BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56970.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950369 jgi|Araly1|950369|scaffold_802256.1 2527 0.0
Ahg359205 jgi|Araly1|359205|fgenesh1_pg.C_scaffold_52000005 750 0.0
Ahg889155 jgi|Araly1|889155|Al_scaffold_0007_1141 121 2e-26
> Ahg950369 jgi|Araly1|950369|scaffold_802256.1
Length=1597
Score = 2527 bits (1368), Expect = 0.0
Identities = 1521/1595 (95%), Gaps = 10/1595 (1%)
Strand=Plus/Plus
Query 8 TTATTTCTC--aaaaaaaaTGGCGAGTTATAA-TCTTCGTTCACAAGTTCGTCTTATAGC 64
||||||||| ||||||||||||||||||||| | ||| ||||||||||| ||||||| |
Sbjct 3 TTATTTCTCATAAAAAAAATGGCGAGTTATAAGT-TTCTTTCACAAGTTCATCTTATA-C 60
Query 65 -AATAACAATAGTAATCATCATTACTCTCTCAACTCCGATCACAACCAACACATCACCAC 123
|||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 61 TAATAACAATATTAATCATCGTTACTCTTTTAACTCCGATCACAACCAACACATCACCAC 120
Query 124 AACCATGGAATATCCTTTCACACAACGAATTCGCCGGAAAACTCAcctcctcctcctcct 183
||||||||||||| ||||| | |||||| ||| ||||||| || ||| || |||||||||
Sbjct 121 AACCATGGAATATTCTTTCTCGCAACGACTTCACCGGAAAGCTAACCACCGCCTCCTCCT 180
Query 184 ccGTCGAATCAGCCGCCACAGATTTCGGCCACGTCACCAAAATCTTCCCTTCCGCCGTCT 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGTCGAATCAGCCGCCATAGATTTCGGCCACGTCACCAAAATCTTCCCTTCCGCCGTCT 240
Query 244 TAATCCCTTCCTCCGTTGAAGACATCACAGATCTCATAAAACTCTCTTTTGACTCTCAA- 302
||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 TAAACCCTTCATCCGTTGAAGACATCACAGATCTCATAAAACTCTCTTATGACTCTCAAT 300
Query 303 CTGTCTTTTCCTTTAGCCGCTCGTGGTCACGGACACAGCCACCGTGGCCAAGCCTCGGCT 362
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 CT-TCTTTTCCTTTAGCCGCTCGTGGTCACGGACACAGCCACCGTGGTCAAGCCTCGGCT 359
Query 363 AAAGACGGAGTTGTGGTCAACATGCGGTCCATGGTAAACCGGGATCGAGGTATCAAGGTG 422
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 AAAGACGGAGTTGTGGTCAACATGCGGTCCATGGTAAACCGGGATCGAGGCATCAAGGTG 419
Query 423 TCTAGGACCTGTTTATATGTTGACGTGGACGCTGCGTGGCTATGGATTGAGGTGTTGAAT 482
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTAGGACCGGTTTATACGTTGACGTGGACGCTGCGTGGCTATGGATTGAGGTGTTGAAT 479
Query 483 AAAACTTTGGAGTTAGGGTTAACGCCGGTTTCTTGGACGGATTATTTGTATTTAACAGTC 542
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 AAAACGTTGGAGTTAGGGTTAACGCCGGTTTCTTGGACGGATTATTTGTATTTAACGGTC 539
Query 543 GGTGGGACGTTATCAAACGGCGGAATTAGTGGACAAACGTTTCGGTACGGTCCACAGATC 602
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 GGTGGGACGTTATCTAACGGCGGAATTAGTGGACAAACGTTTCGGTGCGGTCCACAGATC 599
Query 603 ACTAATGTTCTAGAGATGGATGTTATTACTGGAAAAGGAGAGATTGCAACTTGTTCCAAG 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTAATGTTCTAGAGATGGATGTTATTACTGGAAAAGGAGAGATTGCAACTTGTTCCAAA 659
Query 663 GACATGAACTCGGATCTTTTCTTCGCGGTGTTAGGAGGTTTGGGTCAATTCGGCATTATA 722
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 660 GACATAAACTCGGATCTTTTCTTCGCCGTGTTAGGAGGTTTGGGTCAATTCGGAATTCTA 719
Query 723 ACAAGAGCCAGAATTAAACTTGAAGTAGCTCCGAAAAGGGCCAAGTGGTTAAGGTTTCTA 782
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 720 ACAAGAGCCAGAATTAAACTCGAAGTAGCTCCAAAAAGGGCCAAGTGGTTAAGGTTTCTA 779
Query 783 TACATAGATTTCTCCGAATTCACAAGAGATCAAGAACGAGTGATATCGAAAACGGACGGT 842
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TACATAGATTTCTCCGAATTCACAAGAGATCAAGAACGATTGATATCGAAAACGGACGGT 839
Query 843 GTAGATTTCTTAGAAGGTTCCATTATGGTGGACCATGGCCCACCGGATAACTGGAGATCC 902
||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 840 GTAGATTTCTTGGAAGGTTCCGTAATGGTGGACCATGGTCCACCGGATAACTGGAGATCC 899
Query 903 ACGTATTATCCACCGTCCGATCACTTGAGGATCGCCTCAATGGTCAAACGACATCGTGTC 962
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 900 ACGTATTATCCACCGTCCGATCACTTGAGGATTGCCTCAATGGTCAAACGACATCGTGTC 959
Query 963 ATCTACTGCCTTGAAGTCGTCAAGTATTACGACGAAACTTCTCAATACACAGTCAACGAG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATCTACTGCCTTGAAGTCGTCAAGTATTACGACGAAACTTCTCAATACACAGTCAACGAG 1019
Query 1023 GAAATGGAGGAGTTAAGCGATAGTTTAAACCATGTAAGAGGGTTTATGTACGAGAAAGAT 1082
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 1020 GAAATGGAGGAGTTAAGCGAGAGTTTGAACTATGTAAGAGGGTTTATGTACGAGAAAGAT 1079
Query 1083 GTGACGTATATGGATTTCCTAAACCGAGTTCGAACCGGAGAGCTAAACCTGAAATCCAAA 1142
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 GTGACGTATATGGATTTCTTAAACCGGGTTCGAACCGGAGAGCTAAACCTGAAATCCAAA 1139
Query 1143 GGCCAATGGGATGTTCCACATCCATGGCTTAATCTCTTCGTACCAAAAACTCAAATCTCC 1202
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1140 GGCCAATGGGATGTTCCACATCCATGGCTTAATCTCTTCGTACCCAAATCTCAAATTTCC 1199
Query 1203 AAATTTGATGATGGTGTTTTTAAGGGTATTATCCTAAGAAATAACATCACTAGCGGTCCT 1262
|||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 1200 AAATTTGATGATGGTGTTTTCAAGGGTATTATCCTAAGAAATAACATTACTACCGGTCCC 1259
Query 1263 GTTCTTGTTTATCCTATGAATCGCAACAAGTGGAATGATCGGATGTCTGCCGCTATACCC 1322
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1260 GTTCTTGTTTATCCTATGAATCGCAACAAGTGGAATGATCGAATGTCTGCCGCTATACCT 1319
Query 1323 GAGGAAGATGTATTTTATGCGGTAGGGTTTTTAAGATCCGCGGGTTTTGACAATTGGGAG 1382
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1320 GAGGAAGATGTATTTTATGCGGTAGGGCTTTTAAGATCTGCGGGTTTTGACAATTGGGAG 1379
Query 1383 GCTTTTGATCAAGAAAACATGGAAATACTGAAGTTTTGTGAGGATGCTAATATGGGGGTT 1442
|||| |||||||||||| ||||||||| | |||||||||||||||| |||||||||||||
Sbjct 1380 GCTTATGATCAAGAAAATATGGAAATATTAAAGTTTTGTGAGGATGGTAATATGGGGGTT 1439
Query 1443 ATACAATATCTTCCTTATCATTCATCACAAGAAGGATGGGTTAGACATTTTGGTCCGAGG 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ATACAATATCTTCCTTATCATTCATCACAAGAAGGATGGGTTAGACATTTTGGTCCGAGG 1499
Query 1503 TGGAATATTTTCGTAGAGAGaaaatataaatatgatcccaaaatgatattatcaccggga 1562
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGGGATATTTTCGTAAAGAGAAAATATAAATATGATCCCAAAATGATATTATCACCGGGA 1559
Query 1563 caaaatatatttcaaaaaataaaCT--CGAGTTAG 1595
||||||||||||||| ||||||||| ||||||||
Sbjct 1560 CAAAATATATTTCAATAAATAAACTATCGAGTTAG 1594
> Ahg359205 jgi|Araly1|359205|fgenesh1_pg.C_scaffold_52000005
Length=780
Score = 750 bits (406), Expect = 0.0
Identities = 440/457 (96%), Gaps = 0/457 (0%)
Strand=Plus/Plus
Query 633 GGAAAAGGAGAGATTGCAACTTGTTCCAAGGACATGAACTCGGATCTTTTCTTCGCGGTG 692
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 37 GGAAAAGGAGAGATTGCAACTTGTTCCAAAGACATAAACTCGGATCTTTTCTTCGCCGTG 96
Query 693 TTAGGAGGTTTGGGTCAATTCGGCATTATAACAAGAGCCAGAATTAAACTTGAAGTAGCT 752
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 97 TTAGGAGGTTTGGGTCAATTCGGAATTCTAACAAGAGCCAGAATTAAACTCGAAGTAGCT 156
Query 753 CCGAAAAGGGCCAAGTGGTTAAGGTTTCTATACATAGATTTCTCCGAATTCACAAGAGAT 812
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 CCAAAAAGGGCCAAGTGGTTAAGGTTTCTATACATAGATTTCTCCGAATTCACAAGAGAT 216
Query 813 CAAGAACGAGTGATATCGAAAACGGACGGTGTAGATTTCTTAGAAGGTTCCATTATGGTG 872
||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 217 CAAGAACGATTGATATCGAAAACGGACGGTGTAGATTTCTTGGAAGGTTCCGTAATGGTG 276
Query 873 GACCATGGCCCACCGGATAACTGGAGATCCACGTATTATCCACCGTCCGATCACTTGAGG 932
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GACCATGGTCCACCGGATAACTGGAGATCCACGTATTATCCACCGTCCGATCACTTGAGG 336
Query 933 ATCGCCTCAATGGTCAAACGACATCGTGTCATCTACTGCCTTGAAGTCGTCAAGTATTAC 992
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ATTGCCTCAATGGTCAAACGACATCGTGTCATCTACTGCCTTGAAGTCGTCAAGTATTAC 396
Query 993 GACGAAACTTCTCAATACACAGTCAACGAGGAAATGGAGGAGTTAAGCGATAGTTTAAAC 1052
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 397 GACGAAACTTCTCAATACACAGTCAACGAGGAAATGGAGGAGTTAAGCGAGAGTTTGAAC 456
Query 1053 CATGTAAGAGGGTTTATGTACGAGAAAGATGTGACGT 1089
|||| |||||||||||||||||||||||||||||||
Sbjct 457 TATGTCAGAGGGTTTATGTACGAGAAAGATGTGACGT 493
Score = 468 bits (253), Expect = 6e-131
Identities = 275/286 (96%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 1292 GTGGAATGATCGGATGTCTGCCGCTATACCCGAGGAAGATGTATTTTATGCGGTAGGGTT 1351
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 492 GTGGAATGATCGAATGTCTGCCGCTATACCTGAGGAAGATGTATTTTATGCGGTAGGGTT 551
Query 1352 TTTAAGATCCGCGGGTTTTGACAATTGGGAGGCTTTTGATCAAGAAAACATGGAAATACT 1411
| ||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 552 TCTAAGATCTGCGGGTTTTGACAATTGGGAGGCTTATGATCAAGAAAATATGGAAATATT 611
Query 1412 GAAGTTTTGTGAGGATGCTAATATGGGGGTTATACAATATCTTCCTTATCATTCATCACA 1471
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 AAAGTTTTGTGAGGATGGTAATATGGGGGTTATACAATATCTTCCTTATCATTCATCACA 671
Query 1472 AGAAGGATGGGTTAGACATTTTGGTCCGAGGTGGAATATTTTCGTAGAGAGaaaatataa 1531
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 672 AGAAGGATGGGTTAGACATTTTGGTCCGAGGTGGGATATTTTCGTAAAGAGAAAATATAA 731
Query 1532 atatgatcccaaaatgatattatcaccgggacaaaatatatttcaa 1577
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 ATATGATCCCAAAATGATATTATCACCGGGACAAAATATATTTCAA 777
> Ahg889155 jgi|Araly1|889155|Al_scaffold_0007_1141
Length=1578
Score = 121 bits (65), Expect = 2e-26
Identities = 186/242 (77%), Gaps = 18/242 (7%)
Strand=Plus/Plus
Query 505 CGCCGGTTTCTTGGACGGATTATTTGTAT-TTAACAGTCGGTGGGACGTTATCAAACGGC 563
||||||||||||||||||||||||||||| ||| | || || |||||||| || |||| |
Sbjct 500 CGCCGGTTTCTTGGACGGATTATTTGTATCTTAGC-GTTGGCGGGACGTTGTCCAACG-C 557
Query 564 -GGAATTAGTGGACAAACGTTTCGGTACGGTCCACAGATCACTAATGTTC-TAGAGATGG 621
||||| |||| || |||||| | |||| || ||||| | || |||| | ||| | |
Sbjct 558 TGGAATCGGTGGTCAGACGTTTAGACACGGCCCTCAGATTAGTAGCGTTCAT-GAGCTTG 616
Query 622 ATGTTATTACTGGAAAAGGAGAGAT--TGCAACTTGTTC-C-AAGGACATGAACTCGGAT 677
| || |||||||||||||| || || || | |||| || | || | | ||| | ||
Sbjct 617 ACGTCATTACTGGAAAAGGTGAAATGATG-A-CTTGCTCGCCAAAGTTA--AACCCTGAA 672
Query 678 CTT-TTCT-TCGCGGTGTTAGGAGGTTTGGGTCAATTCGGCATTATAACAAGAGCCAGAA 735
|| |||| | | ||| ||||||||| ||||||||||||| |||||||| || ||||| |
Sbjct 673 -TTGTTCTATGG-GGTTTTAGGAGGTCTGGGTCAATTCGGTATTATAACGAGGGCCAGGA 730
Query 736 TT 737
||
Sbjct 731 TT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5