BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G56970.1 Length=1595 Score E Sequences producing significant alignments: (Bits) Value Ahg950369 jgi|Araly1|950369|scaffold_802256.1 2527 0.0 Ahg359205 jgi|Araly1|359205|fgenesh1_pg.C_scaffold_52000005 750 0.0 Ahg889155 jgi|Araly1|889155|Al_scaffold_0007_1141 121 2e-26 > Ahg950369 jgi|Araly1|950369|scaffold_802256.1 Length=1597 Score = 2527 bits (1368), Expect = 0.0 Identities = 1521/1595 (95%), Gaps = 10/1595 (1%) Strand=Plus/Plus Query 8 TTATTTCTC--aaaaaaaaTGGCGAGTTATAA-TCTTCGTTCACAAGTTCGTCTTATAGC 64 ||||||||| ||||||||||||||||||||| | ||| ||||||||||| ||||||| | Sbjct 3 TTATTTCTCATAAAAAAAATGGCGAGTTATAAGT-TTCTTTCACAAGTTCATCTTATA-C 60 Query 65 -AATAACAATAGTAATCATCATTACTCTCTCAACTCCGATCACAACCAACACATCACCAC 123 |||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||| Sbjct 61 TAATAACAATATTAATCATCGTTACTCTTTTAACTCCGATCACAACCAACACATCACCAC 120 Query 124 AACCATGGAATATCCTTTCACACAACGAATTCGCCGGAAAACTCAcctcctcctcctcct 183 ||||||||||||| ||||| | |||||| ||| ||||||| || ||| || ||||||||| Sbjct 121 AACCATGGAATATTCTTTCTCGCAACGACTTCACCGGAAAGCTAACCACCGCCTCCTCCT 180 Query 184 ccGTCGAATCAGCCGCCACAGATTTCGGCCACGTCACCAAAATCTTCCCTTCCGCCGTCT 243 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCGTCGAATCAGCCGCCATAGATTTCGGCCACGTCACCAAAATCTTCCCTTCCGCCGTCT 240 Query 244 TAATCCCTTCCTCCGTTGAAGACATCACAGATCTCATAAAACTCTCTTTTGACTCTCAA- 302 ||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 241 TAAACCCTTCATCCGTTGAAGACATCACAGATCTCATAAAACTCTCTTATGACTCTCAAT 300 Query 303 CTGTCTTTTCCTTTAGCCGCTCGTGGTCACGGACACAGCCACCGTGGCCAAGCCTCGGCT 362 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 301 CT-TCTTTTCCTTTAGCCGCTCGTGGTCACGGACACAGCCACCGTGGTCAAGCCTCGGCT 359 Query 363 AAAGACGGAGTTGTGGTCAACATGCGGTCCATGGTAAACCGGGATCGAGGTATCAAGGTG 422 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 360 AAAGACGGAGTTGTGGTCAACATGCGGTCCATGGTAAACCGGGATCGAGGCATCAAGGTG 419 Query 423 TCTAGGACCTGTTTATATGTTGACGTGGACGCTGCGTGGCTATGGATTGAGGTGTTGAAT 482 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TCTAGGACCGGTTTATACGTTGACGTGGACGCTGCGTGGCTATGGATTGAGGTGTTGAAT 479 Query 483 AAAACTTTGGAGTTAGGGTTAACGCCGGTTTCTTGGACGGATTATTTGTATTTAACAGTC 542 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 480 AAAACGTTGGAGTTAGGGTTAACGCCGGTTTCTTGGACGGATTATTTGTATTTAACGGTC 539 Query 543 GGTGGGACGTTATCAAACGGCGGAATTAGTGGACAAACGTTTCGGTACGGTCCACAGATC 602 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 540 GGTGGGACGTTATCTAACGGCGGAATTAGTGGACAAACGTTTCGGTGCGGTCCACAGATC 599 Query 603 ACTAATGTTCTAGAGATGGATGTTATTACTGGAAAAGGAGAGATTGCAACTTGTTCCAAG 662 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ACTAATGTTCTAGAGATGGATGTTATTACTGGAAAAGGAGAGATTGCAACTTGTTCCAAA 659 Query 663 GACATGAACTCGGATCTTTTCTTCGCGGTGTTAGGAGGTTTGGGTCAATTCGGCATTATA 722 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| || Sbjct 660 GACATAAACTCGGATCTTTTCTTCGCCGTGTTAGGAGGTTTGGGTCAATTCGGAATTCTA 719 Query 723 ACAAGAGCCAGAATTAAACTTGAAGTAGCTCCGAAAAGGGCCAAGTGGTTAAGGTTTCTA 782 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 720 ACAAGAGCCAGAATTAAACTCGAAGTAGCTCCAAAAAGGGCCAAGTGGTTAAGGTTTCTA 779 Query 783 TACATAGATTTCTCCGAATTCACAAGAGATCAAGAACGAGTGATATCGAAAACGGACGGT 842 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 780 TACATAGATTTCTCCGAATTCACAAGAGATCAAGAACGATTGATATCGAAAACGGACGGT 839 Query 843 GTAGATTTCTTAGAAGGTTCCATTATGGTGGACCATGGCCCACCGGATAACTGGAGATCC 902 ||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 840 GTAGATTTCTTGGAAGGTTCCGTAATGGTGGACCATGGTCCACCGGATAACTGGAGATCC 899 Query 903 ACGTATTATCCACCGTCCGATCACTTGAGGATCGCCTCAATGGTCAAACGACATCGTGTC 962 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 900 ACGTATTATCCACCGTCCGATCACTTGAGGATTGCCTCAATGGTCAAACGACATCGTGTC 959 Query 963 ATCTACTGCCTTGAAGTCGTCAAGTATTACGACGAAACTTCTCAATACACAGTCAACGAG 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 ATCTACTGCCTTGAAGTCGTCAAGTATTACGACGAAACTTCTCAATACACAGTCAACGAG 1019 Query 1023 GAAATGGAGGAGTTAAGCGATAGTTTAAACCATGTAAGAGGGTTTATGTACGAGAAAGAT 1082 |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| Sbjct 1020 GAAATGGAGGAGTTAAGCGAGAGTTTGAACTATGTAAGAGGGTTTATGTACGAGAAAGAT 1079 Query 1083 GTGACGTATATGGATTTCCTAAACCGAGTTCGAACCGGAGAGCTAAACCTGAAATCCAAA 1142 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 1080 GTGACGTATATGGATTTCTTAAACCGGGTTCGAACCGGAGAGCTAAACCTGAAATCCAAA 1139 Query 1143 GGCCAATGGGATGTTCCACATCCATGGCTTAATCTCTTCGTACCAAAAACTCAAATCTCC 1202 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| Sbjct 1140 GGCCAATGGGATGTTCCACATCCATGGCTTAATCTCTTCGTACCCAAATCTCAAATTTCC 1199 Query 1203 AAATTTGATGATGGTGTTTTTAAGGGTATTATCCTAAGAAATAACATCACTAGCGGTCCT 1262 |||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| Sbjct 1200 AAATTTGATGATGGTGTTTTCAAGGGTATTATCCTAAGAAATAACATTACTACCGGTCCC 1259 Query 1263 GTTCTTGTTTATCCTATGAATCGCAACAAGTGGAATGATCGGATGTCTGCCGCTATACCC 1322 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1260 GTTCTTGTTTATCCTATGAATCGCAACAAGTGGAATGATCGAATGTCTGCCGCTATACCT 1319 Query 1323 GAGGAAGATGTATTTTATGCGGTAGGGTTTTTAAGATCCGCGGGTTTTGACAATTGGGAG 1382 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1320 GAGGAAGATGTATTTTATGCGGTAGGGCTTTTAAGATCTGCGGGTTTTGACAATTGGGAG 1379 Query 1383 GCTTTTGATCAAGAAAACATGGAAATACTGAAGTTTTGTGAGGATGCTAATATGGGGGTT 1442 |||| |||||||||||| ||||||||| | |||||||||||||||| ||||||||||||| Sbjct 1380 GCTTATGATCAAGAAAATATGGAAATATTAAAGTTTTGTGAGGATGGTAATATGGGGGTT 1439 Query 1443 ATACAATATCTTCCTTATCATTCATCACAAGAAGGATGGGTTAGACATTTTGGTCCGAGG 1502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 ATACAATATCTTCCTTATCATTCATCACAAGAAGGATGGGTTAGACATTTTGGTCCGAGG 1499 Query 1503 TGGAATATTTTCGTAGAGAGaaaatataaatatgatcccaaaatgatattatcaccggga 1562 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 TGGGATATTTTCGTAAAGAGAAAATATAAATATGATCCCAAAATGATATTATCACCGGGA 1559 Query 1563 caaaatatatttcaaaaaataaaCT--CGAGTTAG 1595 ||||||||||||||| ||||||||| |||||||| Sbjct 1560 CAAAATATATTTCAATAAATAAACTATCGAGTTAG 1594 > Ahg359205 jgi|Araly1|359205|fgenesh1_pg.C_scaffold_52000005 Length=780 Score = 750 bits (406), Expect = 0.0 Identities = 440/457 (96%), Gaps = 0/457 (0%) Strand=Plus/Plus Query 633 GGAAAAGGAGAGATTGCAACTTGTTCCAAGGACATGAACTCGGATCTTTTCTTCGCGGTG 692 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 37 GGAAAAGGAGAGATTGCAACTTGTTCCAAAGACATAAACTCGGATCTTTTCTTCGCCGTG 96 Query 693 TTAGGAGGTTTGGGTCAATTCGGCATTATAACAAGAGCCAGAATTAAACTTGAAGTAGCT 752 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct 97 TTAGGAGGTTTGGGTCAATTCGGAATTCTAACAAGAGCCAGAATTAAACTCGAAGTAGCT 156 Query 753 CCGAAAAGGGCCAAGTGGTTAAGGTTTCTATACATAGATTTCTCCGAATTCACAAGAGAT 812 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 CCAAAAAGGGCCAAGTGGTTAAGGTTTCTATACATAGATTTCTCCGAATTCACAAGAGAT 216 Query 813 CAAGAACGAGTGATATCGAAAACGGACGGTGTAGATTTCTTAGAAGGTTCCATTATGGTG 872 ||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |||||| Sbjct 217 CAAGAACGATTGATATCGAAAACGGACGGTGTAGATTTCTTGGAAGGTTCCGTAATGGTG 276 Query 873 GACCATGGCCCACCGGATAACTGGAGATCCACGTATTATCCACCGTCCGATCACTTGAGG 932 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 GACCATGGTCCACCGGATAACTGGAGATCCACGTATTATCCACCGTCCGATCACTTGAGG 336 Query 933 ATCGCCTCAATGGTCAAACGACATCGTGTCATCTACTGCCTTGAAGTCGTCAAGTATTAC 992 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 337 ATTGCCTCAATGGTCAAACGACATCGTGTCATCTACTGCCTTGAAGTCGTCAAGTATTAC 396 Query 993 GACGAAACTTCTCAATACACAGTCAACGAGGAAATGGAGGAGTTAAGCGATAGTTTAAAC 1052 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 397 GACGAAACTTCTCAATACACAGTCAACGAGGAAATGGAGGAGTTAAGCGAGAGTTTGAAC 456 Query 1053 CATGTAAGAGGGTTTATGTACGAGAAAGATGTGACGT 1089 |||| ||||||||||||||||||||||||||||||| Sbjct 457 TATGTCAGAGGGTTTATGTACGAGAAAGATGTGACGT 493 Score = 468 bits (253), Expect = 6e-131 Identities = 275/286 (96%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 1292 GTGGAATGATCGGATGTCTGCCGCTATACCCGAGGAAGATGTATTTTATGCGGTAGGGTT 1351 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 492 GTGGAATGATCGAATGTCTGCCGCTATACCTGAGGAAGATGTATTTTATGCGGTAGGGTT 551 Query 1352 TTTAAGATCCGCGGGTTTTGACAATTGGGAGGCTTTTGATCAAGAAAACATGGAAATACT 1411 | ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 552 TCTAAGATCTGCGGGTTTTGACAATTGGGAGGCTTATGATCAAGAAAATATGGAAATATT 611 Query 1412 GAAGTTTTGTGAGGATGCTAATATGGGGGTTATACAATATCTTCCTTATCATTCATCACA 1471 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 612 AAAGTTTTGTGAGGATGGTAATATGGGGGTTATACAATATCTTCCTTATCATTCATCACA 671 Query 1472 AGAAGGATGGGTTAGACATTTTGGTCCGAGGTGGAATATTTTCGTAGAGAGaaaatataa 1531 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 672 AGAAGGATGGGTTAGACATTTTGGTCCGAGGTGGGATATTTTCGTAAAGAGAAAATATAA 731 Query 1532 atatgatcccaaaatgatattatcaccgggacaaaatatatttcaa 1577 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 ATATGATCCCAAAATGATATTATCACCGGGACAAAATATATTTCAA 777 > Ahg889155 jgi|Araly1|889155|Al_scaffold_0007_1141 Length=1578 Score = 121 bits (65), Expect = 2e-26 Identities = 186/242 (77%), Gaps = 18/242 (7%) Strand=Plus/Plus Query 505 CGCCGGTTTCTTGGACGGATTATTTGTAT-TTAACAGTCGGTGGGACGTTATCAAACGGC 563 ||||||||||||||||||||||||||||| ||| | || || |||||||| || |||| | Sbjct 500 CGCCGGTTTCTTGGACGGATTATTTGTATCTTAGC-GTTGGCGGGACGTTGTCCAACG-C 557 Query 564 -GGAATTAGTGGACAAACGTTTCGGTACGGTCCACAGATCACTAATGTTC-TAGAGATGG 621 ||||| |||| || |||||| | |||| || ||||| | || |||| | ||| | | Sbjct 558 TGGAATCGGTGGTCAGACGTTTAGACACGGCCCTCAGATTAGTAGCGTTCAT-GAGCTTG 616 Query 622 ATGTTATTACTGGAAAAGGAGAGAT--TGCAACTTGTTC-C-AAGGACATGAACTCGGAT 677 | || |||||||||||||| || || || | |||| || | || | | ||| | || Sbjct 617 ACGTCATTACTGGAAAAGGTGAAATGATG-A-CTTGCTCGCCAAAGTTA--AACCCTGAA 672 Query 678 CTT-TTCT-TCGCGGTGTTAGGAGGTTTGGGTCAATTCGGCATTATAACAAGAGCCAGAA 735 || |||| | | ||| ||||||||| ||||||||||||| |||||||| || ||||| | Sbjct 673 -TTGTTCTATGG-GGTTTTAGGAGGTCTGGGTCAATTCGGTATTATAACGAGGGCCAGGA 730 Query 736 TT 737 || Sbjct 731 TT 732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59763594405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5