BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56960.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917392 jgi|Araly1|917392|Al_scaffold_0008_2143 2028 0.0
Ahg887699 jgi|Araly1|887699|Al_scaffold_0290_1 446 3e-124
Ahg887602 jgi|Araly1|887602|Al_scaffold_0052_4 255 5e-67
> Ahg917392 jgi|Araly1|917392|Al_scaffold_0008_2143
Length=1389
Score = 2028 bits (1098), Expect = 0.0
Identities = 1306/1405 (93%), Gaps = 20/1405 (1%)
Strand=Plus/Plus
Query 1 ATGATGCATTTGATTTTGAGCTGCAGCTATTTAATATCAATGGATGGATATTACAATGAA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGATGCATTTGATTTTGAGCTGCAGCTATTTGATATCAATGGATGGATATTACAATGAA 60
Query 61 GCTTCTGAAGAACCTTCTTCGTCTTCTTCTTCTGGAAGTTTAGCTAGGAGCTTGTTCCAT 120
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct 61 GCTTCTGAAGAACCTTCTTCTTCTTCTTCTTCCGGAAGTTTAGCTAGAAGCTTATTCCAT 120
Query 121 GAGTATCGCCAATCCGTTATCCCGCTCCAAAATGGGCATGTGCCAAGCATGGCGTTCATG 180
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 121 GAGTATCGCCAATCCGTTATCCCACTCCAAAATGGGCATGTACCAAGCATGGCGTTCATG 180
Query 181 AACAATCTTCCATACGTAGAAATTCGACCACAAGAGAGTCAAAGACTTGCTTTTAACGAC 240
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AACAATCTTCCATACGTAGAGATTCGACCACAAGAGATTCAAAGACTTGCTTTTAACGAC 240
Query 241 ACACAACGTCTCTTCTATCAGATGAAAATTGAAGCAAGTCTTCGAGAATGGTTCCCTGAA 300
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GCACAACGTCTATTCTATCAGATGAAAATAGAAGCAAGTCTTCGAGAATGGTTCCCTGAA 300
Query 301 GATTTCAATAGAAAGTCTTCTCCGGCAAACTCCGATTATCTCCGGCCACCTCATTATCCC 360
||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||
Sbjct 301 GATTTCAATAGAAAGTCTTCTCCGGTAAACTCCGACTATCTCCGGCCACCGCATCATCCA 360
Query 361 TCTTCATCGTCTTCTTCTCTTAGTCCCAACAACATCTCCGAATATTCCTCTCTTTTGTTC 420
|||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 361 TCTTCATCTTCTTCTTCTCTTAGTCCCAACAACGTCTCTGAATATTCCTCTCTTTTATTC 420
Query 421 CCACTCATCCCTAAACCTTCAACGACGACTGAGGCCGTTAACGTTCCGGTACTTCCACCG 480
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 421 CCACTCATCCCTAAACCTTCAACGACGACTGAAGCCGTTAACGTTCCGGCACTTCCACC- 479
Query 481 C-TAGCTCCGATCAATATGATCCATCCACAGCATCAAGAGCCTTTATTCCGTAACCGTCA 539
| |||||||| ||||||||||||||| ||| || ||||||||||| |||||||||||| |
Sbjct 480 CTTAGCTCCGGTCAATATGATCCATCAACAACAACAAGAGCCTTTGTTCCGTAACCGTGA 539
Query 540 ACGTGAGGAAGAAGCAATGACGCAAGCAATCTTAGCGGTTTTAACGGGGCCATCAAGTCC 599
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 540 ACGTGAGGAAGAAGCAATGACAAAAGCTATCTTAGCGGTTTTAACGGGGCCATCAAGTCC 599
Query 600 TCCGTCAACTTCTTCCTCGCCGCAGCGTAAAGGAAGAGCCACCGCTTTTAAGAGATATTA 659
|||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 600 TCCGTCTACTTCTTCCTCGCCACAGCGTAAAAGAAGAGCCACCGCTTTTAATAGATATTA 659
Query 660 CTCCATGATTAGTGACCGCGGTAGAGCCCCGCTTCCGAGTGTT-CGGAAGCAAAGTATGA 718
|||||||||||||| || ||||||||| ||||| |||||| || ||||||||||| ||||
Sbjct 660 CTCCATGATTAGTGGCCACGGTAGAGCGCCGCTGCCGAGT-TTACGGAAGCAAAGCATGA 718
Query 719 TGACAAGAGCGATGTCCTTCTACAATAGGCTTAACATTAACCAGAGAGAGCGTTTTACTA 778
||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 TGAAAAGAGCGATTTCCTTCTACAATAGGCTTAACATTTACCAGAGAGAGCGTTTTACTA 778
Query 779 GGGAAAACGCTACTACACACGGCGAGGGAAGCGGTGGAAGTGGAGGGGGTGGACGTTATA 838
||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||| ||
Sbjct 779 GGGAAAACGCTACTACACACGGCGAAGGAAGTGGTGGAAGCAGCGGGGGTGGACGTTTTA 838
Query 839 CTAGCGGGCCAAGCGCAACGCAACTGCAACATATGATATCGGAGAGGAAACGGCGAGAGA 898
| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 839 CCAGCGGGCCAAGCGCAACGCAATTGCATCATATGATATCGGAGAGGAAACGGCGAGAGA 898
Query 899 AGCTTAATGAGAGCTTTCAAGCATTGAGATCTCTCCTTCCTCCCGGAACTAAGAAAGATA 958
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 AGCTTAACGAGAGCTTTCAAGCATTGAGATCTCTCCTTCCTCCGGGAACTAAGAAAGATA 958
Query 959 AAGCATCGGTCCTCTCCATTGCAAGAGAGCAACTATCTTCTTTGCAAGGTGAGATTTCGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 AAGCATCGGTCCTCTCCATTGCAAGAGAGCAACTATCTTCTTTGCAAGGCGAGATTTCGA 1018
Query 1019 AACTACTAGAGAGAAATCGGGAGGTAGAGGCAAAGCTAGCAGGAGAAAGAGAGATTGAAA 1078
|||||||||| ||||| ||| || | ||||| |||||||| ||||||||||| ||| |||
Sbjct 1019 AACTACTAGAAAGAAACCGGAAGCTGGAGGCGAAGCTAGCCGGAGAAAGAGATATTAAAA 1078
Query 1079 ATGATTTACGACCCGAA-GAGAGGTTTAACGTTCGTATAAGACATATA-CCTGAATCAAC 1136
||||||||| |||| || |||||||||||||||| |||||| |||||| || ||||||||
Sbjct 1079 ATGATTTACTACCC-AATGAGAGGTTTAACGTTCATATAAGTCATATATCC-GAATCAAC 1136
Query 1137 ATCTAGAGAGAGGACTTTGGATCTACGAGTTGTTCTAAGGGGAGACATCATTAGGGTTGA 1196
||| |||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct 1137 ATCAAGAGAGAGGATTTTGGATCTAAGAGTTGTTCTAAGAGGAGACAGCATTAGGGTTGA 1196
Query 1197 TGATTTGATGATAAGACTTCTCGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTGTC 1256
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1197 TGATTTGATGATAAGACTTCTTGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTATC 1256
Query 1257 AATCGAAGCTCGAACTCTAGCTAGAGCAGAGGGGGATACTTCAATTGTTCTTGTGATCAG 1316
||||||||||||||||| |||||| | || |||||| |||||||||||| |
Sbjct 1257 AATCGAAGCTCGAACTCGAGCTAG-G--GA------TACTTCGGTTGTTCTTGTGA---G 1304
Query 1317 CTTAAGGCTCAAGATTGAGGGTGAATGGGACGAATCAGCCTTCCAAGAAGCAGTCAGAAG 1376
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1305 CTTAAGGCTCAAGATTGAGGGTGAATGCGACGAATCAGCCTTCCAAGAAGCAGTCAGAAG 1364
Query 1377 GGTTGTTGCTGACTTGGCTCACTGA 1401
|||||||||||||||||||||||||
Sbjct 1365 GGTTGTTGCTGACTTGGCTCACTGA 1389
> Ahg887699 jgi|Araly1|887699|Al_scaffold_0290_1
Length=282
Score = 446 bits (241), Expect = 3e-124
Identities = 271/285 (95%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 40 ATGGATGGATATTACAATGAAGCTTCTGAAGAACCTTCTTCGTCTTCTTCTTCTGGAAGT 99
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGGATGGATATTACAATGAAGCTTCTGAAGAACCTTCTTCTTCTTCTTCTTCCGGAAGT 60
Query 100 TTAGCTAGGAGCTTGTTCCATGAGTATCGCCAATCCGTTATCCCGCTCCAAAATGGGCAT 159
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 61 TTAGCTAGAAGCTTATTCCATGAGTATCGCCAATCCGTTATCCCACTCCAAAAT---CAT 117
Query 160 GTGCCAAGCATGGCGTTCATGAACAATCTTCCATACGTAGAAATTCGACCACAAGAGAGT 219
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 118 GTACCAAGCATGGCGTTCATGAACAATCTTCCATACGTAGAGATTCGACCACAAGAGATT 177
Query 220 CAAAGACTTGCTTTTAACGACACACAACGTCTCTTCTATCAGATGAAAATTGAAGCAAGT 279
||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 178 CAAAGACTTGCTTTTAACGACGCACAACGTCTATTCTATCAGATGAAAATAGAAGCAAGT 237
Query 280 CTTCGAGAATGGTTCCCTGAAGATTTCAATAGAAAGTCTTCTCCG 324
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTCGAGAATGGTTCCCTGAAGATTTCAATAGAAAGTCTTCTCCG 282
> Ahg887602 jgi|Araly1|887602|Al_scaffold_0052_4
Length=186
Score = 255 bits (138), Expect = 5e-67
Identities = 180/198 (91%), Gaps = 12/198 (6%)
Strand=Plus/Plus
Query 1204 ATGATAAGACTTCTCGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTGTCAATCGAA 1263
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGATAAGACTTCTTGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTATCAATCGAA 60
Query 1264 GCTCGAACTCTAGCTAGAGCAGAGGGGGATACTTCAATTGTTCTTGTGATCAGCTTAAGG 1323
||||||| || | |||| | |||||||||| ||||||||||| |||||||||
Sbjct 61 GCTCGAA--CT--C--GAGC-TA--GGGATACTTCGGTTGTTCTTGTG---AGCTTAAGG 108
Query 1324 CTCAAGATTGAGGGTGAATGGGACGAATCAGCCTTCCAAGAAGCAGTCAGAAGGGTTGTT 1383
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 109 CTCAAGATTGAGGGTGAATGCGACGAATCAGCCTTCCAAGAAGCAGTCAGAAGGGTTGTT 168
Query 1384 GCTGACTTGGCTCACTGA 1401
||||||||||||||||||
Sbjct 169 GCTGACTTGGCTCACTGA 186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5