BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57000.1

Length=829
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495790 jgi|Araly1|495790|fgenesh2_kg.8__1606__AT5G57000.2         627    5e-179


> Ahg495790 jgi|Araly1|495790|fgenesh2_kg.8__1606__AT5G57000.2
Length=586

 Score =  627 bits (339),  Expect = 5e-179
 Identities = 411/446 (92%), Gaps = 4/446 (1%)
 Strand=Plus/Plus

Query  124  ATTCTCGTCTAAAGCAAGACGAAGATGACGACTGCTGTCAACACAGTTTCTGGTGATGAA  183
            |||| | || ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct  12   ATTC-CATCGAAAGCAAGAAGAAGATGACGACTGGTGTCAACACAGTTTCTGGTGATGAA  70

Query  184  GATCGTTCGGACAAAAAGATTCAGGGTGATATTGATGAGAGTAAGGTCAAAGCACCAAAC  243
            |||||||||||||| |||||||| | ||| ||||||||||| || |||||||| ||||||
Sbjct  71   GATCGTTCGGACAAGAAGATTCATGCTGACATTGATGAGAGCAAAGTCAAAGCGCCAAAC  130

Query  244  ATGTTCGAACGAGCTAAAGAAGAGCTTGATGCTGTTATCGGAGCTATTCATCAACGCAAG  303
            ||||| |||||||| ||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct  131  ATGTTTGAACGAGCAAAAGAAGAGTTTGATGCTGTTGTTGGAGCTATTCATCAACGCAAG  190

Query  304  AGTTCAAAGGATAAAATGGAATTCAAATCAGATAAACCAGAAGATGGAAAGAAAAAACCG  363
            |||||||||||||||||||||| ||||||||| |||||   |||||||||||||||||||
Sbjct  191  AGTTCAAAGGATAAAATGGAATCCAAATCAGAGAAACC---AGATGGAAAGAAAAAACCG  247

Query  364  AATATGTTGAAAAAGGCGAGGGAAGACCTCAAATCTTTATTCCTGAAGGAAAAACCTCCT  423
            |||||| | |||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct  248  AATATGATCAAAAAGGCGAGGGAAGACCTCAAATCTTTATTTCAGAAGGAGAAACCTCCT  307

Query  424  CGCCATCTTCATCATCATCACAAAGAAACTCATGGAAGGAGTGATGATATCAGTGAGAAC  483
            ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  308  CGCCATCATCATCATCATCACAAAGAAACTCATGGAAGGAGTGATGATATCAATGAGAAC  367

Query  484  ACACCGGTGGATGAAGTGAAGGCTCCTAATGTTTTGGAGAGAGCCAAGGAAGAAATCGAA  543
            || || || |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  368  ACTCCAGTTGATGAAGTGAAGGCTCCTAATGTTTTGGAGAGAGCCAAGGAAGAAATCGAG  427

Query  544  GCCGTCATCGACACCATCCATTCCAA  569
            ||||||||||| ||||||||| ||||
Sbjct  428  GCCGTCATCGATACCATCCATCCCAA  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30650825268


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5