BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56980.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497208 jgi|Araly1|497208|fgenesh2_kg.52__1__AT5G56980.1 1609 0.0
Ahg495787 jgi|Araly1|495787|fgenesh2_kg.8__1603__AT5G56980.1 1598 0.0
> Ahg497208 jgi|Araly1|497208|fgenesh2_kg.52__1__AT5G56980.1
Length=1480
Score = 1609 bits (871), Expect = 0.0
Identities = 1071/1166 (92%), Gaps = 19/1166 (2%)
Strand=Plus/Plus
Query 26 AAAAATGGAGTTACTAACGACGGTCGCGAGCTTTTTCACTCCGACGACTCTTTTCCTCCT 85
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 1 AAAAATGGAGTTACTAACGACCGTCGCGAGCTTTTTCACTCCGACGGCTCTCTTCCTCCT 60
Query 86 TCTTAATCTTATGATCGGTACAATCGTCGTAACCTCTCGACTCGGGTCAGGTTCAAGAAA 145
||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 61 TCTCAATCTTATGATCGGCACAATCGTCGTAAGCTCTCGACTCGGGTCGGGTTCAAGAAA 120
Query 146 ACATTACCAGCATCACGATGGATTCGGGTCAGGTCATGCTCCGGCTCCGTTAGCTAGAGC 205
||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||
Sbjct 121 ACATTACCAGCATCACGATGGGTTCTGGTCGGGTCATGCGCCGGCTCCGTTAGCTAGAGC 180
Query 206 TCCATCGATTATCGACCGAGTCAAGTCCATCAATTTTCATCTCTACAAATTTCCTCATCC 265
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCGTCGATTATCGACCGAGTCAAGTCCATCAATTTTCATCTCTACAAATTTCCTCATCC 240
Query 266 AGAAACTGAGCTTTTCTCGATGACAGCTCACCACGACATAATCGGGTCGGATCTTCATGT 325
||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 241 AGAAACTGAGCTTTTTTCGATGACGGCTCACCACGACGTAATCGGTTCGGATCTTCATGT 300
Query 326 TTACCCGGATCCAAATCCGGCTCCGTTACAACGTGCTCCTTCTCTTTTGGATCGGGTCAA 385
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 301 ATACCCTGATCCGAATCCGGCTCCGTTACAACGCGCTCCTTCTCTCTTGGATCGGGTCAA 360
Query 386 ATCTATCAACATGTCTTATTTCAAGTTCCCACACGACGTAACCGGGTCGGATCCTCACTC 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTATCAACATGTCTTATTTCAAGTTCCCACACGACGTAACCGGGTCGGATCCTCACTC 420
Query 446 CCACTCCCACTCCCACCTAGATTTACACCCGGATCCGGCTCCGGCACCGTTACAACGAGC 505
||||| || |||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 421 ACACTC----TC--ACCTAGATCCACACCCGGATCCGGCTCCGGCTCCGTTACAACGTGC 474
Query 506 TCCTTCTCTTCTGGATCGGGTCAAATCCATCAACATGTCATACTTCAAATTCCAGCAGTA 565
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 475 TCCTTCTCTTCTGGATCGGGTCAAATCCATCGACATGTCATACTTCAAATTCCAGCAGTA 534
Query 566 TAACCCGGAGGAGAATGATTATGCTCAT-CACACAGAACCGACCCGATTCGAAAGTATTC 624
|||||||||||| || || |||||| || |||| |||||||||||| ||||||| |||||
Sbjct 535 TAACCCGGAGGATAAAGACTATGCT-ATTCACAAAGAACCGACCCGTTTCGAAAATATTC 593
Query 625 CGACCCGGATGGGTCGGGTTGACCCGATTGATATCTCAAAATTCAGAATCCCGGAAGAAG 684
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 594 CGACCCGGAAGGGTCGGGTTGACCCGATTGATATCTCAAAATTCAGGATCCCGGAGGAAG 653
Query 685 ATCAACCAACCGGAACCGGAGTGAA-CAGTCAAATTAACCCGCCCGGTTTAACTCGAGCT 743
||||||| || ||||||||| | || || || |||| | || |||||||||||||| |||
Sbjct 654 ATCAACCGACTGGAACCGGAATCAATCA-TCCAATTGATCCACCCGGTTTAACTCGGGCT 712
Query 744 CCGTCTATCTTAGAACGGGTCAAATCCATTAAGCTATCCTCCTTCTACAGATCCGACCCG 803
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 713 CCGTCTATCTTAGAACGGGTCAAATCCATTAAGCTATCATCCTTTTACAGATCCGACCCG 772
Query 804 GATTTGGATCAAAAACAAAATCCGGATCCGGTTCTTCACGAGGAGCACAAGCATGTACGA 863
|| ||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
Sbjct 773 GAATTGGATCAAAA------TCCGGATCCGGTTCTTCACGAAGAGCACAAGCACGTAAGG 826
Query 864 AGCAAATCGGAATCGAAAAAACCGGTGAAGAAGAAGAAGAAAGCTTTAACGAAGATGACA 923
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 827 AGCAAATCGGAATCGAAAAAACCGGTGAAGAAAAAGAAGAAAGCTTCAACGAAGATGACG 886
Query 924 AAATCGGCTAGCGAGAAATCAGGTTTTGGTTTCGCAGGAAGCCATGCGGAAGC-GCCGGA 982
||||| || |||||||||||||||||||||||| | |||||||||| |||||| || | |
Sbjct 887 AAATCAGCGAGCGAGAAATCAGGTTTTGGTTTCACCGGAAGCCATGAGGAAGCAGCAG-A 945
Query 983 GACGGTGGAATCCCTCGAACGGAGAAGACCAGATACAACGAGAGTCGAAAGATCGACGTC 1042
||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 946 GACTGTGGAATCCGTCGAACGGAGAAGACCAGATACAACAAGAGTCGAGAGATCAACATC 1005
Query 1043 TTTCGGCGACGGCGAAGATGGCGTCGACGCGAAAGCTTCAGATTTCATCAACAAATTCAA 1102
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1006 GTTCGGCGACGGCGAAGATGGCGTCGACGCAAAAGCTTCAGATTTCATCAACAAATTCAA 1065
Query 1103 ACAGCAGCTGAAATTACAGAGACTCGATTCGATTCTGAGGTACAAGGAGATGCTTAAGGC 1162
||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1066 ACAACAGTTGAAACTACAGAGACTCGATTCGATTCTGAGGTACAAGGAGATGCTCAAAGC 1125
Query 1163 CCATTGAAGCCGTCTCCGTCGCCGGT 1188
| ||||| |||||||||||||| |||
Sbjct 1126 CAATTGACGCCGTCTCCGTCGC-GGT 1150
Score = 215 bits (116), Expect = 9e-55
Identities = 158/177 (89%), Gaps = 8/177 (5%)
Strand=Plus/Plus
Query 1387 TGC-TTAGCGAAGTATGTGTGGCGTTAAAATTGGATCTAGGACGTTGTTTTGCGTCTTAA 1445
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1284 TGCATTAGCGAAGTATGTGTGGCGTTAAAATTGGATCTGGGACGTTGTTTTGCGTCTGAA 1343
Query 1446 TTCTA-ATGAT----CATTCATTCACTTGGCAATTTTTTCGAGATGTTTGGTACACGTTT 1500
|| || || || |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1344 TTATATATAATGTTACATTCATTCACTTGGCTATTTTTTCGAGATGTTTAGTACACGTTT 1403
Query 1501 CCTATTTTCTGCCCTATTTTCAGGTTGGTTTATTCTAT-TTATTTAAAATTTTCTAG 1556
|||| ||||||||||||||||||||| |||||| ||| ||||| ||| ||||||||
Sbjct 1404 CCTAGATTCTGCCCTATTTTCAGGTTGTTTTATTTTATCTTATT-AAACTTTTCTAG 1459
Score = 154 bits (83), Expect = 2e-36
Identities = 120/137 (88%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 1218 TCGCGGTTTTGTTTGCCGCCGTTTTTCAC---GTAG-GAG-ACAGGAGTGGACATTATCT 1272
||||||||||||||||||||||||||||| | || ||| |||||||| || | | |||
Sbjct 1144 TCGCGGTTTTGTTTGCCGCCGTTTTTCACAGAGGAGAGAGTACAGGAGTAGAGAATGTCT 1203
Query 1273 GAATTACCGATAATATCCCTGTATGTTTGAGGATATTTAAGTAATTTATTAATTAGTTAA 1332
|||||||||||| | ||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 1204 GAATTACCGATAGTGCCCCTGTATG-TTGAGGATATTTAAGTAATTTATCAATTTGTTAA 1262
Query 1333 TGTGAATTTGTTATTGT 1349
||||||||| |||||||
Sbjct 1263 TGTGAATTTATTATTGT 1279
Score = 111 bits (60), Expect = 1e-23
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 328 ACCCGGATCCAAATCCGGCTCCGTTACAACGTGCTCCTTCTCTTTTGGATCGGGTCAAAT 387
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 441 ACCCGGATCCGGCTCCGGCTCCGTTACAACGTGCTCCTTCTCTTCTGGATCGGGTCAAAT 500
Query 388 CTATCAACATGTCTTATTTCAAGTTCC 414
| ||| ||||||| || ||||| ||||
Sbjct 501 CCATCGACATGTCATACTTCAAATTCC 527
> Ahg495787 jgi|Araly1|495787|fgenesh2_kg.8__1603__AT5G56980.1
Length=1480
Score = 1598 bits (865), Expect = 0.0
Identities = 1069/1166 (92%), Gaps = 19/1166 (2%)
Strand=Plus/Plus
Query 26 AAAAATGGAGTTACTAACGACGGTCGCGAGCTTTTTCACTCCGACGACTCTTTTCCTCCT 85
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAAAATGGAGTTACTAACGACCGTCGCGAGCTTTTTCACTCCGACGACTCTCTTCCTCCT 60
Query 86 TCTTAATCTTATGATCGGTACAATCGTCGTAACCTCTCGACTCGGGTCAGGTTCAAGAAA 145
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TCTCAATCTTATGATCGGCACAATCGTCGTAACCTCTCGACTCGGGTCGGGTTCAAGAAA 120
Query 146 ACATTACCAGCATCACGATGGATTCGGGTCAGGTCATGCTCCGGCTCCGTTAGCTAGAGC 205
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 121 ACATTACCAGCATCACGATGGGTTCGGGTCGGGTCATGCGCCGGCTCCGTTAGCTAGAGC 180
Query 206 TCCATCGATTATCGACCGAGTCAAGTCCATCAATTTTCATCTCTACAAATTTCCTCATCC 265
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCGTCGCTTATCGACCGAGTCAAGTCCATCAATTTTCATCTCTACAAATTTCCTCATCC 240
Query 266 AGAAACTGAGCTTTTCTCGATGACAGCTCACCACGACATAATCGGGTCGGATCTTCATGT 325
||||| |||||||| |||||||| |||||||| ||| ||||||| ||||||||||||||
Sbjct 241 TGAAACAGAGCTTTTTTCGATGACGGCTCACCATGACGTAATCGGTTCGGATCTTCATGT 300
Query 326 TTACCCGGATCCAAATCCGGCTCCGTTACAACGTGCTCCTTCTCTTTTGGATCGGGTCAA 385
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 301 ATACCCGGATCCGAATCCGGCTCCGTTACAACGCGCTCCTTCTCTCTTGGATCGGGTCAA 360
Query 386 ATCTATCAACATGTCTTATTTCAAGTTCCCACACGACGTAACCGGGTCGGATCCTCACTC 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTATCAACATGTCTTATTTCAAGTTCCCACACGACGTAACCGGGTCGGATCCTCACTC 420
Query 446 CCACTCCCACTCCCACCTAGATTTACACCCGGATCCGGCTCCGGCACCGTTACAACGAGC 505
||||| || |||||||| ||||||||||||| |||| |||| ||||||||| ||
Sbjct 421 ACACTC----TC--ACCTAGATCCACACCCGGATCCGACTCCAGCACAGTTACAACGTGC 474
Query 506 TCCTTCTCTTCTGGATCGGGTCAAATCCATCAACATGTCATACTTCAAATTCCAGCAGTA 565
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 475 TCCTTCTCTTCTGGATCGGGTCAAATCCATCGACATGTCATACTTCAAATTCCAGCAGTA 534
Query 566 TAACCCGGAGGAGAATGATTATGCTCAT-CACACAGAACCGACCCGATTCGAAAGTATTC 624
|||||||||||| || || |||||| || |||| |||||||||||| ||||||| |||||
Sbjct 535 TAACCCGGAGGATAAAGACTATGCT-ATTCACAAAGAACCGACCCGTTTCGAAAATATTC 593
Query 625 CGACCCGGATGGGTCGGGTTGACCCGATTGATATCTCAAAATTCAGAATCCCGGAAGAAG 684
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 594 CGACCCGGAAGGGTCGGGTTGACCCGATTGATATCTCAAAATTCAGGATCCCGGAGGAAG 653
Query 685 ATCAACCAACCGGAACCGGAGTGAA-CAGTCAAATTAACCCGCCCGGTTTAACTCGAGCT 743
||||||| || ||||||||| | || || || |||| | || |||||||||||||| |||
Sbjct 654 ATCAACCGACTGGAACCGGAATCAATCA-TCCAATTGATCCACCCGGTTTAACTCGGGCT 712
Query 744 CCGTCTATCTTAGAACGGGTCAAATCCATTAAGCTATCCTCCTTCTACAGATCCGACCCG 803
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 713 CCGTCTATCTTAGAACGGGTCAAATCCATTAAGCTATCATCCTTTTACAGATCCGACCCG 772
Query 804 GATTTGGATCAAAAACAAAATCCGGATCCGGTTCTTCACGAGGAGCACAAGCATGTACGA 863
|| ||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
Sbjct 773 GAATTGGATCAAAA------TCCGGATCCGGTTCTTCACGAAGAGCACAAGCACGTAAGG 826
Query 864 AGCAAATCGGAATCGAAAAAACCGGTGAAGAAGAAGAAGAAAGCTTTAACGAAGATGACA 923
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 827 AGCAAATCGGAATCGAAAAAACCGGTGAAGAAAAAGAAGAAAGCTTCAACGAAGATGACG 886
Query 924 AAATCGGCTAGCGAGAAATCAGGTTTTGGTTTCGCAGGAAGCCATGCGGAAGC-GCCGGA 982
||||| || |||||||||||||||||||||||| | |||||||||| |||||| || | |
Sbjct 887 AAATCAGCGAGCGAGAAATCAGGTTTTGGTTTCACCGGAAGCCATGAGGAAGCAGCAG-A 945
Query 983 GACGGTGGAATCCCTCGAACGGAGAAGACCAGATACAACGAGAGTCGAAAGATCGACGTC 1042
||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 946 GACTGTGGAATCCGTCGAACGGAGAAGACCAGATACAACAAGAGTCGAGAGATCAACATC 1005
Query 1043 TTTCGGCGACGGCGAAGATGGCGTCGACGCGAAAGCTTCAGATTTCATCAACAAATTCAA 1102
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1006 GTTCGGCGACGGCGAAGATGGCGTCGACGCAAAAGCTTCAGATTTCATCAACAAATTCAA 1065
Query 1103 ACAGCAGCTGAAATTACAGAGACTCGATTCGATTCTGAGGTACAAGGAGATGCTTAAGGC 1162
||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1066 ACAACAGTTGAAACTACAGAGACTCGATTCGATTCTGAGGTACAAGGAGATGCTCAAAGC 1125
Query 1163 CCATTGAAGCCGTCTCCGTCGCCGGT 1188
| ||||| |||||||||||||| |||
Sbjct 1126 CAATTGACGCCGTCTCCGTCGC-GGT 1150
Score = 215 bits (116), Expect = 9e-55
Identities = 161/181 (89%), Gaps = 9/181 (5%)
Strand=Plus/Plus
Query 1383 TAGTTGC-TTAGCGAAGTATGTGTGGCGTTAAAATTGGATCTAGGACGTTGTTTTGCGTC 1441
||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1281 TAGTT-CATTAGCGAAGTATGTGTGGCGTTAAAATTGGATCTGGGACGTTGTTTTGCGTC 1339
Query 1442 TTAATTCTA-ATGAT----CATTCATTCACTTGGCAATTTTTTCGAGATGTTTGGTACAC 1496
| |||| || || || |||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1340 TGAATTATATATAATGTTACATTCATTCACTTGGCTATTTTTTCGAGATGTTTAGTACAC 1399
Query 1497 GTTTCCTATTTTCTGCCCTATTTTCAGGTTGGTTTATTCTAT-TTATTTAAAATTTTCTA 1555
|||||||| ||||||||||||||||||||| |||||| ||| ||||| ||| |||||||
Sbjct 1400 GTTTCCTAGATTCTGCCCTATTTTCAGGTTGTTTTATTTTATCTTATT-AAACTTTTCTA 1458
Query 1556 G 1556
|
Sbjct 1459 G 1459
Score = 176 bits (95), Expect = 4e-43
Identities = 130/146 (89%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 1218 TCGCGGTTTTGTTTGCCGCCGTTTTTCAC---GTAG-GAG-ACAGGAGTGGACATTATCT 1272
||||||||||||||||||||||||||||| | || ||| |||||||| || | | |||
Sbjct 1144 TCGCGGTTTTGTTTGCCGCCGTTTTTCACAGAGGAGAGAGTACAGGAGTAGAGAATGTCT 1203
Query 1273 GAATTACCGATAATATCCCTGTATGTTTGAGGATATTTAAGTAATTTATTAATTAGTTAA 1332
|||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1204 GAATTACCGATAGTGCCCCTGTATG-TTGAGGATATTTAAGTAATTTATCAATTAGTTAA 1262
Query 1333 TGTGAATTTGTTATTGTTTAGTTCAT 1358
||||||||| ||||||||||||||||
Sbjct 1263 TGTGAATTTATTATTGTTTAGTTCAT 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5