BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56900.2
Length=2119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495780 jgi|Araly1|495780|fgenesh2_kg.8__1596__AT5G56900.2 3114 0.0
> Ahg495780 jgi|Araly1|495780|fgenesh2_kg.8__1596__AT5G56900.2
Length=2113
Score = 3114 bits (1686), Expect = 0.0
Identities = 2009/2152 (93%), Gaps = 73/2152 (3%)
Strand=Plus/Plus
Query 1 ATGGCGCCCAGAATTTTACTCTGTGGAGATCCTCTTGGACGTCTCAATCAGCTCTTCAAG 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCCCAGAATTTTGCTCTGCGGAGATCCTCTTGGACGTCTCAATCAGCTCTTCAAG 60
Query 61 CGTGTCCAATCGGTTAGCAAATCTGCTGGTCCCTTTGATGCTCTGATTTGCGTCGGACAG 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 61 CGTGTCCAATCGGTTAGCAAATCTGCTGGTCCATTTGATGCTCTGATTTGCGTCGGCCAG 120
Query 121 TTTTTTCCCGATTCTCCAGAAATTCTAGATGAGTTTTTGGATTACGTCGAAGGTCGAGCT 180
||||||||||||||||| ||| | ||||| |||||| |||||||||| ||||||||| ||
Sbjct 121 TTTTTTCCCGATTCTCCGGAACTCCTAGACGAGTTTCTGGATTACGTTGAAGGTCGAACT 180
Query 181 CAAGTTCCGATTCCTACTTACTTCACCGGAGACTATGGTGTCGTCGCACCCAAAATCTTA 240
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| ||
Sbjct 181 CAAGTTCCGATTCCTACTTACTTCACCGGCGACTATGGCGTCGTTGCCCCCAAAATCCTA 240
Query 241 TCGACGACTTCGAAGAAAGCTGAGAATCAAGGGTTTAAGATGGATGGACTCGAAGTTTGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGACGACTTCGAAGAAAGCTGAGAATCAAGGGTTTAAGATGGATGGACTCGAAGTTTGC 300
Query 301 CACAATTTGTTTTGGTTAAGAGGAAGTGGGAAGTTCAGTCTCCATGGTTTGTCTGTTGCT 360
||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 301 CACAATTTGTTTTGGTTAAGAGGAAGTGGGAAGTTCACTCTTCAAGGTTTGTCTGTTGCT 360
Query 361 TACTTATCTGGTAGACAATCATCTGAGAGTCAATTTGGGAAATATAGTCAAGATGATGTT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TACTTATCTGGTAGACAATCATCTGATAGTCAATTTGGGAAATATAGTCAAGATGATGTT 420
Query 421 GATGCTCTTCGTGCACTTGCTGAGGAACCTGGAGGAGTTGATTTG---------T-T-C- 468
|||||||||||||||||||||||||||||||||| ||||||||| | | |
Sbjct 421 GATGCTCTTCGTGCACTTGCTGAGGAACCTGGAGTTGTTGATTTGTTCTTAACATATCCT 480
Query 469 -------T-TA-ACTAATGAATGGCCTGCGGGAGTCACAAACAGAGCTGCGGTTTCTGAT 519
| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TTTTTTTTGTATACTAATGAATGGCCTGCGGGAGTTACAAACAGAGCTGCGGTTTCTGAT 540
Query 520 ATTCCTGTTGGAATTTCTGATTCCTCTTGTAGTGATTCCACTGTTTCTGAGTTGGTAATG 579
|||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 ATTCCTGTAGGAGTTTCTGATTCCTCTTGTAGTGATTCCACTGTTTCTGAATTGGTAATG 600
Query 580 GAAGTTAAACCTCGCTATCACATTGCAGGTTCTATGGGGGTATTTTATGCCCGTGAACCT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGTTAAACCTCGCTATCACATTGCAGGTTCTATGGGGGTATTTTATGCCCGTGAACCT 660
Query 640 TACCTCAACGCTGAATCTACTCATGTAACTCGCTTTATTGGTCTTGCTCAAGTTGGAAAT 699
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACCTCAACGTTGAATCTACTCATGTAACTCGCTTTATTGGTCTTGCTCAAGTTGGAAAT 720
Query 700 AAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCA 780
Query 760 GCAGAGCTTAGTGCAAAGCCTCCAAAAACTACGCTATGGCCTTATAATTTACAAGATG-G 818
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 781 GCAGAGCTTAGTGCAAAGCCTCCAAAAACTACACTATGGCCTTATAATTTACAAGA-GAG 839
Query 819 AGCTGCTGAATCGAAGAAGAGGCCAAACGATAGTGACTCTGATTCACAGTATTGGAGGTA 878
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 840 TGCTGCTGAATCGAAGAAGAGGCCAAACGACAGTGAATCTGATTCACAGTATTGGAGGTA 899
Query 879 TGATGTCCCAAAGCGGCAAAAGAGTGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGT 938
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 900 TGATGTCTCAAAGCGGCAAAAGAATGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGT 959
Query 939 CTGCTCAGGTTCCTGTCCTCGTGGTGAAGATTGCCATTTCCAACACAACGCTGAAGCAAG 998
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTGCTCAGGTTCCTGTCCTCGGGGTGAAGATTGCCATTTCCAACACAACGCTGAAGCAAG 1019
Query 999 AGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCAAAGGTAAGTGTGAAAAAGG 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCAAAGGTAAGTGTGAAAAAGG 1079
Query 1059 CCCAGAGTGCAGCTACAAGCATGAGTTTCAAGATGAAAGTAGCATACAAAGGAAGCCCAG 1118
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 CCCAGAGTGCAGCTACAAGCATGAGTTTCAAGATGAAAGTAGCATACAAAGAAAGCCCAG 1139
Query 1119 ATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTGGA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTGGA 1199
Query 1179 GTCACATTTAATCGTCAGTGTAGGGGAAAGTTTTTATTGTGCTCTACCCAAAGGTTCGCT 1238
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1200 GTCACATTTAATCGTCAGTGTAGGGGAAAGTTTCTATTGTGCTCTACCCAAAGGTTCACT 1259
Query 1239 AGTCGAAGATCACATATTGATAATCCCAATCGAACATTTGCCCAATACTCTGGTTTTATC 1298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AGTCGAAGACCACATATTGATAATCCCAATCGAACATTTGCCCAATACTCTGGTTTTATC 1319
Query 1299 CCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAAGAG 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1320 CCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAACAG 1379
Query 1359 CCAAGGAAATGATGCAGTTTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCT 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CCAAGGAAATGATGCAGTTTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCT 1439
Query 1419 CCAAGTTGTTCCTGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTGGC 1478
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CCAAGTTGTTCCGGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTGGC 1499
Query 1479 GGCTGAAAAACTGGGCTTTAAGCTTGTGACTAAAAAGTTTAATGATAGTACTGATGGCAG 1538
|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct 1500 GGCTGAAAAACTGGGCTTTAAGCTTGTGACGAAAAAGTTTAGTGATAGTTCTGATGGCAG 1559
Query 1539 AAAATATCTGCAGAAGGAATATAATGCGGCATTGGGTCTCTTCTATGTGGAACTTCCTGA 1598
||| ||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 1560 AAAGTATCTGCAGAAGGAATACAATGCAGCTTTGGGGCTCTTCTATGTGGAACTTCCTGA 1619
Query 1599 TGGAACTGTGCTATCACACACCTTGGAAGAAAACGAAGTATTCCCTGCGCAGTTTGGACG 1658
|||||| ||| |||| |||||| ||||||| ||||||||||||||||| || ||||||||
Sbjct 1620 TGGAACGGTGTTATCTCACACCCTGGAAGAGAACGAAGTATTCCCTGCACAATTTGGACG 1679
Query 1659 GGAGGTTCTAGCAGGGTTGCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAAT 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GGAGGTTCTAGCAGGGTTGCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAAT 1739
Query 1719 TAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTTGA 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTTGA 1799
Query 1779 CCCTTGCCAATAACCTTACTGAACAAAAGATACGATTAGATGCTATCTTGTGGGCATCAA 1838
|||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||
Sbjct 1800 CCCTTGCCAATAACCTTACTGAACAAAAGATACGATCATATACTATCTTGTGGGTATCAA 1859
Query 1839 TCAT--GCTAAACTCAGTCTCCAGTGCACTCAGGT---------CAGAAGCTGAATCATG 1887
|||| |||||||||||| |||||| ||||||||| | ||||||||||||||
Sbjct 1860 TCATATGCTAAACTCAGTGTCCAGTACACTCAGGTATTGTGTTTCTGAAGCTGAATCATG 1919
Query 1888 CGA-AGCATCGTCGTTTAGAAATAGGTTTGTCAACAGTGTTCTTTGTTTGGTCAGTTAAA 1946
||| | ||||||| |||||||||||||| || || || ||||||||
Sbjct 1920 CGACA-CATCGTCCTTTAGAAATAGGTT---CA----TG------GT-----CAGTTAAA 1960
Query 1947 AGCTAACAGTCTTCCATCAGTTTCCTTACTATTTTACTGGTTAGTTGTTACCTATCTTGT 2006
|||||||||||||||||| ||| |||||||||||| | | | | || |
Sbjct 1961 AGCTAACAGTCTTCCATCTGTTACCTTACTATTTT--T------------C-T-T-TT-T 2002
Query 2007 TCTTCTATTAAACAttttttttGATATATTATTGTTTGTTGAGATGTAAGAGAGTGATCA 2066
|||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 -CTTCTAGTAAACACTTGCTTTGATATATTATTGTTTGTTGAGATGTAAGAGAGTGATCA 2061
Query 2067 TCACAGAAACACACAACAGTCATGGTAGAATTTGCTTCACCTGTTTTCACCT 2118
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2062 TCACAGAAACACAAAACAGTCATGGTAGAATTTGCTTCACCTGTTTTCACCT 2113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79722882785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5