BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G56990.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357916 jgi|Araly1|357916|fgenesh1_pg.C_scaffold_8001703 763 0.0
Ahg950373 jgi|Araly1|950373|scaffold_802260.1 634 0.0
> Ahg357916 jgi|Araly1|357916|fgenesh1_pg.C_scaffold_8001703
Length=705
Score = 763 bits (413), Expect = 0.0
Identities = 617/711 (87%), Gaps = 32/711 (5%)
Strand=Plus/Plus
Query 1 ATGGCCGGTTCGT-TGTCGACGGGGGATTTTCACATTCGGAAGAAGCCGAGGTTGGAGAA 59
||| ||| ||| | ||| ||||| | || | |||| || |||||||||||||||||| ||
Sbjct 1 ATGTCCGATTC-TGTGTTGACGGAGTATATGCACACTCCGAAGAAGCCGAGGTTGGAAAA 59
Query 60 ATTCTCCAGCGAATC-AAGTTACGGCTACACATTCCGAGAACTCCGG-AGATACGACCCT 117
|| |||| | ||||| || || || || |||| | | |||||||| || ||||| ||
Sbjct 60 ATCCTCCGGAGAATCGAA-TTCCGCCTCCACACGCAAACAACTCCGGAAG-TACGATCCG 117
Query 118 TACGACGATGAATACGTACGACAGTACATCTTATACTAC---CAGTACCATAAGAGCGAG 174
||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 118 TACGACGATGAATACATACGACAGTACATCTTATACTACTATCAGTTCCATAAGAGCGAG 177
Query 175 GGTTTCGTGATTGATTGGGATAAATTGGATTTTCGGTTCGAGACTAGGCCTATCATGGAT 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGTTTCGTGATTGATTGGGATAAATTGGATTTTCGGTTCGAGACTAGGCCTATCATGGAC 237
Query 235 CCAT-TCCGTCTTGATG-TGTGCAGTACCAATGATGAAATGATCCATGGCGTGGCTCT-C 291
|||| | ||| | | || | | |||||||||||||||| | |||| ||| |||||| | |
Sbjct 238 CCATAT-CGTATAGCTGCT-TACAGTACCAATGATGAATTAATCCGTGGTGTGGCT-TGC 294
Query 292 CGTGCTATT-----ACAC-----A-ACACA---A-TGT-T-TGATACGGGAAGTCGGATT 334
||||| ||| |||| | | ||| | ||| | | | ||||||||||||||
Sbjct 295 CGTGCCATTGCCCAACACAATGTAGATACAGTTAGTGTGTCTTCTTCGGGAAGTCGGATT 354
Query 335 GAGTTGGTCGATCACGTGTCGGCAAGTTACAGGTGGTGTGCTGGTATACTTTATTGGGTA 394
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GAGTTCGTCGATCATGTTTCGGCAAGTTACAGGTGGTGTGCTGGTATACTTTATTGGGTA 414
Query 395 ACGTTTTTGGCTCGGGATTTGGCCTCATCCGATCCCGAGCCTAGACTTTATCAAGCTAAA 454
||||||| ||||||||||||||| |||||| |||| ||||||| |||||||||||||||
Sbjct 415 ACGTTTTGGGCTCGGGATTTGGCATCATCCAATCCTGAGCCTAAACTTTATCAAGCTAAT 474
Query 455 GTTCGTCTCTGTGGACCAACGTTCTGTCAGATTTATATCTTCAGGCTCAGACCAACTGAT 514
||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 475 GTTCGCCTCTGTGGACCAACGTTCTGTGAGATTTATATCTTCAGGCTCAAACCAACTGAT 534
Query 515 GAAGAGATTGCTGCAGTTCAAGTGGATCCCCCTCCTCCATTGTATGATGATGACCCAGAG 574
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 535 GAAGAGATTGCTGCTGTTCAAGTGGATCCTCCTCCTCCATTGTATGATGATGACCCAGAG 594
Query 575 TTACCCACCATACTTTTCACTGTGACTGGTCCAGGATCGGGTTACATGTCTATACCCGAA 634
||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||
Sbjct 595 TTACCCACCATACTTTTCACTGTAACGGGTCCAGGATCTGGTTACATGTCCATACCTGAA 654
Query 635 GTTTTCTTCACTCGGATTCCTGCAGAAGTTGAGCCCGTGTCGTCACCATAA 685
|||| ||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 655 GTTTCCTTCACTCGAATTCCTGCTGAAGTTGAGCCTGTGTCGTCACCATAA 705
> Ahg950373 jgi|Araly1|950373|scaffold_802260.1
Length=741
Score = 634 bits (343), Expect = 0.0
Identities = 579/690 (84%), Gaps = 27/690 (4%)
Strand=Plus/Plus
Query 39 GAAGAAGCCGAGGTTGGAGAAATTCTCCAGCGAATCAAGTTACGGCTACACATTCCG-AG 97
||||||||||| |||||| ||| |||| | ||||| |||| ||||| ||||| ||| |
Sbjct 60 GAAGAAGCCGAAGTTGGACAAAGCCTCCGGAGAATCGAGTTCCGGCTCCACATACCGCA- 118
Query 98 AACTCCGGAGATACGACCCTTACGACGATGAATACGTACGACAGTACATCTTATACTAC- 156
||||||||| |||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct 119 AACTCCGGAAATACGATCCGTACGACGATGAATACATACGACAGTACATCTTATACTACT 178
Query 157 --CAGTACCATAAGAGCGAGGGTTTCGTGATTGATTGGGATAAATTGGATT-TTCGGTTC 213
|||| |||||||||||||||||||||||||||||||||||| || |||| || |||||
Sbjct 179 ATCAGTTCCATAAGAGCGAGGGTTTCGTGATTGATTGGGATAATTTCGATTATT-GGTTC 237
Query 214 GAG-ACTAGGCCTATCATGGATCCAT-TCCGTCT-TGATGTGTGCAGTACCAATGATGAA 270
|| | || ||| |||| || |||| ||| ||| | | || ||| ||||||| ||||
Sbjct 238 -AGTAATATACCTGTCATAGAGCCATATCC-TCTCTC-TCAGTACAGGACCAATGCTGAA 294
Query 271 ATGATCCATGGCGTGGCTCTCCG-TGCTATTA-CACAACACAATGTTTGATACGGGAAGT 328
| |||| || |||| | | || ||| |||| | |||||||||| |||||||||| |
Sbjct 295 GTAATCCGTGATGTGGTT-TGCGGTGCCATTAGC-CAACACAATGCA-GATACGGGAACT 351
Query 329 CGGATTGAGTTGGTCGATCACGTGTCGGCAAGTTACAGGTGGTGTGCTGGTATACTTTAT 388
|| ||| ||| ||||||||||| |||||||||||||| | ||||||||||| |||| |
Sbjct 352 AGGCTTGTGTTTGTCGATCACGTTTCGGCAAGTTACAGATTTTGTGCTGGTATGCTTTTT 411
Query 389 TGGGTAACGTTTTTGGCTCGGGATTTGGCCTCATCC-GATCCCGAGCCTAGACTTTATCA 447
||| |||| |||| |||| |||||||||| |||||| | ||||||||||| |||||||||
Sbjct 412 TGGATAACATTTTGGGCTAGGGATTTGGCATCATCCAG-TCCCGAGCCTAAACTTTATCA 470
Query 448 AGCTAAAGTTCGTCTC-TGTGGACCAAC-GTTCTGTCAGATTTATATCTTCAGGCTCAGA 505
| |||| |||| ||| |||||||||| || ||| ||||| | |||||||||| || |
Sbjct 471 AACTAATGTTC-TCTGGTGTGGACCAAAAGTA-TGTGAGATTCAGATCTTCAGGCCCAAA 528
Query 506 CCAACTGATGAAGAGATTGCTGCAGTTCAAGTGGATCCCCCTCCTCCATTGTATGATGAT 565
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 529 CCAACTGATGAAGAGATTGCTGCTGTTCAAGTGGATCCTCCTCCTCCATTGTATGATGAT 588
Query 566 GACCCAGAGTTACCCACCATACTT-TTCACTGTGACTGGTCCAGGATCGGGTTACATGTC 624
| ||||||||||||||||||| || ||||| || || |||||||| || |||||||||||
Sbjct 589 GTCCCAGAGTTACCCACCATA-TTGTTCACCGTAACGGGTCCAGGGTCTGGTTACATGTC 647
Query 625 TATACCCGAAGTTTTCTTCACTCGGATTCCTGCAGAAGTTGAGCCCGTGTCGTCACCATA 684
||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||| || |
Sbjct 648 CATACCCGAAGTTTCCTTCACTCGGATTCCTGCTGAAGTTGAGCCCGCGTCTTCATCAAA 707
Query 685 ATCCTCACCGTGAAAACAAAAACTC-AAAT 713
|||| |||||||||||| ||||| | ||||
Sbjct 708 ATCCACACCGTGAAAACCAAAACGCTAAAT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5