BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56880.1
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495778 jgi|Araly1|495778|fgenesh2_kg.8__1594__AT5G56880.1 754 0.0
> Ahg495778 jgi|Araly1|495778|fgenesh2_kg.8__1594__AT5G56880.1
Length=585
Score = 754 bits (408), Expect = 0.0
Identities = 541/602 (90%), Gaps = 22/602 (4%)
Strand=Plus/Plus
Query 7 TGTGTAAGAAGAAAATCACAACAATATTATTGTACGGTCTCTCTCTCATTTTTGTTAATT 66
|||||||||||||||||||||||||| ||||||||||||||||| | ||||| || |||
Sbjct 1 TGTGTAAGAAGAAAATCACAACAATAATATTGTACGGTCTCTCTTTTTTTTTTTTTGATT 60
Query 67 C-T-TT-CTCACTTGATTTGAGAGAAAATGGAAGAAATGAGGAACAAAGTAGACGAGAAC 123
| | || ||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 61 CTTCTTCCTCTCTTGAGTTGAGAGAAAATGGAAGAAATGAGGAAGAAAGAAGATGAGAA- 119
Query 124 GGAAAAAATACGACCGCGAAGGAAGTGACGAAGAAGACGACGATGCTCGTTGCCGGAGAG 183
|| || |||||||||||||| | || |||||||| |||| |||||||||
Sbjct 120 GG--------CG---GCGAAGGAAGTGACTACGACGACGACGA---TCGTCGCCGGAGAG 165
Query 184 TATGACGAGTATACACCGGATGAAATCATG-AGTCTCGTTGAGTCTTCTTCACCGACAAT 242
| ||||||||||| || || ||||||||| || ||||||||||||||||||||||||||
Sbjct 166 GACGACGAGTATACGCCAGACGAAATCATGAAG-CTCGTTGAGTCTTCTTCACCGACAAT 224
Query 243 GACGACGACGGAGATCGAAGGAACTAACTTTTCCGGCGAGGGGAGTTTTAGAGTGAGGTT 302
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 225 GACGACGACGGATATCGAAGGAACTAACTTTTCTGGCGAGGGGAGTTTCAGAGTGAGGTT 284
Query 303 TATCGACGACCCGTACGCTATGCCGGTGGTTGTTCAGTCGTCTTCCGGTTACATCACGAT 362
||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 285 TATCGACGATCCGTACGCGGTTCCGGTGGTTGTTCAGTCATCTTCCGGTTACATCACGAT 344
Query 363 CAATGTCAACGAAGAAAGCTGTGGTCCGTCCTTTTCAGACAGCGACTCTTCCGTCATGGC 422
||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 345 CAACGTCAATGAAGAGAGCTGTGGTCCGTCGTTTTCAGACAGCGACTCTTCCGTCATGGC 404
Query 423 AAGCGTCGACGCTAGT-GGTCTGTTCGGTTGCTGTTTCGAATACGGAAACGAGAAAGGCG 481
|||||||||||| ||| ||| | |||||||||||||||||||||||| |||||||||||
Sbjct 405 AAGCGTCGACGCAAGTGGGT-TATTCGGTTGCTGTTTCGAATACGGAGGCGAGAAAGGCG 463
Query 482 GCGCGTGGAGTACAAACGAGGTGAGAGCGAGTGAGTATGAGTGGAACGACGATATGTTGG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GCGCGTGGAGTACAAACGAGGTGAGAGCGAGTGAGTATGAGTGGAACGACGATATGTTGG 523
Query 542 CGAGGTTTCTAGGCGAAGACTGTGTTTGACCGTTTTGTCGTATTTTCGAGAAAGCATGAT 601
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 524 CGAGGTTTCTAGGTGAAGACTGTGTTTGACCGTTTTGTCGTATTTTGGAGAAAGCATTAT 583
Query 602 AT 603
||
Sbjct 584 AT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22378152279
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5