BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56940.1
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952276 jgi|Araly1|952276|scaffold_5200003.1 736 0.0
Ahg950366 jgi|Araly1|950366|scaffold_802253.1 730 0.0
> Ahg952276 jgi|Araly1|952276|scaffold_5200003.1
Length=448
Score = 736 bits (398), Expect = 0.0
Identities = 426/440 (97%), Gaps = 0/440 (0%)
Strand=Plus/Plus
Query 79 AAAGGGAGGAGAAACATGGTTGTACGTATCAGACTGTCGAGATTTGGATGCAAAAATCGG 138
||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||
Sbjct 6 AAAGGGAGGAGAAACATGGTTGTGCGGATCAGATTATCGAGATTTGGATGCAAAAATCGG 65
Query 139 CCATTTTTTAGGGTTATGGCTGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAG 198
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 66 CCATTTTTTAGGGTTATGGCCGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAG 125
Query 199 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 185
Query 259 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGT 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGC 245
Query 319 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 305
Query 379 GGAGCACGAGACACACGCCCAGTTGATCCGATGACTGGTCGCTATGTGGATGCAGAGAAT 438
|||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||
Sbjct 306 GGAGCACGAGACACACGCCCTGTTGATCCAATGACTGGTCGCTACGTAGATGCAGAGAAT 365
Query 439 AAAACAGTTAATGCCAATGATAACCAGCCTAAGGAAGAGGATACAGAAGCCAAGAGTGCA 498
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 366 AAAACAGTTAATGCCAGTGATAACCAGCCTAAGGAAGAGGATACAGAAGACAAGAGTGCA 425
Query 499 TGATTCATTAGCCTTCTGTC 518
| ||||||||||||| ||||
Sbjct 426 TAATTCATTAGCCTTTTGTC 445
> Ahg950366 jgi|Araly1|950366|scaffold_802253.1
Length=448
Score = 730 bits (395), Expect = 0.0
Identities = 425/440 (97%), Gaps = 0/440 (0%)
Strand=Plus/Plus
Query 79 AAAGGGAGGAGAAACATGGTTGTACGTATCAGACTGTCGAGATTTGGATGCAAAAATCGG 138
||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||
Sbjct 6 AAAGGGAGGAGAAACATGGTTGTGCGGATCAGATTATCGAGATTTGGATGCAAAAATCGG 65
Query 139 CCATTTTTTAGGGTTATGGCTGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAG 198
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 66 CCATTTTTTAGGGTTATGGCCGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTCGAG 125
Query 199 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 185
Query 259 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGT 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGC 245
Query 319 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 305
Query 379 GGAGCACGAGACACACGCCCAGTTGATCCGATGACTGGTCGCTATGTGGATGCAGAGAAT 438
|||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||
Sbjct 306 GGAGCACGAGACACACGCCCTGTTGATCCAATGACTGGTCGCTACGTAGATGCAGAGAAT 365
Query 439 AAAACAGTTAATGCCAATGATAACCAGCCTAAGGAAGAGGATACAGAAGCCAAGAGTGCA 498
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 366 AAAACAGTTAATGCCAGTGATAACCAGCCTAAGGAAGAGGATACAGAAGACAAGAGTGCA 425
Query 499 TGATTCATTAGCCTTCTGTC 518
| ||||||||||||| ||||
Sbjct 426 TAATTCATTAGCCTTTTGTC 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26190443979
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5