BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57035.1
Length=2621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332000 jgi|Araly1|332000|fgenesh1_pm.C_scaffold_8001343 3659 0.0
> Ahg332000 jgi|Araly1|332000|fgenesh1_pm.C_scaffold_8001343
Length=2367
Score = 3659 bits (1981), Expect = 0.0
Identities = 2244/2373 (95%), Gaps = 9/2373 (0%)
Strand=Plus/Plus
Query 83 ATGGTGGTGATGACGAACAAATTCTTCGAATTAATCGGCGGAGCTCCGTCGTATTCTTCA 142
|||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||
Sbjct 1 ATGGTGGTGATGACGAACAAGTTCTTCGAATCAATCGGTGGAGCTCCGTCGTATACTTCA 60
Query 143 GTATCCGTCGCTGTTAAAGGATCCGTCGGTGACGCCGTAGGAGGAACTGCTAGTCGTCGT 202
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTTCCGTCGCCGTTAAAGGATCCGTCGGTGACGCCGTAGGAGGAACTGCTAGTCGTCGT 120
Query 203 GCTCTTCGTTGGACAATCGAAAATTTCCTTCCTAAAATCGATAGATTAGTTCTTGTTCAT 262
|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 GCTCTTCGTTGGACCATTGAAAATTTCCTTCCTAAAATCGATCGATTAGTTCTTGTTCAT 180
Query 263 GTCATGCCTACAGTTACTACTATTCCATCTCCTTCTGGATCGAAGATTCCAATAGAGGAA 322
||||||||||| || || | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GTCATGCCTACCGTCACAAGTATTCCATCTCCTTCTGGATCGAAGATTCCAGTAGAGGAA 240
Query 323 TTGGATGAGAGTGTTGTGTCTATGTATAAACGAGATTTGAGAAAAGAATTTGAACAAGTT 382
||||| |||||||||||||| ||||||||| |||||||||||||||||| |||||| |||
Sbjct 241 TTGGAAGAGAGTGTTGTGTCGATGTATAAAAGAGATTTGAGAAAAGAATATGAACAGGTT 300
Query 383 TTTGTTCCGTTTAAGAGGATCTGCAAATCCAACAAAGTTGAGACTTTGTTGTTGGAACAT 442
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TTTGTTCCGTTTAAGAGGATCTGCAAATCAAACAAAGTTGAGACTTTGTTGTTGGAACAT 360
Query 443 CATGATCCTGCAAAGGCTCTTTTGAAGTATATGTCAGATACTGATGTTGAGTGTTTAGTG 502
||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||
Sbjct 361 CATGATCCTGCAAAGGCACTTTTGAAGTATATGTTAGATTCTGAGGTTGAGTGTTTAGTG 420
Query 503 ATTGGCTCTTGCTCTTCTAATTTCCTCACAAGGAAAAAAGGACAAGAAATGCCATTAACG 562
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 ATTGGCTCTTGCTCTTCAAATTTCCTCACAAGGAAAAAGGGACAAGAAATGCCATTAACG 480
Query 563 GTGCTAGGAGAAGCTCCAGAGACATGTGAGATATATGTTGTTTGTAAAGATAGAATCTTA 622
|| ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 481 GTACTAGGAGAAGCTCCAGAGACATGTGAGATCTTTGTTGTTTGCAAAGATAGAATCTTA 540
Query 623 ACCAAATCGACGAATCAGTTTACCGCAGATTCATCATCTAGTTTCCGTATACCAGAAGGA 682
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 541 ACCAAATCGACCAATCAGTTTACCGCAGATTCATCTTCTAGTTTCCGTATACCCGAAGGA 600
Query 683 GCTGAAGCTTATACAGAATCTTTCAGTCGCACACGCTCTGATAAGACAGGGTTGTCTGCT 742
|||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 601 GCTGAAGCTTATACTGAATCTTTCAGTCGCTCACGCTCTGAGAAGACGGGGTTGTCTGCT 660
Query 743 TCATCTATAACATCTTCAGGCAGGATG-AGAATTGGAAGGCCTGGCTCTTTACCGCATAG 801
||||| ||| ||||||||||||||||| | || ||||||||||| |||||||||||||||
Sbjct 661 TCATCCATATCATCTTCAGGCAGGATGCA-AAATGGAAGGCCTGCCTCTTTACCGCATAG 719
Query 802 TCATCCGACCTCTCGAGTGTATTCTGATGCACAGTCTTCTTCAACTGATATT-GTTTTGG 860
|||||| ||||||||||||| ||||||||||||| |||||||||||| || | |||||
Sbjct 720 TCATCCAACCTCTCGAGTGTTTTCTGATGCACAG---TCTTCAACTGAT-TTCGGTTTGG 775
Query 861 TCGATGACGAACACTGTCGTTCTATCCTTAGGCATAGTACTGTTTCCACTAGTAAAATAC 920
||||||||||||| |||||||||||||| |||||||||||||||| |||| ||| ||
Sbjct 776 CCGATGACGAACACACCCGTTCTATCCTTAGACATAGTACTGTTTCCAGTAGTCAAAGAC 835
Query 921 AGATGGATCCTAGACCTCACTTAAAAACACCAAAGTCAGGTGTAAGAGCTGAGGTAGAGC 980
| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 836 ATTTGGATCCTAGACCTCACATAAAAACACCAAAGTCAGGTGTAAAAGCTGAGGTAGAGA 895
Query 981 AGCTAAGGAAAGAAGTGCAAACCACTCTTTCCATGTACAAACAAGCTTGTGAAGAGCTAG 1040
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 896 AGCTAAGGAAAGAAGTACAAACCACTCTTTCCATGTACAAACAGGCTTGTGAAGAGCTAG 955
Query 1041 TTCATAAACAAACACAGGTCCAGTCTCTTTCCTCTGAGTGTATCAAAGAAACAGAAAGGG 1100
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 956 TTCATAAACAAACGCAGGTCCAGTCTCTTTCCTCTGAGTGTATTAAAGAAACGGAAAGGG 1015
Query 1101 TCATCACTGCTCTGgaaaaagaagaaatgcgaaggaaagcagcagcagaagagaaagaaa 1160
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1016 TCATCACTGCTCTGGAAAAAGAAGAAATGCGGAGGAAAGCAGCAGCAGAAGAGAAAGAAA 1075
Query 1161 agcatctaaaagctgtaaaagaagtcgaggaagcaaaaTCAATGCTAGCCAAAGAGTTCT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 AGCATCTAAAAGCTGTAAAAGAAGTCGAGGAAGCAAAATCAATGCTAGCCAAAGAATTCT 1135
Query 1221 GCGAGAGGCAATTAGCCGAGCTAGATGCTCTCAAACAGTCCATAGAGAAACAGAAAGTCA 1280
|||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1136 GCGAGAGGCAATTAGCTGAGCTAGATGCCCTCAAGCAGTCCATTGAGAAACAGAAAGTCA 1195
Query 1281 TTGAGCAACTCTTCTTGAGAGACGGGCGATACAGAAAGTACACAAAAGAAGAAATAGCTG 1340
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 1196 TTGAGCAACTCTTCTTGAGAGACGGGAGGTACAGAAAGTACACCAAAGAAGAAATAGCTG 1255
Query 1341 CAGCTACAGATAATTTCTCTTCCCGTAAAATAATCGGCGAAGGAGGATATGGAAAAGTAT 1400
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1256 TAGCTACAGATAATTTTTCTTCCCGTAAAATAATCGGCGAAGGAGGATACGGAAAAGTAT 1315
Query 1401 ACAAATGCAGTCTTGATCATACCCCAGTAGCTCTTAAAGTTCTCAAACCTGATTCTGTTG 1460
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1316 ACAAATGCAGTCTCGATCATACCCCAGTAGCTCTTAAAGTTCTCAAACCTGATTCAGTCG 1375
Query 1461 AAAAGAAAGAGGAATTCTTGAAAGAGATCTCAGTCTTAAGCCAGCTTCGTCATCCCCATG 1520
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1376 AAAAGAAAGAGGAATTCTTAAAAGAGATCTCTGTCTTAAGCCAGCTTCGTCATCCCCACG 1435
Query 1521 TGGTTCTTCTCCTTGGTGCTTGTCCTGAAAATGGATGCCTTGTCTATGAGTACATGGAAA 1580
|||||||||| || |||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1436 TGGTTCTTCTACTCGGTGCTTGTCCTGAAAATGGCTGCCTTGTTTACGAGTACATGGAAA 1495
Query 1581 ATGGTAGCTTAGATTGTCACATCTCTCCCAAAAAAGGGAAACCATCTCTCTCATGGTTTA 1640
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1496 ATGGTAGCTTAGATTGTCACATCTCCCCCAAAAAAGGGAAACCATCTCTCTCATGGTTTA 1555
Query 1641 TCAGATTCCGAATCATCTATGAAACAGCTTGTGGTTTAGCTTTCCTCCACAACTCTAAGC 1700
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1556 TCAGATTCCGAATCATCTATGAAACCGCTTGTGGTTTAGCTTTCCTCCACAACTCTAAAC 1615
Query 1701 CTGAGCCCATCGTCCACCGTGACCTCAAACCAGGCAACATTCTCTTAGACAGAAACTTTG 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 CTGAGCCCATCGTCCACCGTGACCTCAAACCAGGCAACATTCTCTTAGACAGAAACTTTG 1675
Query 1761 TCAGCAAAATCGGTGACGTTGGACTCGCAAAACTCATGTCAGACGAAGCACCAGACAGTG 1820
| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1676 TTAGCAAAATCGGCGACGTTGGACTCGCAAAACTCATGTCAGAAGAAGCACCAGACAGTC 1735
Query 1821 TGACGGTTTACAGAAACTCGATTATCGCCGGTACACTCTACTACATGGACCCGGAATACC 1880
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1736 TCACAGTTTACAGAAACTCGATTATCGCCGGTACACTCTACTACATGGACCCGGAATATC 1795
Query 1881 AACGAACCGGCACAATCAGACCGAAATCAGATCTTTACGCATTTGGAATCATAATTCTCC 1940
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 AAAGAACCGGCACAATCAGACCGAAATCAGATCTTTACGCATTTGGAATCATAATTCTCC 1855
Query 1941 AGCTTTTAACCGCTCGACATCCCAACGGTCTTCTTTTCTGCGTTGAAGATGCAGTAAAGA 2000
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1856 AGCTTTTAACCGCTCGACATCCCAACGGTCTTCTTTTCTGCGTTGAAGACGCAGTAAAGA 1915
Query 2001 GAGGCTGTTTTGAAGATATGTTAGATGGATCAGTCAAAGACTGGCCCATAGCCGAAGCGA 2060
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1916 GAGGTTGTTTTGAAGATATGTTAGATGGATCAGTCAAAGATTGGCCCATAGCCGAAGCGA 1975
Query 2061 AAGAACTAGCTCGCATTGCAATCAGGTGTTCGCAGCTCAAATGCAGAGACAGACCAGATC 2120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1976 AAGAACTAGCTCGCATTGCAATCAAGTGTTCGCAGCTCAAATGCAGAGACAGACCAGATC 2035
Query 2121 TTAGCACACAAGTCTTGCCTGCTCTCAAACGTATTCTTGAATCTGCAAATAGTAGACTCA 2180
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2036 TCAGCACACAAGTCTTGCCTGCTCTCAAACGGATTCTTGAATCTGCAAATAGTAGACTCA 2095
Query 2181 AGACAGAACAAGCTAACGCACGAGCACCAACTCACTATTACTGTCCAATTCTTAAGGAAA 2240
|||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||||
Sbjct 2096 AGACAGAACAAGCTAATGTTCGACCACCAACTCATTATTACTGTCCAATTCTTAAGGAAA 2155
Query 2241 TAATGGAAGATCCACAAATAGCAGCAGATGGATTCACATACGAACGAAAAGCGATAAAAG 2300
|||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||| |
Sbjct 2156 TAATGGAAGATCCACAGATAGCAGCAGATGGATTCACTTACGAAGGAAAAGCAATAAAGG 2215
Query 2301 AATGGATTC-AAAAACATCAAGATGTGTCTCCTGTTACTAAGCATCGGCTCAAACATTCT 2359
|||| ||| ||||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct 2216 CATGG-TTCCAAAAACATCAAAATGTGTCTCCCGTGACTAAGCATCGGCTAAAAAATTCT 2274
Query 2360 GATCTTACACCGAACCACACTCTCAGATCGGCTATACGAGAGTGGCGATCTCGTTCACGC 2419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2275 GATCTTACACCGAACCACACTCTCAGATCGGCTATACAAGAGTGGCGATCTCGTTCACGC 2334
Query 2420 TTAGACCTCTCCACTACTCTTGGCTCCTACTGA 2452
||||||||||||||||||||||||||||| |||
Sbjct 2335 TTAGACCTCTCCACTACTCTTGGCTCCTATTGA 2367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844185775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5