCCGAGT-GCAACAATTACCGCTGAAAAAGAAGTTGCAAAATaaaaaaaaGAG 1018
|||||| ||||| | || |||||||| ||||||||||||||||||||| || ||||||||
Sbjct 947 GTAGCGTCCCGA-TCGCCACAATTACTGCTGAAAAAGAAGTTGCAAAACAAGAAAAAGAG 1005
Query 1019 ATCAAACGGAGGGGAAAAATACAATCACTCTCCTCCAATGGTGGCCAAGGCCAAAAAGTG 1078
|||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1006 ATCAAACGGAGGGGAAAAATACAATCTCTCTCCTCCGGTGGTGGCCAAGGCGAAAAAGTG 1065
Query 1079 CAAGATCAAAGAGGAAGAGGAGAAGGAAATGGAAGCGGAAACG--G-TTGCCGGAGATTC 1135
|||||||||||||||||| ||| ||| ||||| ||||||||| | || || | ||||
Sbjct 1066 CAAGATCAAAGAGGAAGATGAGGTGGACATGGAGGCGGAAACGACGATTTCCAAAAATTC 1125
Query 1136 AGAGATCAGCAAATCTACAACTTCTTCTAATTCTTCGATTTCGTCAAACAAATTTTGCTT 1195
||||||||||||||| ||||| |||||||||||||| |||||||| |||||| |||||||
Sbjct 1126 AGAGATCAGCAAATCAACAACCTCTTCTAATTCTTCAATTTCGTCGAACAAACTTTGCTT 1185
Query 1196 CGATGATTTGACAATAATGTTGAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CGATGATTTGACAATAATGTTGAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGA 1245
Query 1256 TGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGTTGATC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGTTGATC 1305
Query 1316 AGATCATCACAATATCCTCATTACAA-AAAGGTTTATTTTAATAGTAATATATAGATTAT 1374
|||| |||||| |||||| ||||||| ||||||||||||| ||||| ||||||||| |||
Sbjct 1306 AGATAATCACATTATCCTGATTACAAGAAAGGTTTATTTTTATAGTTATATATAGACTAT 1365
Query 1375 AGTAATCATAATAATGATTGATTGTTAAATCTTGGAGTGATTAGTTTAGTTTTTGCAGTT 1434
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1366 AGTAATCATAATAATGATTGATTGTTAAATCTTGGAGTGATTAATTTAGTTTTTGCAGTT 1425
Query 1435 GGTCTAATATCAGGAGTCA-AAA--CATTTT-ATAATAAGAGTGTGTGAGAGTTTAATAT 1490
||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1426 GGTCTAATATCAGGAGTCAGAAAAACATTTTTATAATAAGATTGTGTGAGAGTTTAATAT 1485
Query 1491 GATAATTAATAGCTCTATATATGTTTATGGAGAttttggttttgagttt 1539
|||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1486 GATAATTAATAGTTCTATATATGTTTATGGAGATTTTGGTTTAGAGTTT 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62925084740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5