BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56940.1 Length=712 Score E Sequences producing significant alignments: (Bits) Value Ahg952276 jgi|Araly1|952276|scaffold_5200003.1 736 0.0 Ahg950366 jgi|Araly1|950366|scaffold_802253.1 730 0.0 > Ahg952276 jgi|Araly1|952276|scaffold_5200003.1 Length=448 Score = 736 bits (398), Expect = 0.0 Identities = 426/440 (97%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 79 AAAGGGAGGAGAAACATGGTTGTACGTATCAGACTGTCGAGATTTGGATGCAAAAATCGG 138 ||||||||||||||||||||||| || |||||| | |||||||||||||||||||||||| Sbjct 6 AAAGGGAGGAGAAACATGGTTGTGCGGATCAGATTATCGAGATTTGGATGCAAAAATCGG 65 Query 139 CCATTTTTTAGGGTTATGGCTGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAG 198 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 66 CCATTTTTTAGGGTTATGGCCGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAG 125 Query 199 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 185 Query 259 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGT 318 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGC 245 Query 319 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 305 Query 379 GGAGCACGAGACACACGCCCAGTTGATCCGATGACTGGTCGCTATGTGGATGCAGAGAAT 438 |||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||| Sbjct 306 GGAGCACGAGACACACGCCCTGTTGATCCAATGACTGGTCGCTACGTAGATGCAGAGAAT 365 Query 439 AAAACAGTTAATGCCAATGATAACCAGCCTAAGGAAGAGGATACAGAAGCCAAGAGTGCA 498 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 366 AAAACAGTTAATGCCAGTGATAACCAGCCTAAGGAAGAGGATACAGAAGACAAGAGTGCA 425 Query 499 TGATTCATTAGCCTTCTGTC 518 | ||||||||||||| |||| Sbjct 426 TAATTCATTAGCCTTTTGTC 445 > Ahg950366 jgi|Araly1|950366|scaffold_802253.1 Length=448 Score = 730 bits (395), Expect = 0.0 Identities = 425/440 (97%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 79 AAAGGGAGGAGAAACATGGTTGTACGTATCAGACTGTCGAGATTTGGATGCAAAAATCGG 138 ||||||||||||||||||||||| || |||||| | |||||||||||||||||||||||| Sbjct 6 AAAGGGAGGAGAAACATGGTTGTGCGGATCAGATTATCGAGATTTGGATGCAAAAATCGG 65 Query 139 CCATTTTTTAGGGTTATGGCTGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAG 198 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 66 CCATTTTTTAGGGTTATGGCCGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTCGAG 125 Query 199 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 185 Query 259 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGT 318 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGC 245 Query 319 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 305 Query 379 GGAGCACGAGACACACGCCCAGTTGATCCGATGACTGGTCGCTATGTGGATGCAGAGAAT 438 |||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||| Sbjct 306 GGAGCACGAGACACACGCCCTGTTGATCCAATGACTGGTCGCTACGTAGATGCAGAGAAT 365 Query 439 AAAACAGTTAATGCCAATGATAACCAGCCTAAGGAAGAGGATACAGAAGCCAAGAGTGCA 498 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 366 AAAACAGTTAATGCCAGTGATAACCAGCCTAAGGAAGAGGATACAGAAGACAAGAGTGCA 425 Query 499 TGATTCATTAGCCTTCTGTC 518 | ||||||||||||| |||| Sbjct 426 TAATTCATTAGCCTTTTGTC 445 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26190443979 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5