BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57030.1
Length=1943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950378 jgi|Araly1|950378|scaffold_802265.1 2615 0.0
> Ahg950378 jgi|Araly1|950378|scaffold_802265.1
Length=1631
Score = 2615 bits (1416), Expect = 0.0
Identities = 1559/1626 (96%), Gaps = 17/1626 (1%)
Strand=Plus/Plus
Query 120 TTTGGAGGAGGAAAATGGAGTGTGTTGGGGCTAGGAATTTCGCAGCAATGGCGGTTTCAA 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 7 TTTGGAGGAGGAAAATGGAGTGTGTTGGGGCTCGGAATTTCGCAGCAATGGCGGTTTCAA 66
Query 180 CATTTCCGTCATGGAGTTGTCGAAGGAAATTTCCAGTGGTTAAGAGATACAGC-TATAGG 238
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||
Sbjct 67 CATTTCCGTCATGGAGTTCTCGAAGGAAATTTCCGGTGGTTAAGAGATACAGCGT-TAGG 125
Query 239 AATATTCGTTTCGGTTTGTGTAGTGTCAGAGCTAGCGGCGGCGGAAGTTCCGGTAGTGAG 298
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 126 AATATTCGTTTCGGTTTATGTAGTGTCAGAGCTAGCGGCGGCGGAAGCTCCGGTAGTGAG 185
Query 299 AGTTGTGTAGCGGTGAGAGAAGATTTCGCTGACGAAGAAGATTTTGTGAAAGCTGGTGGT 358
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 186 AGTTGTGTGGCGGTGAGAGAAGATTTCGCCGACGATGAAGATTTTGTGAAAGCTGGTGGT 245
Query 359 TCTGAGATTCTATTTGTTCAAATGCAGCAGAACAAAGATATGGATGAACAGTCTAAGCTT 418
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 246 TCCGAGATTCTATTCGTTCAAATGCAGCAAAACAAAGATATGGATGAACAGTCTAAGCTT 305
Query 419 GTTGATAAGTTGCCTCCTATATCAATTGGTGATGGTGCTTTGGATCTAGTGGTTATTGGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GTTGATAAGTTGCCTCCTATATCAATTGGTGATGGTGCTTTGGATCTAGTGGTTATTGGT 365
Query 479 TGTGGTCCTGCTGGTTTAGCCTTGGCTGCAGAATCAGCTAAGCTTGGATTAAAAGTTGGA 538
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 366 TGTGGTCCTGCTGGTTTAGCCTTGGCTGCAGAATCAGCTAAGCTTGGACTAAAAGTTGGA 425
Query 539 CTCATTGGTCCAGATCTTCCTTTTACTAACAATTACGGTGTTTGGGAAGATGAATTCAAT 598
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 426 CTCATTGGTCCAGATCTTCCTTTTACTAACAACTACGGTGTTTGGGAAGATGAATTCAAT 485
Query 599 GATCTTGGGCTGCAAAAATGTATTGAGCATGTTTGGAGAGAGACTATTGTGTATCTGGAT 658
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 486 GATCTTGGGCTGCAAAAATGTATTGAGCATGTTTGGAGAGATACTATTGTGTATCTGGAT 545
Query 659 GATGACAAGCCTATTACCATTGGCCGTGCTTATGGAAGAGTTAGTCGACGTTTGCTCCAT 718
||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 546 AATGACAATCCTATTACCATTGGCCGTGCTTATGGAAGAGTTAGTCGACGTTTACTTCAT 605
Query 719 GAGGAGCTTTTGAGGAGGTGTGTCGAGTCAGGTGTCTCGTACCTTAGCTCGAAAGTTGAC 778
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 606 GAGGAGCTTTTGAGGAGGTGTGTCGAGTCAGGTGTTTCGTATCTTAGCTCGAAAGTTGAC 665
Query 779 AGCATAACAGAAGCTTCTGATGGCCTTAGACTTGTTGCTTGTGACGACAATAACGTCATT 838
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 666 AGCATAACAGAAGCTTCTGATGGTCTTAGACTTGTTGCTTGTGACGACAATAACGTCATT 725
Query 839 CCCTGCAGGCTTGCCACTGTTGCTTCTGGAGCAGCTTCGGGAAAGCTCTTGCAATACGAA 898
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CCGTGCAGACTTGCCACTGTTGCTTCTGGAGCAGCTTCGGGAAAGCTCTTGCAATACGAA 785
Query 899 GTTGGTGGACCTAGAGTCTGTGTGCAAACTGCATACGGCGTGGAGGTTGAGGTGGAAAAT 958
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 786 GTTGGGGGACCTAGAGTCTGTGTCCAAACTGCATACGGCGTGGAGGTTGAGGTGGAAAAC 845
Query 959 AGTCCATATGATCCAGATCAAATGGTTTTCATGGATTACAGAGATTATACTAACGAGAAA 1018
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 846 AGTCCATATGATCCAGAGCAAATGGTTTTCATGGATTACAGAGATTATACGAATGAGAAA 905
Query 1019 GTTCGGAGCTTAGAAGCTGAGTATCCAACGTTTCTGTACGCCATGCCTATGACAAAGTCA 1078
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 906 GTTCGGAGCTTAGAAGCTGAGTATCCAACGTTTCTGTATGCCATGCCTATGACAAAGACA 965
Query 1079 AGACTCTTCTTCGAGGAGACATGTTTGGCCTCAAAAGATGTCATGCCCTTTGATTTGCTA 1138
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 966 AGACTATTCTTTGAGGAGACATGTTTAGCCTCAAAAGATGTCATGCCCTTTGATTTGCTA 1025
Query 1139 AAAACGAAGCTCATGTTAAGATTAGATACACTCGGAATTCGAATTCTAAAGACTTACGAA 1198
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1026 AAAAAGAAGCTCATGTTAAGATTAGATACACTAGGAATTCGAATTCTAAAGACTTACGAA 1085
Query 1199 GAGGAGTGGTCCTATATCCCAGTTGGTGGTTCCTTGCCAAACACCGAACAAAAGAATCTC 1258
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GAGGAATGGTCCTATATCCCAGTTGGTGGTTCCTTGCCAAACACCGAACAAAAGAATCTC 1145
Query 1259 GCCTTTGGTGCTGCCGCTAGCATGGTACATCCCGCAACAGGCTATTCAGTTGTGAGATCT 1318
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GCCTTTGGTGCTGCGGCTAGCATGGTACATCCCGCAACAGGCTATTCAGTTGTGAGATCT 1205
Query 1319 TTGTCTGAAGCTCCAAAATATGCATCAGTCATCGCAGAGATACTA-A----GAGA---AG 1370
|||||||||||||||||||||||||||||||| || ||||||||| | |||| ||
Sbjct 1206 TTGTCTGAAGCTCCAAAATATGCATCAGTCATAGCGGAGATACTAGAACAAGAGACTCAG 1265
Query 1371 AG-ACT------ACCAAACAGATCAACAGTAATATTTCAAGACAAGCTTGGGATACTTTA 1423
| ||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1266 ACTACTTCCTTCACCAAACAGATCAATAGTAATATTTCAAGACAAGCTTGGGATACTCTA 1325
Query 1424 TGGCCACCAGAAAGGAAAAGACAGAGAGCATTCTTTCTCTTTGGTCTTGCACTCATAGTT 1483
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1326 TGGCCACCAGAAAGGAAACGACAAAGAGCATTCTTTCTCTTTGGTCTTGCACTAATAGTT 1385
Query 1484 CAATTCGATACCGAAGGCATTAGAAGCTTCTTCCGTACTTTCTTCCGCCTTCCAAAATGG 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CAATTCGATACCGAAGGCATTAGAAGCTTCTTCCGTACTTTCTTCCGCCTTCCAAAATGG 1445
Query 1544 ATGTGGCAAGGGTTTCTAGGATCAACATTAACATCAGGAGATCTCGTTCTCTTTGCTTTA 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 ATGTGGCAAGGGTTTCTAGGATCAACATTAACATCAGGAGATCTCGTTCTCTTTGCTTTA 1505
Query 1604 TACATGTTCGTCATTTCACCAAACAATTTGAGAAAAGGTCTCATCAATCATCTCATCTCT 1663
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TACATGTTTGTCATCTCACCAAACAATTTGAGAAAAGGTCTCATCAATCATCTCATCTCT 1565
Query 1664 GATCCAACCGGAGCAACCATGATAAAAACCTATCTCAAAGTATGATTTACTTATCAACTC 1723
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1566 GATCCAACCGGAGCAACCATGATGAAAACCTATCTCAAAGTATGATTTTCTTATCAACTC 1625
Query 1724 TTAGGT 1729
||||||
Sbjct 1626 TTAGGT 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73018999665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5