BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57015.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950376 jgi|Araly1|950376|scaffold_802263.1 2237 0.0
Ahg492204 jgi|Araly1|492204|fgenesh2_kg.7__1637__AT4G26100.1 1136 0.0
> Ahg950376 jgi|Araly1|950376|scaffold_802263.1
Length=1349
Score = 2237 bits (1211), Expect = 0.0
Identities = 1301/1346 (97%), Gaps = 0/1346 (0%)
Strand=Plus/Plus
Query 391 TTTCTGAATTGGTGATTATCGATGGAGCCTCGTGTGGGAAACAAATATCGTCTCGGCCGG 450
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1 TTTCTGAATTGGTTATTATCGATGGAGCCTCGTGTGGGAAACAAATATCGTCTTGGCAGG 60
Query 451 AAAATTGGAAGCGGTTCATTTGGAGAGATCTATCTTGGTACTCATATTCAAACGAATGAA 510
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGATTGGAAGTGGTTCATTTGGAGAGATCTATCTTGGTACTCATATTCAAACGAATGAA 120
Query 511 GAAGTTGCAATCAAGCTTGAAAATGTGAAGACGAAACATCCTCAGCTGCTCTATGAATCC 570
||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 121 GAAGTTGCAATCAAGCTTGAAAATGTGAAAACTAAACATCCGCAGCTGCTCTATGAATCG 180
Query 571 AAGTTATACAGAATTCTACAGGGAGGAACTGGTGTTCCAAATATCAAGTGGTTTGGTGTT 630
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AAGTTATACAGAATTCTACAGGGAGGAACTGGTGTTCCAAATGTCAAGTGGTTTGGTGTT 240
Query 631 GAAGGTGACTACAATACTCTGGTGATGGATTTACTTGGGCCTAGTCTTGAAGACTTGTTC 690
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGGTGACTACAATGTTCTGGTGATGGATTTACTTGGGCCTAGTCTTGAAGACTTGTTC 300
Query 691 AATTTCTGTAGCAGGAAACTTTCCTTGAAGTCTGTCCTCATGCTCGCAGATCAAATGATC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTTCTGTAGCAGGAAACTTTCCTTGAAGTCTGTCCTCATGCTCGCAGATCAAATGATC 360
Query 751 AACCGTGTTGAGTATTTCCATTCGAAATCTTTCCTTCACCGAGATCTTAAGCCAGACAAT 810
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AACCGTGTTGAGTATTTCCATTCGAAATCTTTCCTTCATCGAGATCTTAAGCCAGACAAT 420
Query 811 TTTCTTATGGGTTTAGGAAGGCGCGCAAACCAGGTACACATCATCGACTTTGGTCTTGCA 870
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TTTCTCATGGGTTTAGGAAGGCGCGCAAACCAGGTATACATCATCGACTTTGGTCTTGCA 480
Query 871 AAGAAATACCGGGATAATACTACCCACCAGCACATTCCCTACAGAGAAAATAAGAATCTG 930
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AAGAAATACCGGGATAATACTACCCATCAGCACATTCCCTACAGAGAAAATAAGAATCTG 540
Query 931 ACTGGAACTGCAAGATATGCTAGTATGAACACTCACTTGGGAATTGAGCAAAGCCGAAGG 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTGGAACTGCAAGATATGCTAGTATGAACACTCACTTGGGAATTGAGCAAAGCCGAAGG 600
Query 991 GATGACCTAGAATCTCTTGGTTACATTCTCATGTATTTCCTTAAAGGAAGTCTTCCATGG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATGACCTAGAATCTCTTGGTTACATTCTCATGTATTTCCTTAAAGGAAGTCTTCCATGG 660
Query 1051 CAAGGACTTAAAGCTGGAACCAAGAAACAAAAGTATGAGAGAATCAGTGAAAAGAAAGTC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAAGGACTTAAAGCTGGAACCAAGAAACAAAAGTATGAGAGAATCAGTGAAAAGAAAGTC 720
Query 1111 TCTACATCAATTGAGTCCTTGTGCCGTGGTTACCCATCCGAATTCGCATCGTACTTCCAC 1170
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 721 TCTACATCAATTGAGTCCTTGTGCCGTGGTTACCCATCTGAATTCGCATCTTACTTCCAC 780
Query 1171 TACTGCCGATCGCTTCGGTTTGATGATAAACCAGATTACGGTTACCTCAAAAGAATATTC 1230
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACTGCCGTTCGCTCCGGTTTGATGATAAACCAGATTACGGTTACCTCAAAAGAATATTC 840
Query 1231 CGGGACCTCTTTATCCGCGAAGGGTTTCAATTCGATTATGTCTTTGACTGGACCATATTG 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CGGGACCTCTTTATCCGCGAAGGGTTTCAATTCGATTATGTCTTTGACTGGACCATATTG 900
Query 1291 AAATATCAACAGTCACAGCTAACCGCTCCTCCATCCCGTGGCCTAGTAAGTCCTGCGGTT 1350
||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||
Sbjct 901 AAATATCAACAGTCACAGCTAACGGCTCCTCCATCCCGTGGCTTAGTAAGTCCCGCAGTT 960
Query 1351 GGAACCAGTGCGGGTTTGCCTCCCGGACTAACCAGCATCGATAGATACGGAGGCGAGGAA 1410
||||||||| |||||||||||||||||||||||||| | |||||||| | |||||||||
Sbjct 961 GGAACCAGTTCGGGTTTGCCTCCCGGACTAACCAGCGTTGATAGATATGCAGGCGAGGAC 1020
Query 1411 GAAGGAGGAAGACCACCAATGGATTCGTCACGAAGGAGAATGTCAGGAGCTCTTGAAAAC 1470
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 GAAGGAGGGAGACCACCAATGGATTCATCACGAAGGAGAATGTCAGGAGCTCTTGAAAAC 1080
Query 1471 TCTGGCAACTTGTCATCTAGAGGCCCAATGATGCCAAGCTCGTCACTGTTTGCACAATCA 1530
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1081 TCGGGCAACTTGTCATCTAGAGGCCCAATGATGCCAAGCTCGTCGCTGTTCGCACAATCA 1140
Query 1531 GCAGGATCATCGAGGAGAGTAACGTCAGAGGAGCTACAGAGATGCCGAACCGGCGCCGGT 1590
||||||||||| ||||||||||| || |||||||||||||||||||| || ||||||||
Sbjct 1141 GCAGGATCATCAAGGAGAGTAACATCCGAGGAGCTACAGAGATGCCGTACAGGCGCCGGA 1200
Query 1591 TTAAGAAACTCTCCGGTAGTTACAACGCCGGAAGGGAAGAGATCTTCTTCCACCAGAAAA 1650
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTAAGAAACTCTCCGGCGGTTACAACGCCGGAAGGGAAGAGATCTTCTTCCACCAGAAAA 1260
Query 1651 CATTACGATTCTGCTATCAAAGGCATTGAGACTCTCCAAGTCTCCGACGAAAGGTTTCAC 1710
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CATTACGATTCTGCCATCAAAGGCATTGAGACTCTCCAAGTCTCCGACGAAAGGTTTCAC 1320
Query 1711 CACCACTGATACATCATCCATCCATC 1736
|||||||||| |||||||||||||||
Sbjct 1321 CACCACTGATCCATCATCCATCCATC 1346
> Ahg492204 jgi|Araly1|492204|fgenesh2_kg.7__1637__AT4G26100.1
Length=1672
Score = 1136 bits (615), Expect = 0.0
Identities = 929/1080 (86%), Gaps = 24/1080 (2%)
Strand=Plus/Plus
Query 402 GTGATTATCGATGGAGCCTCGTG-TGGGAAACAAATATCGTCTCGGCCGGAAA-ATTGGA 459
||| |||| |||||| ||||||| |||| ||||| | ||| ||||| | |||| || ||
Sbjct 190 GTGGTTATTGATGGAACCTCGTGTTGGG-AACAAGTTTCGGCTCGGAC-GAAAGATCGGT 247
Query 460 AGCGGTTCATTTGGAGAGATCTATCTTGGTACTCATATTCAAACGAATGAAGAAGTTGCA 519
|| ||||| ||||| ||||||||||| |||||| ||||||| |||||||||||||| ||
Sbjct 248 AGTGGTTCGTTTGGGGAGATCTATCTCGGTACTAATATTCATACGAATGAAGAAGTGGCT 307
Query 520 ATCAAGCTTGAAAATGTGAAGACGAAACATCCTCAGCTGCTCTATGAATCCAAGTTATAC 579
|| |||||||||| ||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct 308 ATTAAGCTTGAAAGTGTGAAGACAAAACATCCGCAGCTGCTCTATGAATCAAAGTTGTAC 367
Query 580 AGAATTCTAC-AGGGAGGAACTGGTGTTCCAAATATCAAGTGGTTTGGTGTTGAAGGTGA 638
|| ||||||| |||| |||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 368 AGGATTCTACAAGGG-GGAACTGGTGTTCCAAATGTCAAATGGTTTGGTGTTGAAGGGGA 426
Query 639 CTACAATACTCTGGTGATGGATTTACTTGGGCCTAGTCTTGAAGACT-TGTTCAATTTCT 697
||| ||| | |||| ||||||||||| || || ||||||||||| | | |||||||| |
Sbjct 427 CTATAATGTTTTGGTCATGGATTTACTCGGACCAAGTCTTGAAGA-TCTCTTCAATTTTT 485
Query 698 GTAGCAGGAAACTTTCCTTGAAGTCTGTCCTCATGCTCGCAGATCAAATGATCAACCGTG 757
||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 486 GTAGCAGGAAACTTTCCTTGAAGTCAGTCCTCATGCTTGCTGATCAAATGATCAACCGTG 545
Query 758 TTGAGTATTTCCATTCGAAATCTTTCCTTCACCGAGATCTTAAGCCAGACAATTTTCTTA 817
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || |
Sbjct 546 TTGAGTATTTTCATTCAAAATCTTTCCTTCACCGAGATCTCAAGCCAGACAATTTCCTAA 605
Query 818 TGGG-TTTAGGAAGGCGCGCAAACCAGGTACACATCATCGACTTTGGTCTTGCAAAGAAA 876
|||| || |||||||| |||||||||||| ||||||| |||||||||||||| |||||
Sbjct 606 TGGGCCTT-GGAAGGCGTGCAAACCAGGTATACATCATTGACTTTGGTCTTGCTAAGAAG 664
Query 877 TACCGGGATAATACTACCCACCAGCACATTCCCTACAGAGAAAATAAGAATCTGACTGGA 936
||| |||||| ||| || || ||||||||||||||||| ||||||||||| ||||| |||
Sbjct 665 TACAGGGATAGTACAACACATCAGCACATTCCCTACAGGGAAAATAAGAACCTGACAGGA 724
Query 937 ACTGCAAGATATGCTAGTATGAACACTCACTTGGGAATTGAGCAAAGCCGAAGGGATGAC 996
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 725 ACTGCGAGATATGCTAGTATGAACACTCACTTGGGAATTGAACAAAGTCGAAGGGATGAT 784
Query 997 CTAGAATCTCTTGGTTACATTCTCATGTATTTCCTTAAAGGAAGTCTTCCATGGCAAGGA 1056
|| || |||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 785 CTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAAGGA 844
Query 1057 CTTAAAGCTGGAACCAAGAAA-CAAAAGTATGAGAGAATCAGTGAAAAGAAAGTCTCTAC 1115
|| |||||||||||||| ||| |||||||| || || || || ||||||||||| |||||
Sbjct 845 CTGAAAGCTGGAACCAA-AAAGCAAAAGTACGAAAGGATTAGCGAAAAGAAAGTTTCTAC 903
Query 1116 ATCAATTGAGTCCTTGTGCCGTGGTTACCCATCCGAATTCGCATCGTACTTCCACTACTG 1175
||| |||||| | || || ||||||||||| |||||||| ||||| || |||||||||||
Sbjct 904 ATCCATTGAGGCATTATGTCGTGGTTACCCGTCCGAATTTGCATCATATTTCCACTACTG 963
Query 1176 CCGATCGCTTCGGTTTGATGATAAACCAGATTACGGTTACCTCAAAAGAATATTCCGGGA 1235
|| ||||| || |||||||||||||||||||| | ||| |||||||||||||| || ||
Sbjct 964 TCGGTCGCTGCGTTTTGATGATAAACCAGATTATGCTTATCTCAAAAGAATATTTCGAGA 1023
Query 1236 CCTCTTTATCCGCGAAGGGTTTCAATTCGATTATGTCTTTGACTGGACCATATTGAAATA 1295
||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||| ||
Sbjct 1024 TCTCTTTATCCGTGAAGGGTTTCAATTTGATTATGTGTTTGACTGGACAATCTTGAAGTA 1083
Query 1296 TCAACAGTCACAGCTAACCGCTCCTCCATCCCGTGGCCTAGTAAGTCCTGCGGTTGGAAC 1355
|||||| ||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||
Sbjct 1084 TCAACAATCACAACTAACAGCTCCCCCATCTCGTGGCCTC--AA-TCCTGCTGTTGGAAC 1140
Query 1356 CAGTGCGG-GTTTGCCTCCCGG-ACTAACCAGCATCGATAGATACGGAGGCGAGGAAGAA 1413
|| || | ||| |||||| || | | ||| ||||||||||||| ||| |||||||||
Sbjct 1141 TAGCGCCGCGTT-GCCTCCGGGCATTT-CCAACATCGATAGATACACAGGGGAGGAAGAA 1198
Query 1414 GGAGGAAGACCACCA-ATGGATTCGTCACGAAGGAGAATGTCAGGAGCTCTTGAAAACTC 1472
|| | |||| | | ||||| || || ||| ||||| | ||||| |||||||| |||||
Sbjct 1199 GG-GC--GACCGC-ATATGGAATCATCTCGACGGAGAGTTTCAGGTGCTCTTGAGAACTC 1254
Score = 82.4 bits (44), Expect = 1e-14
Identities = 61/69 (88%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 1487 CTAGAGGC-CCAATGATGCCAAGCTCGTCACTGTTTGCACAATCAGCAGGATCATCGAGG 1545
|||||| | || ||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 1290 CTAGAGACTCC-ATGATCCCGAGCTCCTCGTTGTTTGCACAATCAGCAGGATCATCGAGG 1348
Query 1546 AGAGTAACG 1554
|||||||||
Sbjct 1349 AGAGTAACG 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5