BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56950.1
Length=1656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357912 jgi|Araly1|357912|fgenesh1_pg.C_scaffold_8001699 1895 0.0
Ahg492203 jgi|Araly1|492203|fgenesh2_kg.7__1636__AT4G26110.1 1181 0.0
Ahg887601 jgi|Araly1|887601|Al_scaffold_0052_3 802 0.0
> Ahg357912 jgi|Araly1|357912|fgenesh1_pg.C_scaffold_8001699
Length=1128
Score = 1895 bits (1026), Expect = 0.0
Identities = 1094/1127 (97%), Gaps = 3/1127 (0%)
Strand=Plus/Plus
Query 170 ATGAGCAACGATAAGGACAGTTTCAATGTCAGCGATCTCACTTCTGCTCTTAAAGATGAG 229
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAGCAACGATAAGGACAATTTCAATGTCAGCGATCTCACTGCTGCTCTTAAAGATGAG 60
Query 230 GATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGCTCCAGAATCTAGCTGGACAACAT 289
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 61 GATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGTTGCAGAATCTAGCTGGACAACAT 120
Query 290 TCTGATGTGCTCGAGAATCTGACTCCTAAAATTAGAAGGCGTGTTGAGGTTTTGCGGGAG 349
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 121 TCCGATGTGCTCGAGAATCTGACTCCTAAAATCAGAAGACGTGTTGAGGTTTTACGCGAG 180
Query 350 ATTCAGGGCAAACATGATGAAATAGAGACAAAATTCCGCGAGGAGAGAGCTGCTCTTGAA 409
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 ATTCAGGGCAAACATGATGAAATAGAGACGAAATTCCGCGAGGAGAGAGCTGCTCTTGAA 240
Query 410 GCCAAGTATCAAAAGTTATATCAGCCTTTGTATAACAAGCGTTATGAGATTGTGAATGGA 469
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 GCCAAGTATCAAAAGTTATATCAGCCTTTGTATACCAAGCGTTATGAGATTGTGAATGGA 300
Query 470 GCTACTGAAGTTGAAGGGGCTCCAGAGGATGCTAAGATGGACCAAGGAGACGAGAAAACT 529
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 301 GCTACTGAAGTTGAAGGGGCTCCAGATGATGCTAAGATGGACCATGGAGATGAGAAAACT 360
Query 530 GCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACTGCTCTGAAAAATAATGATGTTATA 589
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 361 GCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACCGCTCTGAAAAACAATGATGTTATT 420
Query 590 TCTGAAGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGG 649
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTGAGGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGG 480
Query 650 TGCAAGATTGAAGAACCAAAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTAC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGCAAGATTGAAGAACCAAAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTAC 540
Query 710 TTCAAAAACACCCTATTAACAAAGGCGTATCATATGATTGATGAAGATGAGCCTCTGCTT 769
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TTCAAAAACACCCTATTAACAAAGGCATATCATATGATTGATGAAGATGAGCCTCTGCTT 600
Query 770 GAGAAGGCTATTGGGACAGAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATT 829
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGAAGGCTATTGGGACGGAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATT 660
Query 830 CTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGAT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGAT 720
Query 890 TGTGAAAGCTTCTTCAACTTCTTCAATCCTCCCCAAGTTCCTGATGATGATGAAGACATT 949
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 TGTGAAAGCTTTTTCAACTTCTTCAATCCTCCCCAAGTTCCCGATGATGATGAAGACATT 780
Query 950 GACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATGACATTGGTTCT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATGACATTGGTTCT 840
Query 1010 ACAATCCGGGAGAAGATCATACCTCATGCTGTCTCATGGTTTACTGGTGAGGCTATTGAG 1069
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACAATCCGGGAGAAGATTATACCTCATGCTGTCTCATGGTTTACTGGTGAGGCTATTGAG 900
Query 1070 GGAGAGGAGTTTGAAATAGACAatgacgatgaagatgatatcgatgaggatgaagatgag 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGAGAGGAGTTTGAAATAGACAATGACGATGAAGATGATATCGATGAGGATGAAGATGAG 960
Query 1130 gatgaagaagatgaagacgaagatgaggaagaagacgacga--a-gatgaggaggaagaa 1186
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 961 GATGAAGAAGATGAAGACGAAGATGAGGAAGAAGACGATGATGAAGATGAGGAGGAAGAA 1020
Query 1187 gtaagcaagacCAAAAAGAAGCCATCAGTCTTACACAAGAAAGGAGGGAGACCTCAGGTT 1246
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1021 GTAAGCAAGACCAAAAAGAAGCCGTCAGTCTTACACAAGAAAGGAGGGAGACCTCAGCTT 1080
Query 1247 ACCGATGATCAACAAGGAGAGAGGCCTCCTGAATGcaaacaacagta 1293
| ||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 1081 AACGATGGTCAGCAAGGAGAGAGGCCTCCTGAATGCAAGCAACAGTA 1127
> Ahg492203 jgi|Araly1|492203|fgenesh2_kg.7__1636__AT4G26110.1
Length=1311
Score = 1181 bits (639), Expect = 0.0
Identities = 977/1142 (86%), Gaps = 16/1142 (1%)
Strand=Plus/Plus
Query 164 CAGAAAATGAGCAACGATAAGGACAGTTTCAATGTCAGCGATCTCACTTCTGCTCTTAAA 223
||||| ||||||||||| ||||||| ||||| ||| |||||| ||| |||||||||||
Sbjct 85 CAGAAGATGAGCAACGACAAGGACAACTTCAACGTCTCCGATCTTACTGCTGCTCTTAAA 144
Query 224 GATGAG-GATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGCTCCAGAATCTAGCTGG 282
|||| | |||||||||| |||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 145 GATG-GCGATCGAGCTGACCTTGTCAATGCTCTAAAGAACAAGCTGCAGAATCTGGCTGG 203
Query 283 ACAACATTCTGATGTGCTCGAGAATCTGACTCCTAAAATTAGAAGGCGTGTTGAGGTTTT 342
|| | ||||||||||||||||||||||||||||| | |||| |||||| || | ||
Sbjct 204 TCAGCGTTCTGATGTGCTCGAGAATCTGACTCCTATTGTGAGAAAGCGTGTCGATGCCTT 263
Query 343 GCGGGAGATTCAGGGCAAACATGATGAAATAGAGACAAAATTCCGCGAGGAGAGAGCTG- 401
| |||| || ||| || ||||||||||| ||||| |||||||||| |||||| | || |
Sbjct 264 GAGGGATATACAGAGCCAACATGATGAACTAGAGGCAAAATTCCGTGAGGAGCGGGC-GA 322
Query 402 CTCTTGAAGCCAAGTATCAAAAGTTATATCAGCCTTTGTATAACAAGCGTTATGAGATTG 461
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 323 TTCTTGAAGCCAAGTATCAAAAGTTGTATCAGCCTTTGTATACCAAGCGTTATGAGATTG 382
Query 462 TGAATGGAGCTACTGAAGTTGAAGGGGCTCCAGAGGATGCTAAGATGGACCAAGGAGACG 521
|||||||| |||||||||||||| |||| |||||||| |||| |||||||||||| |
Sbjct 383 TGAATGGAACTACTGAAGTTGAACAGGCTGCAGAGGATATTAAGGCGGACCAAGGAGAGG 442
Query 522 AGAAAACTGCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACTGCTCTGAAAAATAATG 581
||||||||||||||||||||||||| || |||||||||||||| || |||||||| ||||
Sbjct 443 AGAAAACTGCAGAAGAGAAAGGAGTTCCAAGTTTCTGGCTGACAGCCCTGAAAAACAATG 502
Query 582 ATGTTATATCTGAAGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATA 641
||||||| || || ||| |||| |||||||||||||| || || | ||||||||||||||
Sbjct 503 ATGTTATTTCCGAGGAGGTCACGGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATA 562
Query 642 TCAAGTGGTGCAAGATTGAAGAACC-AAAGGGATTCAAACTTGAGTTTTTCTTCGAC-CA 699
| ||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||| ||
Sbjct 563 TTAAGTGGTGCAAGATTGAAGAACCTAAA-GGATTCAAACTTGAATTTTTCTTTGACACA 621
Query 700 GAATCCTTACTTCAAAAACACCCTATTAACAAAGGCGTATCATATGATTGATGAAGATGA 759
||||| || || || ||||| | || |||||| | ||||| |||||||||||||||||
Sbjct 622 -AATCCATATTTTAAGAACACTGTCTTGACAAAGTCTTATCACATGATTGATGAAGATGA 680
Query 760 GCCTCTGCTTGAGAAGGCTATTGGGACAGAGATTGATTGGTATCCTGGAAAATGCT-TAA 818
||| ||||||||||||||||| |||||||| |||||||||||||||||||| || | |||
Sbjct 681 GCCACTGCTTGAGAAGGCTATGGGGACAGAAATTGATTGGTATCCTGGAAAGTG-TCTAA 739
Query 819 CTCAGAAGATTCTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCA 878
||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct 740 CTCAGAAGATTCTTAAGAAGAAGCCTAAGAAAGGTTCAAAGAATGCTAAACCAATCACCA 799
Query 879 AAACTGAAGATTGTGAAAGCTTCTTCAACTTCTTCAATCCTCCCCAAGTTCCTGATGATG 938
|||| ||||| ||||||||||||||||||||||| | |||||| ||||||| ||||| |
Sbjct 800 AAACCGAAGACTGTGAAAGCTTCTTCAACTTCTTTAGTCCTCCAGAAGTTCCGGATGAAG 859
Query 939 ATGAAGACATTGACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATG 998
||||||| || ||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 860 ATGAAGATATCGACGAGGAAAGAGCTGAGGATCTTCAAAATCTGATGGAACAAGATTATG 919
Query 999 ACATTGGTTCTACAATCCGGGAGAAGATCATACCTCATGCTGTCTCATGGTTTACTGGTG 1058
||||||| ||||| || ||||| ||||| || || | ||||||||||||||| |||||||
Sbjct 920 ACATTGGATCTACTATTCGGGACAAGATTATTCCACGTGCTGTCTCATGGTTCACTGGTG 979
Query 1059 AGGCTATTGAGGGAGAGGAGTTTGAAATAGACAatgacgatgaagatgatatcgatgagg 1118
||||||| || | |||||| ||||||||||| || || |||||||| || |||||||
Sbjct 980 AGGCTATGGAAGCAGAGGATTTTGAAATAGATGGCGATGAGGAAGATGACATTGATGAGG 1039
Query 1119 atgaagatgaggatgaagaagatgaagacgaagatgaggaagaagacgacgaagatgagg 1178
|||| || |||||||| ||||| ||||| || || ||||| || || || || |||||||
Sbjct 1040 ATGATGAAGAGGATGAGGAAGACGAAGATGACGAGGAGGATGATGATGATGAGGATGAGG 1099
Query 1179 agga--a-gaagtaagcaagacCAAAAAGAAGCCATCAGTCTTACACAAGAAAGGAGGGA 1235
|||| | |||| ||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 1100 AGGATGAAGAAGAAAGCAAGACCAAAAAGAAGCCATCAATCAGAAACAAGAAAGGAGGGA 1159
Query 1236 GACCTCAG---GTTACCGATGATCAACAAGGAGAGAGGCCTCCTGAATGcaaacaacagt 1292
|| || || ||| |||| | ||||||| |||||||| || || ||||| |||||||
Sbjct 1160 GATCTAAGATAGTTGGTGATGGTGAACAAGGTGAGAGGCCACCAGAGTGCAAGCAACAGT 1219
Query 1293 aa 1294
||
Sbjct 1220 AA 1221
> Ahg887601 jgi|Araly1|887601|Al_scaffold_0052_3
Length=567
Score = 802 bits (434), Expect = 0.0
Identities = 450/458 (98%), Gaps = 0/458 (0%)
Strand=Plus/Plus
Query 548 CCTAGTTTCTGGCTGACTGCTCTGAAAAATAATGATGTTATATCTGAAGAGATCACAGAG 607
||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1 CCTAGTTTCTGGCTGACCGCTCTGAAAAACAATGATGTTATTTCTGAGGAGATCACAGAG 60
Query 608 CGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGGTGCAAGATTGAAGAACCA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGGTGCAAGATTGAAGAACCA 120
Query 668 AAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTACTTCAAAAACACCCTATTA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTACTTCAAAAACACCCTATTA 180
Query 728 ACAAAGGCGTATCATATGATTGATGAAGATGAGCCTCTGCTTGAGAAGGCTATTGGGACA 787
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAAAGGCATATCATATGATTGATGAAGATGAGCCTCTGCTTGAGAAGGCTATTGGGACG 240
Query 788 GAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATTCTTAAGAAGAAGCCTAAG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATTCTTAAGAAGAAGCCTAAG 300
Query 848 AAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGATTGTGAAAGCTTCTTCAAC 907
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGATTGTGAAAGCTTTTTCAAC 360
Query 908 TTCTTCAATCCTCCCCAAGTTCCTGATGATGATGAAGACATTGACGAAGAAAGAGCCGAG 967
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTCAATCCTCCCCAAGTTCCCGATGATGATGAAGACATTGACGAAGAAAGAGCCGAG 420
Query 968 GAACTTCAGAATCTGATGGAACAAGATTATGACATTGG 1005
||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAACTTCAGAATCTGATGGAACAAGATTATGACATTGG 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62087099350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5