BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56930.1
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950365 jgi|Araly1|950365|scaffold_802252.1 1733 0.0
Ahg887599 jgi|Araly1|887599|Al_scaffold_0052_1 1114 0.0
> Ahg950365 jgi|Araly1|950365|scaffold_802252.1
Length=2041
Score = 1733 bits (938), Expect = 0.0
Identities = 1088/1159 (94%), Gaps = 15/1159 (1%)
Strand=Plus/Plus
Query 899 AGATGGATCCTGGAACCTCCATCaaaaaaaGGTCTGCGCCTTCTAAGGATGCAAAAGCCA 958
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 889 AGATGGATCCTGGAACCTCCATTAAAAAAAGGTCTGCGCCTTCTAAGGACGCAAAAGCCA 948
Query 959 GAAAGAGGGCAAAAGCTAGGATA-AAAAGAGCTCAAGAGCGTATAGCCCTTGGCGTGAAA 1017
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 949 GAAAGAGGGCAAAAGCTAGGA-AGAAAAGAGCTAAAGAGCGTATAGCCCTTGGCGTGAAA 1007
Query 1018 AAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGCCTATCAAGTATTGTCGACACTAT 1077
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 AAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGCCTATAAAGTATTGTCGACACTAT 1067
Query 1078 CTCAAGGGGCGGTGCCATGAGGGAGATAAATGCAAATTTTCACATGATACAA-TACCGGA 1136
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1068 CTCAAGGGACGGTGCCATGAGGGAGATAAATGCAAATTTTCACATGATACAACT-CCGGA 1126
Query 1137 AACCAAATGTTCGCCTTGCTGCTACTTTGCAACCCAGTCATGTATGAAAGGAGATGATTG 1196
|||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1127 AACCAAATCTTCGGCTTGCTGCTACTTTGCAACCCAATCATGTATGAAAGGAGATGATTG 1186
Query 1197 TCCTTTCGACCATGATCTCTCCAAATACCCTTGCAATAATTTCATTACTAAAGGTTTCTG 1256
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1187 TCCTTTCGACCATGATCTCTCCAAATACCCCTGCAATAATTTCATTACTAAAGGTTTCTG 1246
Query 1257 CTACAGGGGTGATAGTTGTTTGTTTTCGCATAAGGGTACTCCACAATCTGCTTCAGACAC 1316
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1247 CCACAGGGGTGATAGTTGTTTGTTTTCGCACAAGGGTACTCCACAATCTGCTTCAGACAC 1306
Query 1317 GCCGAGTGCAAATGTAACAGTCTCGTCTACTAAGATCACTGCAGCGTCTTTCTCGCCTCA 1376
|||||||||||||||||||| ||| || ||||| |||||||||||||| ||||| |||||
Sbjct 1307 GCCGAGTGCAAATGTAACAGCCTCATCAACTAACATCACTGCAGCGTCGTTCTCTCCTCA 1366
Query 1377 GAAAACaaaaaaaCAATCCGTGAGAGATGCCATAGCCAAATTACCGGCGA-TCCAAGCAA 1435
||||||||| ||||||||||||||||| || |||||||||||||||| || |||||||||
Sbjct 1367 GAAAACAAACAAACAATCCGTGAGAGAGGCAATAGCCAAATTACCGG-GAATCCAAGCAA 1425
Query 1436 GAGTTTCAAGCTCTGTTGCGTTTTTGAAGCCCTCAAGTCATTCTAACCA-ACGAAACTCA 1494
|||||||||||||||||| |||||||||||||| ||||| |||||||| | ||||| ||
Sbjct 1426 GAGTTTCAAGCTCTGTTGGGTTTTTGAAGCCCTTGAGTCAATCTAACCATA-GAAACCCA 1484
Query 1495 TCTGATGCATCATCTTCAAAGATCAATGAACATGTAACGCCTCCACAGGTTCCTCCTTTG 1554
|||||||||| |||| ||||||||||||||| |||||||| ||| ||||||| |||||||
Sbjct 1485 TCTGATGCATTATCTCCAAAGATCAATGAACCTGTAACGCATCCCCAGGTTCTTCCTTTG 1544
Query 1555 AGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTAGACAAAACCT-CACA 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1545 AGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTAGACAAAACCTTC-CA 1603
Query 1614 AGAGGATACGGTGAAAGCGTCTTCTGCGTCCAAGCCAAACACAGACAACTCTGATAGTCA 1673
||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1604 AGAGGATACGGTGAAAGTGTCTCCTGCGTCCAAGCGAAACACAGACAACTCTGATAATCA 1663
Query 1674 GACATTGAAGCAGTCACAACAGGGAAGCTTTCTCCCTCTGGGGCCTCCAAAAGGAATAAG 1733
|||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||| ||
Sbjct 1664 GACATTGAAGCAGTCACAACTGGGAAGCTCTCTTCCTCTGGTGCCTCCAAAAGGAATCAG 1723
Query 1734 TTTCTTATCATTTGCATCAGAAGAACAAAAAACTCTGAATCGAGAGCCTCAAAAACCAGC 1793
||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |
Sbjct 1724 TTTCTTATCATTTGCATCAGAGGAACCAAAAACTCTGAATCGAGAGCCTCAAGAACCATC 1783
Query 1794 AAGTAGTAAAAATCTCAAGACTACGCCTAGCTCACACATTCAAAGTTCTCTACTCTCAGC 1853
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1784 AAGTAGTAGAAATCTCAAGACAACTCCTAGCTCACACATTCAAAGTTCTCTACTCTCAGC 1843
Query 1854 CATGAAACTCGCTGCAGAATTCGAATCCGCTAAAGTTGAACGA-GGCAACAATGATCCAA 1912
|||||||| |||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1844 AATGAAACTAGCTGCAGAATTCGAATCCGCTAAAGTTGAAAGACGG-AACAATGATCCAA 1902
Query 1913 CAGAAGCTGTAAATAAGAGCAATGTTACT---GTTGACACGGCTGTAACCAGAAACTCAG 1969
||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||
Sbjct 1903 CAGAAGCTGTAAATAAGAGCAATGTTACTACTGTTAACACGACAGTAACCAGAAACTCAG 1962
Query 1970 GGAACATATCTTCCAAGATTCTCGAGTTCTTGTCGAGCTTCAGCCACGGCAAAAACTGAT 2029
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1963 GGAACATATCTTCCAAGATTCTCGAGTTCTTGTCGAGCTTTAGCCAAGGCAAAAACTGAT 2022
Query 2030 CTTAATTTGGTTTTTGAGA 2048
||| |||||||||||||||
Sbjct 2023 CTTTATTTGGTTTTTGAGA 2041
Score = 542 bits (293), Expect = 5e-153
Identities = 408/460 (89%), Gaps = 22/460 (5%)
Strand=Plus/Plus
Query 1 ATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCTGC-CGAATCGAAATTA 59
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||
Sbjct 21 ATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCT-CTCGAATCGGACTTA 79
Query 60 TCGCTCTTTGCTTTATCACTTTTGCTCGAGTTTCGATCGGGAGCCTCAAATTTCTCTTGC 119
||| ||||||||| ||||| | ||||||||||||||||||||||||| | |||| |||||
Sbjct 80 TCGTTCTTTGCTTCATCACCTCTGCTCGAGTTTCGATCGGGAGCCTCGAGTTTCGCTTGC 139
Query 120 CACACCGGCAGTTCTCCAGGAGCTGGTCTTACGAACAGAAATTGCTCAAGAGTCTCCGGG 179
|||||||| ||||| || |||||||||||| ||||||||||||||| || |||||||||
Sbjct 140 TACACCGGCCGTTCTTCACGAGCTGGTCTTAAGAACAGAAATTGCTCCAGTGTCTCCGGG 199
Query 180 AGAAACTTGCGAACCGCCGGAGAATTTATCAAT--TACGGAATCAAAACTC-AATGGAGT 236
|||||||||| |||| ||||||||| ||||||| || | |||||||| || ||||||||
Sbjct 200 AGAAACTTGCAAACCACCGGAGAATCTATCAATGGTA-G-AATCAAAA-TCCAATGGAGT 256
Query 237 GTCTGGTGATTCAAGTGGTGAGAAGGTGGAAACAATTTCACAGGAAAAGAGTTTGATGCT 296
||||| ||||| ||| |||||||| | | | ||||||||||||||||||||
Sbjct 257 GTCTGTTGATTTAAGAGGTGAGAA--T--------T--CGCAGGAAAAGAGTTTGATGCT 304
Query 297 TGGAGATATTTGTGATGGAATTGACTTGCAAGATGCATCTGTTGTTAGTAGACACACAGA 356
||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 305 TGGAGATGTTTTTGATGGAATTGACTTGCAAGATGCATCTGTTGGTATTAGACACACAGA 364
Query 357 TTTTTTCGATAGCTTTGAGCTTATGATTAATGAAACTCAAGA-TTCTGTTCCAGAAAGTT 415
||||||||||||||||||||||||||| ||||||| || ||| || ||||||||||||||
Sbjct 365 TTTTTTCGATAGCTTTGAGCTTATGATAAATGAAAATCCAGACTT-TGTTCCAGAAAGTT 423
Query 416 GTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGA 455
||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGA 463
Score = 460 bits (249), Expect = 1e-128
Identities = 295/318 (93%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 516 TGAAAGTGAGAAAAAGGCAGAGGAGGTTCCTAAATCTGTTGAATCTAATGAGGTTATAAG 575
||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct 554 TGAAAGTGATAAAAAGGTAGAGGAGGTTCCTAAATCTGCTGAATCTAATGAAGTTAAAAG 613
Query 576 TTCTGGAGTTTTGGAAGCTTGTAATGGAACAGTTCAAAGAGAGATGGAATTAGAGAAACC 635
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct 614 TTCTGGATTTTTGGAAGCTTGTGATGAAACAGTTCAAAGAGAGATGGAATTGGAGAAACC 673
Query 636 TGTTGATAATAGTCCGGTTTTGGTAGATTCTGTGTCTCGGATAGTTGGAGGTGATGATGT 695
|||||||| || |||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 674 TGTTGATAGTACTCCGGTTTTGGTAGATTCCGTGTCTCGGATAGTTGAAGATGATGATGT 733
Query 696 AGAAGAAGGAGAGATATCAGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAAAC 755
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 734 AGAAGAAGGAGAGATATCTGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAACC 793
Query 756 AGTCGAAAGACATGAGGAGTATCAGGTCTCACAAGATGGAACTGGTAATAGCCATCTCAC 815
|||||||||||||||||||| ||||||||||| |||||| | |||||| |||||||||||
Sbjct 794 AGTCGAAAGACATGAGGAGTGTCAGGTCTCACGAGATGGGATTGGTAACAGCCATCTCAC 853
Query 816 TAGTCATAAGAGTTTTGG 833
|||||| ||||||||||
Sbjct 854 AAGTCATGAGAGTTTTGG 871
> Ahg887599 jgi|Araly1|887599|Al_scaffold_0052_1
Length=1884
Score = 1114 bits (603), Expect = 0.0
Identities = 727/786 (92%), Gaps = 11/786 (1%)
Strand=Plus/Plus
Query 1250 GTTTCTGCTACAGGGGTGATAGTTGTTTGTTTTCGCATAAGGGTACTCCACAATCTGCTT 1309
|||||||| |||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 1103 GTTTCTGCCACAGGGGTGATATTTGTTTGTTTTCACACAAGGGTACTCCACAATCTGCTT 1162
Query 1310 CAGACACGCCGAGTGCAAATGTAACAGTCTCGTCTACTAAGATCACTGCAGCGTCTTTCT 1369
||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| ||||
Sbjct 1163 CAGACACGCCGAGTGCAAATGTAACAGCCTCATCAACTAACATCACTGCAGCGTCGTTCT 1222
Query 1370 CGCCTCAGAAAACaaaaaaaCAATCCGTGAGAGATGCCATAGCCAAATTACCGGCG-ATC 1428
| |||||||||||||| ||||||||||||||||| || |||||||||||||||| | |||
Sbjct 1223 CTCCTCAGAAAACAAACAAACAATCCGTGAGAGAGGCAATAGCCAAATTACCGG-GAATC 1281
Query 1429 CAAGCAAGAGTTTCAAGCTCTGTTGCGTTTTTGAAGCCCTCAAGTCATTCTAACCA-ACG 1487
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| | |
Sbjct 1282 CAAGCAAGAGTTTCAAGCTCTGTTGGGTTTTTGAAGCCCTTGAGTCAATCTAACCATA-G 1340
Query 1488 AAACTCATCTGATGCATCATCTTCAAAGATCAATGAACATGTAACGCCTCCACAGGTTCC 1547
|||| |||||||||||| |||| ||||||||||||||| |||||||| ||| |||||||
Sbjct 1341 AAACCCATCTGATGCATTATCTCCAAAGATCAATGAACCTGTAACGCATCCCCAGGTTCT 1400
Query 1548 TCCTTTGAGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTAGACAAAAC 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TCCTTTGAGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTAGACAAAAC 1460
Query 1608 C-TCACAAGAGGATACGGTGAAAGCGTCTTCTGCGTCCAAGCCAAACACAGACAACTCTG 1666
| || ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct 1461 CTTC-CAAGAGGATACGGTGAAAGTGTCTCCTGCGTCCAAGCGAAACACAGACAACTCTG 1519
Query 1667 ATAGTCAGACATTGAAGCAGTCACAACAGGGAAGCTTTCTCCCTCTGGGGCCTCCAAAAG 1726
||| ||||||||||||||||||||||| |||||||| ||| ||||||| |||||||||||
Sbjct 1520 ATAATCAGACATTGAAGCAGTCACAACTGGGAAGCTCTCTTCCTCTGGTGCCTCCAAAAG 1579
Query 1727 GAATAAGTTTCTTATCATTTGCATCAGAAGAACAAAAAACTCTGAATCGAGAGCCTCAAA 1786
|||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1580 GAATCAGTTTCTTATCATTTGCATCAGAGGAACCAAAAACTCTGAATCGAGAGCCTCAAG 1639
Query 1787 AACCAGCAAGTAGTAAAAATCTCAAGACTACGCCTAGCTCACACATTCAAAGTTCTCTAC 1846
||||| ||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1640 AACCATCAAGTAGTAGAAATCTCAAGACAACTCCTAGCTCACACATTCAAAGTTCTCTAC 1699
Query 1847 TCTCAGCCATGAAACTCGCTGCAGAATTCGAATCCGCTAAAGTTGAACGA-GGCAACAAT 1905
||||||| |||||||| |||||||||||||||||||||||||||||| || || ||||||
Sbjct 1700 TCTCAGCAATGAAACTAGCTGCAGAATTCGAATCCGCTAAAGTTGAAAGACGG-AACAAT 1758
Query 1906 GATCCAACAGAAGCTGTAAATAAGAGCAATG-T--TACTGTTGACACGGCTGTAACCAGA 1962
||||||||||||||||||||||||||||||| | ||||||| ||||| | |||||||||
Sbjct 1759 GATCCAACAGAAGCTGTAAATAAGAGCAATGTTACTACTGTTAACACGACAGTAACCAGA 1818
Query 1963 AACTCAGGGAACATATCTTCCAAGATTCTCGAGTTCTTGTCGAGCTTCAGCCACGGCAAA 2022
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1819 AACTCAGGGAACATATCTTCCAAGATTCTCGAGTTCTTGTCGAGCTTTAGCCAAGGCAAA 1878
Query 2023 AACTGA 2028
||||||
Sbjct 1879 AACTGA 1884
Score = 713 bits (386), Expect = 0.0
Identities = 521/584 (89%), Gaps = 17/584 (3%)
Strand=Plus/Plus
Query 516 TGAAAGTGAGAAAAAGGCAGAGGAGGTTCCTAAATCTGTTGAATCTAATGAGGTTATAAG 575
||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct 534 TGAAAGTGATAAAAAGGTAGAGGAGGTTCCTAAATCTGCTGAATCTAATGAAGTTAAAAG 593
Query 576 TTCTGGAGTTTTGGAAGCTTGTAATGGAACAGTTCAAAGAGAGATGGAATTAGAGAAACC 635
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct 594 TTCTGGATTTTTGGAAGCTTGTGATGAAACAGTTCAAAGAGAGATGGAATTGGAGAAACC 653
Query 636 TGTTGATAATAGTCCGGTTTTGGTAGATTCTGTGTCTCGGATAGTTGGAGGTGATGATGT 695
|||||||| || |||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 654 TGTTGATAGTACTCCGGTTTTGGTAGATTCCGTGTCTCGGATAGTTGAAGATGATGATGT 713
Query 696 AGAAGAAGGAGAGATATCAGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAAAC 755
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 714 AGAAGAAGGAGAGATATCTGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAACC 773
Query 756 AGTCGAAAGACATGAGGAGTATCAGGTCTCACAAGATGGAACTGGTAATAGCCATCTCAC 815
|||||||||||||||||||| ||||||||||| |||||| | |||||| |||||||||||
Sbjct 774 AGTCGAAAGACATGAGGAGTGTCAGGTCTCACGAGATGGGATTGGTAACAGCCATCTCAC 833
Query 816 TAGTCATAAGAGTTTTGGTGTTGAGGTAATGAATGTAGATAATCAAGCCAAGAAGATTGA 875
|||||| |||||||||| ||| | || ||| || |||| | | | | ||
Sbjct 834 AAGTCATGAGAGTTTTGGAAAAGAGCT--TGG-TGTTGAGAATCT-GACTTGTAT-TT-- 886
Query 876 TCAAACTTTCAGTAACGAAGCAAAGATGGATCCTGGAACCTCCATCaaaaaaaGGTCTGC 935
| || ||| | || | ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 887 T-AA-CTT-CT-TATCT--GCA--GATGGATCCTGGAACCTCCATTAAAAAAAGGTCTGC 938
Query 936 GCCTTCTAAGGATGCAAAAGCCAGAAAGAGGGCAAAAGCTAGGATA-AAAAGAGCTCAAG 994
|||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 939 GCCTTCTAAGGACGCAAAAGCCAGAAAGAGGGCAAAAGCTAGGA-AGAAAAGAGCTAAAG 997
Query 995 AGCGTATAGCCCTTGGCGTGAAAAAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 AGCGTATAGCCCTTGGCGTGAAAAAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGC 1057
Query 1055 CTATCAAGTATTGTCGACACTATCTCAAGGGGCGGTGCCATGAG 1098
|||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1058 CTATAAAGTATTGTCGACACTATCTCAAGGAACGGTGCCATGAG 1101
Score = 542 bits (293), Expect = 5e-153
Identities = 408/460 (89%), Gaps = 22/460 (5%)
Strand=Plus/Plus
Query 1 ATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCTGC-CGAATCGAAATTA 59
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||
Sbjct 1 ATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCT-CTCGAATCGGACTTA 59
Query 60 TCGCTCTTTGCTTTATCACTTTTGCTCGAGTTTCGATCGGGAGCCTCAAATTTCTCTTGC 119
||| ||||||||| ||||| | ||||||||||||||||||||||||| | |||| |||||
Sbjct 60 TCGTTCTTTGCTTCATCACCTCTGCTCGAGTTTCGATCGGGAGCCTCGAGTTTCGCTTGC 119
Query 120 CACACCGGCAGTTCTCCAGGAGCTGGTCTTACGAACAGAAATTGCTCAAGAGTCTCCGGG 179
|||||||| ||||| || |||||||||||| ||||||||||||||| || |||||||||
Sbjct 120 TACACCGGCCGTTCTTCACGAGCTGGTCTTAAGAACAGAAATTGCTCCAGTGTCTCCGGG 179
Query 180 AGAAACTTGCGAACCGCCGGAGAATTTATCAAT--TACGGAATCAAAACTC-AATGGAGT 236
|||||||||| |||| ||||||||| ||||||| || | |||||||| || ||||||||
Sbjct 180 AGAAACTTGCAAACCACCGGAGAATCTATCAATGGTA-G-AATCAAAA-TCCAATGGAGT 236
Query 237 GTCTGGTGATTCAAGTGGTGAGAAGGTGGAAACAATTTCACAGGAAAAGAGTTTGATGCT 296
||||| ||||| ||| |||||||| | | | ||||||||||||||||||||
Sbjct 237 GTCTGTTGATTTAAGAGGTGAGAA--T--------T--CGCAGGAAAAGAGTTTGATGCT 284
Query 297 TGGAGATATTTGTGATGGAATTGACTTGCAAGATGCATCTGTTGTTAGTAGACACACAGA 356
||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 285 TGGAGATGTTTTTGATGGAATTGACTTGCAAGATGCATCTGTTGGTATTAGACACACAGA 344
Query 357 TTTTTTCGATAGCTTTGAGCTTATGATTAATGAAACTCAAGA-TTCTGTTCCAGAAAGTT 415
||||||||||||||||||||||||||| ||||||| || ||| || ||||||||||||||
Sbjct 345 TTTTTTCGATAGCTTTGAGCTTATGATAAATGAAAATCCAGACTT-TGTTCCAGAAAGTT 403
Query 416 GTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGA 455
||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGA 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78427814455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5