BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56920.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950363 jgi|Araly1|950363|scaffold_802250.1 972 0.0
Ahg917385 jgi|Araly1|917385|Al_scaffold_0008_2136 241 9e-63
> Ahg950363 jgi|Araly1|950363|scaffold_802250.1
Length=743
Score = 972 bits (526), Expect = 0.0
Identities = 673/743 (91%), Gaps = 13/743 (2%)
Strand=Plus/Plus
Query 88 AGGGTTCCGATCTAATCATGGCGGACTCTCTTTTGATGGAGGTTAACTATCGCCGGCCTG 147
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 5 AGGGTTCCGATCTAATCATGGCGGACTCTGTTTTGATGGAGGTTAACTGTCGCCGGCCTC 64
Query 148 AAAAGATTCCGAAGTTGGACGAAGATTGTGAAGGATCGGAATCTTCGTCGAAACAGCGCG 207
|||||||||||||||||||| ||||||| ||||||| |||| || || ||||||||||
Sbjct 65 AAAAGATTCCGAAGTTGGACAAAGATTGCCAAGGATCCAAATCGTCCTCCAAACAGCGCG 124
Query 208 TGGTCAAGTGGGGAACAGCGGAAGATGATGAATACTTGCGACAGTATTTGTTGTTTCACT 267
||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 125 TGGTCAAGTGGGGAAAAGGGGAAGATGACGAATACTTACGACAGTATTTGTTGTTTCACT 184
Query 268 ATCAATTCCAGAAAACTCAGGGTTTCTCGATTAAATGGGAGCAATTTGATTA-CAATTTT 326
||||||| |||||||||||||||||||||| |||||||||||||||||||| | | ||
Sbjct 185 ATCAATTTGAGAAAACTCAGGGTTTCTCGATAAAATGGGAGCAATTTGATTACCTA-TTC 243
Query 327 CGTAGTAGATCAATGGATAAGTCTCCAAATGAAATCAGCGAGAGAAAAAGCAATGCCGTA 386
||||||||| |||||||||| || || | |||||||||||| | |||||||||| | |
Sbjct 244 CGTAGTAGACCAATGGATAATTCGACAGACCAAATCAGCGAGACACAAAGCAATGCTGAA 303
Query 387 TTGATCCGTGAGATGACACTCACTGCTATCGACAAACACAACGAAGCTCATGGAACCAAA 446
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 304 TTGATCCGTGAGATGACACTCACTGCTATCGAGAAACACAACGAAGCTCATGGAACAAAA 363
Query 447 CTTGTGTTTGTGGAGCATGTTGAGGCAAATTACCAATTGACCAGAGGTCTTACCTGCTGG 506
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 364 CTTGTGTTTGTGGAGCATGTTGAAGCAAATTACCAATTTACCAGCGGTCTTACCTGCTGG 423
Query 507 TTAACATTTTGGGCTACAGATATGGCCTCTTCCCCTCCACAGTCTAAAATCTATCAAGCA 566
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 424 TTAACATTCTGGGCTACAGATATGGCCTCGTCCCCTCCAGAGTCTAAAATCTATCAAGCA 483
Query 567 CATGTGTGGCGTCGCGGACAAAAC--TTTCACACTTTTATATTCAGGCTCAAGCCCACAG 624
|||||||||||||||| || || ||||| ||||||||||||||| |||||||||| |
Sbjct 484 AATGTGTGGCGTCGCGG--AACACGGTTTCATACTTTTATATTCAGGGTCAAGCCCACGG 541
Query 625 ATGAAGAGATTGAAGCTGTTGAAGTGCAGCCACCGTCTCCCATGCTTTATGAATTAGATA 684
| |||||||||||| ||||||||||||| || ||||||||||||| ||||||||| ||||
Sbjct 542 ACGAAGAGATTGAATCTGTTGAAGTGCAACCTCCGTCTCCCATGCGTTATGAATTTGATA 601
Query 685 AACCACCGATTGTCTTTTCTCGACCTGGTCCTGAAGATGAAGCATTGCCTGGTGTCCCCT 744
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 602 AACCACCGATTGTCTTTTCTCGACCTGGTCCTGAAGATGAAGCATTGCCTGGAGTCCCCT 661
Query 745 TTGTCTTCAATCGAACTGGAGCTGGTCTTGACCCCGATTGGT--A----GAGTATGCTCT 798
||||||||||||||||||||||||||||||| |||||| ||| | ||| || |||
Sbjct 662 TTGTCTTCAATCGAACTGGAGCTGGTCTTGATCCCGATAGGTTCACTCCGAGC-TGGTCT 720
Query 799 TGATCCCGATAGGATAATGTATG 821
||||||| |||||| ||||||||
Sbjct 721 TGATCCCAATAGGAAAATGTATG 743
> Ahg917385 jgi|Araly1|917385|Al_scaffold_0008_2136
Length=264
Score = 241 bits (130), Expect = 9e-63
Identities = 167/185 (90%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 105 ATGGCGGACTCTCTTTTGATGGAGGTTAACTATCGCCGGCCTGAAAAGATTCCGAAGTTG 164
|||| ||||||| |||||| |||||||||| || ||||||| |||||||||| ||||||
Sbjct 1 ATGGAGGACTCTGGTTTGATAGAGGTTAACTGTCACCGGCCTCAAAAGATTCCAAAGTTG 60
Query 165 GACGAAGATTGTGAAGGATCGGAATCTTCGTCGAAACAGCGCGTGGTCAAGTGGGGAACA 224
||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||| |
Sbjct 61 GACGAAGATTGCGAAGGATCGAAATCTTCCTCGAAACAGCGCGTGATCAAGTGGGGAA-A 119
Query 225 -GCGGAAGATGATGAATACTTGCGACAGTATTTGTTGTTTCACTATCAATTCCAGAAAAC 283
| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 120 GGGGGAAGATGACGAATACTTACGACAGTATTTGTTGTTTCACTATCAATTCGAGAAAAC 179
Query 284 TCAGG 288
|||||
Sbjct 180 TCAGG 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5