BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56870.1
Length=2502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917381 jgi|Araly1|917381|Al_scaffold_0008_2132 3559 0.0
Ahg492198 jgi|Araly1|492198|fgenesh2_kg.7__1631__AT4G26140.1 1751 0.0
Ahg485655 jgi|Araly1|485655|fgenesh2_kg.5__1647__AT3G52840.1 1620 0.0
> Ahg917381 jgi|Araly1|917381|Al_scaffold_0008_2132
Length=2181
Score = 3559 bits (1927), Expect = 0.0
Identities = 2097/2180 (96%), Gaps = 8/2180 (0%)
Strand=Plus/Plus
Query 89 ATGGTATTGAACTTTAGAGATAAGTCCTGCATTTTTCTGGCAATTCTTTGTTGTTTATCA 148
|||| |||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 1 ATGGGATTGAATTTTAGAGATAAATCCTGGATTTTTCTGGTGATTCTTTGTTGTTTATCA 60
Query 149 TTGAG-TTGTATAGTAAAAGCATCAGTCTCTTATGATCGTAAAGCTGTGATCATCAATGG 207
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTG-GTTTGTATAGTAAAAGCATCAGTCTCTTATGATCGTAAAGCTGTGATCATCAATGG 119
Query 208 ACAAAGAAGAATCCTTCTCTCCGGTTCCATTCACTATCCACGAAGCACCCCTGAGATGTG 267
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACAAAGAAGAATCCTTCTCTCTGGTTCCATTCACTATCCACGAAGCACCCCTGAGATGTG 179
Query 268 GCCTGGCCTAATACAGAAAGCCAAAGAAGGAGGCTTGGATGTTATTGAGACTTATGTTTT 327
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCCTGGCCTCATACAGAAAGCCAAAGAAGGAGGCTTGGATGTTATTGAGACTTATGTTTT 239
Query 328 TTGGAATGGCCATGAACCTTCTCCTGGACAATATTATTTTGGAGACAGGTATGATTTGGT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGGAATGGCCATGAACCTTCTCCTGGACAATATTATTTTGGAGACAGGTATGATTTGGT 299
Query 388 TAAGTTCATCAAGTTGGTGCACCAAGCTGGTCTCTATGTTAATCTCAGAATTGGCCCTTA 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAGTTCATCAAGTTGGTGCACCAAGCTGGTCTCTATGTTAATCTCAGAATTGGCCCTTA 359
Query 448 TGTTTGTGCTGAATGGAATTTTGGGGGATTTCCGGTTTGGCTCAAATTTGTTCCCGGTAT 507
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 TGTTTGTGCTGAATGGAACTTTGGGGGATTTCCGGTTTGGCTTAAATTTGTTCCCGGTAT 419
Query 508 GGCTTTTAGGACGGATAATGAACCTTTCAAGGCTGCAATGAAGAAATTCACTGAAAAGAT 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGCTTTTAGGACGGATAATGAACCTTTCAAGGCTGCAATGAAGAAATTCACTGAAAAGAT 479
Query 568 TGTATGGATGATGAAAGCAGAAAAGTTGTTTCAAACTCAAGGAGGACCCATCATTCTTGC 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGTATGGATGATGAAAGCAGAAAAGTTGTTTCAAACTCAAGGAGGACCCATCATTCTTGC 539
Query 628 ACAG--A----TTGAGAATGAATATGGACCAGTGGAATGGGAAATAGGAGCACCGGGAAA 681
|||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 ACAGGGACAGATTGAGAATGAATATGGACCAGTGGAATGGGAAATAGGAGCACCAGGAAA 599
Query 682 GGCTTATACAAAATGGGTAGCTCAAATGGCATTAGGACTCTCAACTGGTGTTCCATGGAT 741
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 GGCTTATACAAAATGGGTAGCTCAAATGGCATTAGGACTCTCCACTGGTGTTCCATGGAT 659
Query 742 TATGTGCAAGCAAGAAGATGCTCCTGGTCCTATCATAGACACATGCAATGGTTATTACTG 801
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 660 TATGTGCAAGCAAGAAGATGCTCCTTCTCCTATCATAGACACATGCAATGGTTATTACTG 719
Query 802 TGAAGATTTCAAACCGAACTCAATCAACAAGCCAAAGATGTGGACAGAGAATTGGACTGG 861
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAAGATTTCAAACCAAACTCAAGCAACAAGCCAAAGATGTGGACAGAGAATTGGACTGG 779
Query 862 TTGGTACACAGATTTTGGAGGTGCGGTACCATACAGACCAGTCGAAGATATTGCATACTC 921
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 780 TTGGTACACAGAGTTTGGAGGTGCTGTACCATACAGACCAGTCGAAGATATTGCATATTC 839
Query 922 CGTTGCACGATTTATCCAAAAAGGAGGTTCCCTCGTCAATTACTATATGTATCATGGAGG 981
||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 840 TGTTGCACGATTCATACAAAAAGGAGGTTCCTTCGTCAATTACTATATGTATCATGGAGG 899
Query 982 AACAAATTTCGACAGAACAGCCGGTGAGTTCATGGCTTCAAGCTATGACTATGACGCTCC 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AACAAATTTCGACAGAACAGCCGGTGAGTTCATGGCTTCAAGCTATGACTATGACGCTCC 959
Query 1042 TCTCGATGAATACGGCTTACCAAGAGAACCAAAGTATAGTCACTTGAAAGCATTGCATAA 1101
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 TCTCGATGAATACGGCTTACCAAAAGAACCAAAGTATAGTCACTTGAAAGCATTGCATAA 1019
Query 1102 AGCCATCAAACTTAGTGAGCCAGCTTTGCTTTCTGCTGATGCTACCGTTACATCGCTTGG 1161
|| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1020 AGTCATCAAACTTAGTGAGCCAGCTTTGCTTTCTGCTGATGCTACGGTCACATCGCTTGG 1079
Query 1162 AGCTAAGCAAGAAGCTTATGTGTTCTGGTCTAAATCATCTTGTGCTGCGTTTTTATCGAA 1221
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1080 AGCTAAACAAGAAGCTTATGTGTTCTGGTCTAAATCATCTTGTGCTGCATTTTTATCGAA 1139
Query 1222 CAAAGATGAGAACTCTGCAGCGAGAGTTCTGTTCCGTGGATTCCCATATGATTTGCCTCC 1281
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1140 CAAGGATGAGAACTCTGCAGCGAGAGTTATGTTCCGTGGATTCCCATATGATTTGCCTCC 1199
Query 1282 TTGGTCAGTCAGTATTTTACCTGATTGCAAAACAGAGGTTTACAACACTGCAAAGGTCAA 1341
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1200 TTGGTCAGTCAGTATTTTACCTGATTGCAAAACAGAGTTTTACAACACTGCAAAGGTTAA 1259
Query 1342 TGCACCAAGCGTACACAGGAATATGGTTCCTACTGGTACTAAATTCTCTTGGGGATCATT 1401
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1260 TGCACCAAGCGTACACAGGAATATGGTTCCTACTGGTACCAGATTCTCTTGGGGATCATT 1319
Query 1402 CAACGAAGCGACTCCTACAGCGAATGAAGCTGGTACGTTTGCAAGAAACGGGCTTGTGGA 1461
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 CAACGAAGCGACTCCTACTGCGAATGAAGCAGGTACGTTTGCAAGAAACGGGCTTGTGGA 1379
Query 1462 ACAAATAAGCATGACTTGGGACAAATCTGACTATTTTTGGTATATAACAGACATTACAAT 1521
||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 1380 ACAGATAAGCATGACTTGGGACAAATCTGACTACTTCTGGTATCTAACAGACATTACAAT 1439
Query 1522 CGGTTCCGGTGAGACATTTTTGAAGACTGGTGATTCACCTCTTCTTACAGTTATGTCAGC 1581
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1440 TGGTTCCGGTGAGACATTTTTGAAGACTGGTGATTCCCCTCTTCTTACTGTTATGTCAGC 1499
Query 1582 TGGACATGCTCTTCATGTGTTTGTCAATGGTCAGCTTTCAGGAACTGCTTATGGAGGACT 1641
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1500 TGGACATGCCCTTCATGTGTTTGTCAATGGGCAGCTTTCAGGAACTGCTTATGGAGGACT 1559
Query 1642 TGACCACCCAAAACTAACCTTTAGCCAGAAGATCAAACTACATGCAGGTGTCAACAAGAT 1701
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1560 TGACCACCCAAAACTCACCTTTAGCCAGAAGATCAAACTACATGCAGGTGTCAACAAGCT 1619
Query 1702 TGCTCTTCTGAGTGTTGCAGTGGGTCTCCCGAACGTTGGTACACATTTTGAACAGTGGAA 1761
||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1620 TGCTCTTTTGAGTGTTGCAGTGGGTCTCCCGAATGTCGGTACACATTTTGAACAGTGGAA 1679
Query 1762 TAAAGGAGTTCTTGGTCCGGTCACATTGAAGGGAGTAAACTCAGGAACATGGGACATGTC 1821
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1680 TAAAGGAGTTCTTGGTCCGGTCACATTGAAGGGAGTTAACTCAGGAACATGGGACATGTC 1739
Query 1822 GAAATGGAAATGGTCCTATAAGATTGGTGTAAAGGGTGAGGCTTTGAGTCTTCATACCAA 1881
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1740 GAAATGGAAATGGTCCTATAAGATTGGTGTAAAGGGTGAAGCTTTGAGTCTTCATACCGA 1799
Query 1882 CACAGAGAGTTCCGGTGTGAGATGGACTCAAGGATCATTTGTGGCGAAGAAGCAACCATT 1941
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1800 TACCGAGAGTTCCGGTGTGAGATGGACTCAAGGATCATTTGTGGCCAAGAAGCAACCATT 1859
Query 1942 AACCTGGTACAAGTCTACGTTTGCTACACCAGCAGGAAATGAACCATTGGCTTTAGACAT 2001
||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1860 GACCTGGTACAAGTCTACTTTTGCTACACCAGCAGGCAATGAACCATTAGCTTTAGACAT 1919
Query 2002 GAACACAATGGGAAAAGGTCAAGTTTGGATAAACGGTAGAAATATTGGACGTCATTGGCC 2061
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1920 GAACACAATGGGAAAAGGTCAAGTTTGGATAAATGGTAGAAACATTGGACGTCATTGGCC 1979
Query 2062 TGCATATAAAGCTCAAGGATCTTGTGGACGTTGTAACTACGCTGGAACTTTCGACGCAAA 2121
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1980 AGCATATAAGGCTCAAGGATCTTGTGGACGTTGTAACTACGCTGGAACTTTCAACGCAAA 2039
Query 2122 GAAATGCTTAAGTAATTGTGGTGAAGCTTCACAAAGATGGTACCATGTACCTCGTTCATG 2181
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 GAAATGTTTAAGTAATTGTGGTGAAGCTTCACAAAGATGGTACCATGTACCTCGTTCATG 2099
Query 2182 GCTTAAGTCTCAAAACCTTATAGTTGTGTTCGAAGAGTTAGGTGGTGATCCTAACGGAAT 2241
|||||||||||| || |||||||||||||| ||||||| |||||||||||||| |||||
Sbjct 2100 GCTTAAGTCTCAGAATCTTATAGTTGTGTTTGAAGAGTGGGGTGGTGATCCTAATGGAAT 2159
Query 2242 CTCTTTGGTTAAAAGAACAT 2261
||| ||||| ||||||||||
Sbjct 2160 CTCATTGGTGAAAAGAACAT 2179
> Ahg492198 jgi|Araly1|492198|fgenesh2_kg.7__1631__AT4G26140.1
Length=2383
Score = 1751 bits (948), Expect = 0.0
Identities = 1827/2237 (82%), Gaps = 117/2237 (5%)
Strand=Plus/Plus
Query 83 AAGAAAATGGTATTGAACTTT-AGAGAT-AAGTCCTGCATTTTTCTGGCAATTCTTTGTT 140
||| |||||| || || ||| || ||| ||| |||| || |||||| |||||||| |
Sbjct 70 AAG-AAATGGGGTT-AAATTTCAGGGATAAAG-CCTGGATACTTCTGGGGATTCTTTGGT 126
Query 141 GTTTATCATTGAGTTGTA-T-AGTAAAAGC-ATCAGTCTCTTATGATCGTAAAGCTGTGA 197
||| ||| |||| || || | ||| ||||| || ||| |||| ||||||||||||||||
Sbjct 127 GTTCATCTTTGA-TT-TATTCAGTTAAAGCAAT-GGTCACTTACGATCGTAAAGCTGTGA 183
Query 198 TCATCAATGGACAAAGAAGAATCCTTCTCTCCGGTTCCATTCACTATCCACGAAGCACCC 257
|||||||||| || ||||| ||||||||||| || ||||||||||| ||| ||||||| |
Sbjct 184 TCATCAATGGTCAGAGAAGGATCCTTCTCTCTGGCTCCATTCACTACCCAAGAAGCACAC 243
Query 258 CTGAGATGTGGCCTGGCCTAATACAGAAA-GCCAAAGAAGGAGGCTTGGATGTTATTGAG 316
||||||||||||||| ||| ||||| ||| |||||||| ||||| ||||||||||| ||
Sbjct 244 CTGAGATGTGGCCTGACCTTATACA-AAAGGCCAAAGATGGAGGTTTGGATGTTATACAG 302
Query 317 ACTTATGTTTTTTGGAATGGCCATGAACCTTCTCCTGGACAATATTATTTTGGAG-ACAG 375
||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 303 ACTTATGTTTTCTGGAATGGGCATGAACCTTCTCCTGGACAATATTATTTTG-AGGACAG 361
Query 376 GTATGATTTGGTTAAGTTCATCAAGTTGGTGCACCAAGCTGGTCTCTATGTTAATCTCAG 435
||||||||||||||||||||||| |||| || ||||||||||| || ||| |||||||
Sbjct 362 ATATGATTTGGTTAAGTTCATCAAACTGGTACAACAAGCTGGTCTTTACGTTCATCTCAG 421
Query 436 AATTGGCCCTTATGTTTGTGCTGAATGGAATTTTGG-GGGATTTCCGGTTTGGCTCAAAT 494
|||||| ||||||||||| ||||||||||| || || ||| ||||| |||||||||||||
Sbjct 422 AATTGGTCCTTATGTTTGCGCTGAATGGAACTTCGGAGGG-TTTCCTGTTTGGCTCAAAT 480
Query 495 TTGTTCCCGGTATGGCT-TTTAGGACGGATAATGAACCTTTCAAGGCTGCAATG-AAGAA 552
|||||||| ||||| | |||||||| || |||||||||||||||||||||||| || ||
Sbjct 481 ATGTTCCCGATATGG-TGTTTAGGACCGACAATGAACCTTTCAAGGCTGCAATGCAA-AA 538
Query 553 ATTCACTGAAAAGATTGTATGGATGATGAAAGCAGAAAAGTTGTTTCAAACTCAAGGAGG 612
||||||||| |||||||| |||||||||||| |||||| || ||| | |||||||||||
Sbjct 539 ATTCACTGAGAAGATTGTGGGGATGATGAAAGAAGAAAAATTATTTGAGACTCAAGGAGG 598
Query 613 ACCCATCATTCT-TGCACAGATTGAGAATGAATATGGACCAGTGGAATGGGAAATAGGAG 671
|||||||||||| | ||||||| |||||||| ||||||||| | || ||||| |||||||
Sbjct 599 ACCCATCATTCTGT-CACAGATAGAGAATGAGTATGGACCAATAGAGTGGGAGATAGGAG 657
Query 672 CACC-GGGAAAGGCTTATACAAAATGGGTAGCTCAAATGGCATTAGGACTCTCAACTGGT 730
|||| ||||| ||| || ||||||||||||||| |||||||| ||||||||| || |||
Sbjct 658 CACCAGGGAA-GGCATACACAAAATGGGTAGCTGAAATGGCACAAGGACTCTCCACCGGT 716
Query 731 GTTCCATGGATTATGTGCAAGCAAGAAGATGCTCCTGG-TCCTATCAT-AGACACATGCA 788
|| ||||||||||||||||||||||| ||||||||| || ||| || | |||||||||
Sbjct 717 GTCCCATGGATTATGTGCAAGCAAGATGATGCTCCTAACTC-TATTATTA-ACACATGCA 774
Query 789 ATGG-TTATTACTGTGAAGA-TTTCAAACCGAACTCA-ATCAACAAGCC-AAAGATGTGG 844
|||| || ||| ||||| || ||||||||| ||||| | ||| ||||| ||| ||||||
Sbjct 775 ATGGGTT-TTATTGTGA-GAATTTCAAACCAAACTCGGA-CAATAAGCCGAAA-ATGTGG 830
Query 845 ACAGAGAATTGGACTGGTTGGTACACAGATTTTGGAGGTGCGGTACCATACAGACCAGTC 904
|||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct 831 ACAGAGAACTGGACTGGTTGGTTCACAGAGTTTGGAGGTGCGGTACCATACAGACCAGCC 890
Query 905 GAAGATATTGCAT-ACTCCGTTGCACGATTTATCCAAAAAGGAGGTTCCCTCGTCAATTA 963
||||| ||||| | | ||||| || || || || || || || || ||| || |||| ||
Sbjct 891 GAAGACATTGCCTTA-TCCGTGGCTCGCTTCATACAGAACGGTGGCTCCTTCATCAACTA 949
Query 964 CTATATGTATCATGGAGGAACAAATTTCGACAGAACAGCCGGTGAGTTCATGGCTTCAAG 1023
||||||||| ||||||||||| || |||||||||||||| || || ||||| || | ||
Sbjct 950 CTATATGTACCATGGAGGAACCAACTTCGACAGAACAGCTGGCGAATTCATCGCCACCAG 1009
Query 1024 CTATGACTATGACGCTCCTCTCGATGAATACGGCTTACCAAGAGAACCAAAGTATAGTCA 1083
|||||||||||| |||||||| |||||||| || || || |||||||| |||||||||||
Sbjct 1010 CTATGACTATGATGCTCCTCTTGATGAATATGGGTTGCCGAGAGAACCTAAGTATAGTCA 1069
Query 1084 CTTGAAA-G-CATTGCATAAAGCCATCAAACT-TAGTGAGCCAGCTTTGCTTTCTGCTGA 1140
||||||| | | | |||||| | |||||| || | |||| || || ||| | ||||||||
Sbjct 1070 CTTGAAAAGGC-T-GCATAAGGTCATCAAGCTCT-GTGAACCGGCATTGGTCTCTGCTGA 1126
Query 1141 TGCTACCGTTACATCGCTTGGAGCTAAGCAAGAAGCTTATGTGTTCTGGTCTAAATCATC 1200
| |||| || |||||||| || | ||| ||||||||| |||||||| |||| | |||||
Sbjct 1127 TCCTACGGTCACATCGCTCGGCGATAAACAAGAAGCTCATGTGTTCAAGTCTCAGTCATC 1186
Query 1201 TTGTGCTGCGTTTT-TATCGAAC-A-AAGA-TGAGAACTCTGCAGCGAGAGT-TCTGTTC 1255
||| ||||| |||| | || || | || | | || ||||| || ||||| || |||
Sbjct 1187 TTGCGCTGC-TTTTCTCTCAAATTACAACACT-AGT--TCTGCTGCAAGAGTCTC-GTTT 1241
Query 1256 CGTGGAT-TCCCATATGATTTGCCTCCTTGGTCAGTCAGTATTTTACCTGATTGCAAAAC 1314
| |||| | | ||||||| ||||||||||||| ||||||||| |||| || ||||||||
Sbjct 1242 GGCGGATCTAC-ATATGATCTGCCTCCTTGGTCTGTCAGTATTCTACCCGACTGCAAAAC 1300
Query 1315 AGAGGT-TTACAACACTGCAAAGGT-CAA-TGC--AC--CAAGCGTACACAGGAATATGG 1367
||| | |||||||||||||||||| || | | || ||||| |||||| ||| ||||
Sbjct 1301 TGAG-TATTACAACACTGCAAAGGTACAGGTCCGTACATCAAGCATACACATGAAGATGG 1359
Query 1368 TTCCTACTGGTACTAA-ATTCTCTTGGGGATCATTCAACGAAGCGACTCCTACAGCGAAT 1426
||||||| || | ||||||||||||||||| |||||||| || |||| | || ||
Sbjct 1360 TTCCTACAAACAC-ACCATTCTCTTGGGGATCATACAACGAAGAGATTCCTTCTGCAAAC 1418
Query 1427 GA-AGCTGGTACGTTTGCAAGAA-ACGGGCTTGTGGAACAAATAAGCATGACTTGGGACA 1484
|| | |||||| ||| || || | |||||||||||||| |||||||| || | ||||
Sbjct 1419 GACAA-TGGTACCTTTTCAC-AAGATGGGCTTGTGGAACAGATAAGCATCACCAGAGACA 1476
Query 1485 A-ATCTGACTATTTTTGGTATATAACAGACATTACAATCGGTTCCGG-TGAGACATTTT- 1541
| | | || ||||| |||||| | ||||||||||| ||| || || | ||| | | ||
Sbjct 1477 AGA-CAGATTATTTCTGGTATCTGACAGACATTACGATCAGT-CCTGATGAAA-AGTTCC 1533
Query 1542 TGAAGACTGGTGATTCACC-TCTTCTTAC-AGTTATGTCAGCTGGACATGCTCTTCATGT 1599
||| ||||||| ||| ||||||||| | || ||||||||| ||||||||||||||
Sbjct 1534 TGA---CTGGTGAAG-ACCCTCTTCTTACTA-TTGGGTCAGCTGGGCATGCTCTTCATGT 1588
Query 1600 GTTTGTCAATGGTCAGCTTTCAGGAACTGCTTATGGAGGACTTGACCACCCAAAACTAAC 1659
|| || ||||||||||| ||||||| ||||||||| ||| || | ||||| |||||
Sbjct 1589 ATTCGTTAATGGTCAGCTAGCAGGAACCGCTTATGGATCACTGGAGAAACCAAAGCTAAC 1648
Query 1660 CTTTAGCCAGAAGATCAAACTACATGCAGGTGTCAACAAGA-TTGCTCT-TCTGAGTGTT 1717
||||| |||||||||||| |||||||||| || ||||| | ||||||| | ||||| ||
Sbjct 1649 ATTTAGTCAGAAGATCAAATTACATGCAGGGGTTAACAA-ACTTGCTCTAT-TGAGTATT 1706
Query 1718 GCAGTGGGTCTCCCGAACGTTGGTACACATTTTGA-ACAGTGGAATAAAGGAGTTCTTGG 1776
|||| |||||| |||||||||||| |||| ||| || ||||||| |||||||||||
Sbjct 1707 GCAGCGGGTCTTCCGAACGTTGGTGTGCATTATGAGACT-TGGAATACTGGAGTTCTTGG 1765
Query 1777 TCCGGTCACATTGAAGGGAGTAAACTCAGGAACATGGGACATGTCGAAATGGAAATGGTC 1836
|| || ||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1766 CCCAGTGACACTGAAGGGAGTTAACTCCGGAACATGGGACATGTCTAAATGGAAATGGTC 1825
Query 1837 CTATAAGATTGGTG-TAAAGGGTGAGGCTTTGAGTC-TTCATACC--AACACAGAGAGTT 1892
|| ||||||||| ||| |||||| | | |||| | |||||||| ||| | | |||||
Sbjct 1826 TTACAAGATTGGTACTAA-GGGTGAAGATCTGAG-CATTCATACCGTAAC-CGG-GAGTT 1881
Query 1893 CCGGTGTGAGA-TGGACTCAAGGATCATTTGTGGCGAAGAAGCAACCATTAACCTGGTAC 1951
|| ||| || |||| ||||| |||| ||||| || |||||||| || |||||||||
Sbjct 1882 CCACCGTG-GAATGGAAAGAAGGACCATTAGTGGCCAAAAAGCAACCTTTGACCTGGTAC 1940
Query 1952 AAGTCTACGTTTG-CTACACCAGCAGGAAATGAACCATTGGCTTTAGACATGAACACAAT 2010
|||||||| |||| | |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1941 AAGTCTACTTTTGAC-ACACCAACAGGCAATGAACCATTGGCTTTAGACATGAACACAAT 1999
Query 2011 GGGAAAAGGTCAAGTTTGGATAAACGGT-AGAAATATTGGACGTCATTGGCCTGCATATA 2069
||| ||||||||| ||||||||||| |||| |||||||| || ||||| |||||||
Sbjct 2000 GGGGAAAGGTCAAACATGGATAAACGGGCAGAAC-ATTGGACGCCACTGGCCGGCATATA 2058
Query 2070 AAGCTCAAGG-ATCTTGTGGACGTTGTAACTACGCTGGAACTTTCGAC-GCA-AAGAAAT 2126
||||| || | | | | ||| || | |||||| || |||||| || | | |||||||
Sbjct 2059 CAGCTCGTGGGAAAT-GCGAACGCTGCAGCTACGCCGGGACTTTC-ACCG-AGAAGAAAT 2115
Query 2127 GCTTAAGTAATTGTGGTGAAGCTTCACAAAGATGGTACCATGTACCTCGTTCATGGCTTA 2186
| || ||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |
Sbjct 2116 GTTTGAGTAACTGTGGAGAAGCTTCTCAAAGATGGTATCATGTGCCTCGTTCATGGCTAA 2175
Query 2187 AGTCT-C-AA-AACCTTATAGTTGTG-TTCGAAGAGTTAGGTGGTGATCCTAACGGAATC 2242
|| | | || |||||| ||||||| || ||||| | |||||||| || || || |||
Sbjct 2176 AGCCAACTAATAACCTTGTAGTTGTACTT-GAAGAATGGGGTGGTGAACCCAATGGGATC 2234
Query 2243 TCT-TTGGTTAAAAGAA 2258
||| ||| | |||||||
Sbjct 2235 TCTCTTG-TAAAAAGAA 2250
> Ahg485655 jgi|Araly1|485655|fgenesh2_kg.5__1647__AT3G52840.1
Length=2417
Score = 1620 bits (877), Expect = 0.0
Identities = 1794/2228 (81%), Gaps = 98/2228 (4%)
Strand=Plus/Plus
Query 85 GAAAAT-GGTATTGAACTTTAGAGAT-AAGTCCTGCATTTTTCTGGCAATTCTT-TGTTG 141
|||||| ||| || | ||||||||| ||| | || |||||||| |||||| || ||||
Sbjct 129 GAAAATGGGT-GTGCATTTTAGAGATAAAG-CATGGATTTTTCTAGCAATT-TTGTGTT- 184
Query 142 TTT-ATCATTGAGTT-GTATAGTAAAAGCA-TCAGTCTCTTATGATCGTAAAGCTGTGAT 198
||| ||| |||| || || | | ||||| | ||| ||||||||| ||||||| | ||
Sbjct 185 TTTCATCGTTGATTTGGTCGACT-GAAGCAGT-GGTCACTTATGATCATAAAGCTTTAAT 242
Query 199 CATCAATGGACAAAGAAGAATCCTTCTCTCCGGTTCCATTCACTATCCACGAAGCACCCC 258
|||||||||||| ||||| |||||| |||||||||| |||||||||||| ||||||| ||
Sbjct 243 CATCAATGGACAGAGAAGGATCCTTATCTCCGGTTCTATTCACTATCCAAGAAGCACTCC 302
Query 259 TGAGATGTGGCCTGGCCTAATACAGAAAGCCAAAGAAGGAGGCTTGGATGTTATTGAGAC 318
|||||||||||||| || ||| |||| |||||||||||||| ||||||||||| | ||
Sbjct 303 TGAGATGTGGCCTGATCTTATAAAGAAGGCCAAAGAAGGAGGTTTGGATGTTATACAAAC 362
Query 319 TTATGTTTTTTGGAATGGCCATGAACCTTCTCCTGGACAA-TATTATTTTGGA-GACAGG 376
||||||||| |||||||| |||||||||||||||||| || ||||||||| | || ||
Sbjct 363 TTATGTTTTCTGGAATGGACATGAACCTTCTCCTGGA-AATTATTATTTT-CAGGATAGA 420
Query 377 TATGATTTGGTTAAGTTCATCAAGTTGGTGCACCAAGCTGGTCTCTATGTTAATCTCAGA 436
|||||| ||||||| |||| |||| ||||||| ||||||||||| ||| || |||| |||
Sbjct 421 TATGATCTGGTTAAATTCACCAAGCTGGTGCATCAAGCTGGTCTATATCTTGATCTAAGA 480
Query 437 ATTGGCCCTTATGTTTGTGCTGAATGGAATTTTGGGGGATTTCCGGTTTGGCTCAAATTT 496
||||| || ||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 481 ATTGGTCCATATGTTTGTGCCGAGTGGAATTTTGGGGGATTTCCGGTTTGGCTCAAATAT 540
Query 497 GTTCCCGGTATGGCTTTT-AGGACGGATAATGAACCTTTCAAGGCTGCAATGAAGAA-AT 554
||||| ||||| | |||| || || ||||||||||||||||| ||||||| | || ||
Sbjct 541 GTTCCTGGTATTG-TTTTCAGAACAAATAATGAACCTTTCAAGATTGCAATGCA-AAGAT 598
Query 555 TCACTGAA-AAGATTGTATGGAT--GATGAAAGCAGAAAAGTTGTTTCAAACTCAAGGAG 611
|||| || |||||||| |||| |||||||| ||||||| ||||| | ||||||||||
Sbjct 599 TCACA-AAGAAGATTGT--GGATATGATGAAAGAAGAAAAGCTGTTTGAGACTCAAGGAG 655
Query 612 GACCCATCATTCT-TGCACAGATTGAGAATGAATATGGACCAGTGGAATGGGAAATAGGA 670
||||||||||||| | ||||||| |||||||| ||||||||| |||||||||| || |||
Sbjct 656 GACCCATCATTCTCT-CACAGATAGAGAATGAGTATGGACCAATGGAATGGGAGATGGGA 714
Query 671 GCACCGGGAAAGGCTTA-TACAAAATGGGTAGCTCAAATGGCATTAGGACTCTCAACTGG 729
||| | ||||||||||| | |||||||| |||| |||||||||| ||||| || || ||
Sbjct 715 GCAGCAGGAAAGGCTTACT-CAAAATGGACAGCTGAAATGGCATTGGGACTGTCCACAGG 773
Query 730 TGTTCCATGGATTATGTGCAAGCAAGAAGATGCTCCTGGTCCTATCATAGACACATGCAA 789
||| ||||||||||||||||||||||| ||||||||| || || ||||||||||||||
Sbjct 774 TGTCCCATGGATTATGTGCAAGCAAGAGGATGCTCCTTACCCCATTATAGACACATGCAA 833
Query 790 TGG-TTATTACTGTGAAGATTTCAAACCGAACTCAATCAACAAGCCAAAGATGTGGACAG 848
||| || ||||||||| | ||||||||| |||||| |||||||||| ||| |||||||||
Sbjct 834 TGGCTT-TTACTGTGAGGGTTTCAAACCAAACTCAGTCAACAAGCCGAAGTTGTGGACAG 892
Query 849 AGAATTGGACTGGTTGGTACACAGATTTTGGAGGTGCGGTACCATACAGACCAGTCGAAG 908
|||| ||||||||||||| ||| || ||||||||| || ||||| | |||||||||||||
Sbjct 893 AGAACTGGACTGGTTGGTTCACGGAATTTGGAGGTCCGATACCAAATAGACCAGTCGAAG 952
Query 909 ATATTGCATACTCCGTTGCACGATTT-ATCCAAAAAGGAGGTTCCCTCGTCAATTACTAT 967
| ||||| | |||||| || || ||| || || || || ||||| | | ||||| |||
Sbjct 953 ACATTGCGTTCTCCGTGGCTCG-TTTCATACAGAACGGTGGTTCTTTTATGAATTATTAT 1011
Query 968 ATGTATCATGGAGGAACAAA-TTTCGACAGAACAGCCGGTGAGTTCATGGCTTCAAGCTA 1026
|||||| ||||||| || || ||| || ||||||||||||| ||||| || |||||||
Sbjct 1012 ATGTATTATGGAGGGACCAACTTT-GATAGAACAGCCGGTGTTTTCATCGCCACAAGCTA 1070
Query 1027 TGACTATGACGCTCCTCTCGATGAATACGGCTTACCAAGAGAACCAAAGTATAGTCACTT 1086
|||||| || |||||||| || ||||| || |||| |||||||| ||||||||||||||
Sbjct 1071 TGACTACGATGCTCCTCTTGACGAATATGGATTACTGAGAGAACCCAAGTATAGTCACTT 1130
Query 1087 GAAAGCA-TTGCATAAAGCCATCAAACT-TAGTGAGCCAGCTTTGCTTTCTGCTGATGCT 1144
||||| | || ||||| | ||| || || | |||| || || ||| | || | |||| |
Sbjct 1131 GAAAG-AGTTACATAAGGTCATTAAGCTGT-GTGAACCTGCATTGGTCTCCGTTGATCCC 1188
Query 1145 ACCGTTACATCGCTTGGAGCTAAGCAAGAAGCTT-ATGTGTTCTGGTCTAA-ATCATCTT 1202
||| | |||||| | || | ||| ||||||| || |||||||| ||| || | | ||||
Sbjct 1189 ACCATCACATCGATCGGCGATAAACAAGAAG-TTCATGTGTTCAAGTCCAAGA-CTTCTT 1246
Query 1203 GTGCTGCGTTTTTATCGAACAAAGATGA-GAACTCTGCAGCGAGAGTTCTGTTCCGTGGA 1261
| ||||| ||| | |||||| | ||| | || |||||||| ||| || |||| | |||
Sbjct 1247 GCGCTGCATTTCTCTCGAACTACGAT-ACGAGTTCTGCAGCAAGAATTATGTTTAGGGGA 1305
Query 1262 TTCCCATATGATTTGCCTCCTTGGTCAGTCAGTATTTTACCTGATTGCAAAACAGAGGT- 1320
|| || |||||||||||||||||||| |||||||||||||| || |||||||| ||| |
Sbjct 1306 TTTCCGTATGATTTGCCTCCTTGGTCTGTCAGTATTTTACCAGACTGCAAAACCGAG-TA 1364
Query 1321 TTACAACACTGCAAAGGTCAATGCACCAAGCGTACACAGGAATATGGTTCCTACTGGTAC 1380
|||||||||||||||| || |||||||| | ||| | ||| |||| ||||||| | ||
Sbjct 1365 TTACAACACTGCAAAGATCCGTGCACCAACCATACTTATGAAGATGGCTCCTACTAGCAC 1424
Query 1381 TAAATTCTCTTGGGGATCATTCAACGAAGCGACTCC-TACAGCGAATGAAGCTGGTACGT 1439
||||| || |||| ||| | |||||||| || || | | | ||||| | |||||| |
Sbjct 1425 GAAATTTTCCTGGGAATCGTACAACGAAG-GAAGCCCTTCTTCAAATGATGATGGTACAT 1483
Query 1440 TTGCAAGAA-ACGGGCTTGTGGAACAAATAAGCATGACTTGGGACAAATCTGACTATTTT 1498
||| | || | || ||||||||||||||||||||||| | || ||| | || |||||
Sbjct 1484 TTGTTA-AAGATGGTCTTGTGGAACAAATAAGCATGACCAGAGATAAAACAGATTATTTC 1542
Query 1499 TGGTATATAACAGACATTACAATCGGTTCCGGTGAGA-CATTTTTGAAGACTGGTGATTC 1557
|||||| |||| ||||||||||| ||||| | ||||| | ||||||||||||||||||
Sbjct 1543 TGGTATTTAACGGACATTACAATTGGTTCTGATGAGAGC-TTTTTGAAGACTGGTGATA- 1600
Query 1558 A-CCTCTTCTTAC-AGTTATGTCAGCTGGACATGCTCTTCATGTGTTTGTCAATGGTCAG 1615
| ||||||||||| | || | || ||||| |||||||||||||| || || ||||| | |
Sbjct 1601 ATCCTCTTCTTACCATTTTT-TCGGCTGGGCATGCTCTTCATGTATTCGTTAATGGCCTG 1659
Query 1616 CTTTCAGGAACTGCTTATGGAGGACTTGACCACC-CAAAACTAACCTTTAGCCAGAAGAT 1674
||| |||||||| | ||||||| ||| || || | |||| || || ||||| || |||||
Sbjct 1660 CTTGCAGGAACTTCCTATGGAGCACT-GAGCAACTCAAAGCTCACATTTAGTCAAAAGAT 1718
Query 1675 CAAACT-ACATGCAGGTGTCAACAAGA-TTGCTCTTCTGAGTGTTGCAGTGGGTCTCCCG 1732
|||| | | || ||| ||||||| | ||||||| || ||| |||||||||||| |||
Sbjct 1719 CAAATTGAG-TGTAGGCATCAACAA-ACTTGCTCTGCTAAGTACTGCAGTGGGTCTTCCG 1776
Query 1733 AACGTTGGTACACATTTTGA-ACAGTGGAATAAAGGAGTTCTTGGTCCGGTCACATTGAA 1791
|||| |||| |||| || || ||||||| || ||||| || || |||||||||||
Sbjct 1777 AACGCTGGTGTGCATTACGAGACT-TGGAATACTGGTGTTCTAGGACCAGTCACATTGAA 1835
Query 1792 GGGAGTAAACTCAGGAACATGGGACATGTCGAAATGGAAATGGTCCTATAAGATTGGTGT 1851
|||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||||| |
Sbjct 1836 GGGAGTTAACTCTGGAACATGGGACATGTCTAAATGGAAGTGGTCTTACAAGATTGGTAT 1895
Query 1852 AA-AGGGTGAGGCTTTGAGTCTTCATACCA-ACACAGAGA-GTTCCGGTGTGAGATGG-- 1906
| ||| ||| ||| |||| ||||||||| | | | || |||| | ||||| ||||
Sbjct 1896 TAGAGG-TGAAGCTATGAGCCTTCATACCTTAG-CTG-GAAGTTCAGCTGTGAAATGGTG 1952
Query 1907 -ACTCAA-GGATCATTTGTGG-CGAAGAAGCAACCATTAACCTGGTACAAGTCTACGTTT 1963
| | || |||||||| |||| | |||||| |||| || ||||||||||||||| | |||
Sbjct 1953 GA-TAAAAGGATCATTCGTGGTC-AAGAAGGAACCCTTGACCTGGTACAAGTCTTCTTTT 2010
Query 1964 GCTACACCAGCA-GGAAATGAACCATTGGCTTTAGACATGAACACAATGGGAAAAGGTCA 2022
| |||||| | | || || |||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 2011 GATACACC-GAAAGGCAACGAACCACTGGCTTTGGACATGAACACAATGGGGAAAGGTCA 2069
Query 2023 AGTTTGGATAAACGGTAGA-AATATTGGACGTCATTGGCCTGCATATAAAGCTCAAGG-A 2080
||||||| |||| || | | || |||||||| || |||||||| || | |||| || |
Sbjct 2070 AGTTTGGGTAAATGG-ACATAACATTGGACGCCACTGGCCTGCCTACACGGCTCGTGGGA 2128
Query 2081 TCTTGTGGACGTTGTAACTACGCTGGAACTTT-CGACGCA-AAGAAATG-CTTAAGTAAT 2137
|| | ||||| || || || ||||||| ||| | ||| | |||||||| || | || |
Sbjct 2129 ACT-GCGGACGCTGCAATTATGCTGGAA-TTTACAACG-AGAAGAAATGTCTCA-GTCAC 2184
Query 2138 TGTGGTGAAGCTTCACAAAGATGGTACCATGTACCTCGTTCATGGCTTAAGTC-TCAA-- 2194
||||||||| |||||||||||||||||||||| |||||||||||||| || | |
Sbjct 2185 TGTGGTGAACCTTCACAAAGATGGTACCATGTGCCTCGTTCATGGCTAAAACCATTTGGG 2244
Query 2195 AACCTTATAGTTGTGTTCGAAGAGTTAGGTGGTGATCCTAAC-GGAATCTCT-TTGGTTA 2252
|||||| ||||| | || || || | ||||||||||| || ||||||||| ||| ||
Sbjct 2245 AACCTTCTAGTTATATTTGAGGAATGGGGTGGTGATCC-AAGTGGAATCTCTCTTG-TTG 2302
Query 2253 AAAGAACA 2260
||||||||
Sbjct 2303 AAAGAACA 2310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94311446620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5