BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G57035.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value Ahg332000 jgi|Araly1|332000|fgenesh1_pm.C_scaffold_8001343 3659 0.0 > Ahg332000 jgi|Araly1|332000|fgenesh1_pm.C_scaffold_8001343 Length=2367 Score = 3659 bits (1981), Expect = 0.0 Identities = 2244/2373 (95%), Gaps = 9/2373 (0%) Strand=Plus/Plus Query 83 ATGGTGGTGATGACGAACAAATTCTTCGAATTAATCGGCGGAGCTCCGTCGTATTCTTCA 142 |||||||||||||||||||| |||||||||| |||||| ||||||||||||||| ||||| Sbjct 1 ATGGTGGTGATGACGAACAAGTTCTTCGAATCAATCGGTGGAGCTCCGTCGTATACTTCA 60 Query 143 GTATCCGTCGCTGTTAAAGGATCCGTCGGTGACGCCGTAGGAGGAACTGCTAGTCGTCGT 202 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTTTCCGTCGCCGTTAAAGGATCCGTCGGTGACGCCGTAGGAGGAACTGCTAGTCGTCGT 120 Query 203 GCTCTTCGTTGGACAATCGAAAATTTCCTTCCTAAAATCGATAGATTAGTTCTTGTTCAT 262 |||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 GCTCTTCGTTGGACCATTGAAAATTTCCTTCCTAAAATCGATCGATTAGTTCTTGTTCAT 180 Query 263 GTCATGCCTACAGTTACTACTATTCCATCTCCTTCTGGATCGAAGATTCCAATAGAGGAA 322 ||||||||||| || || | ||||||||||||||||||||||||||||||| |||||||| Sbjct 181 GTCATGCCTACCGTCACAAGTATTCCATCTCCTTCTGGATCGAAGATTCCAGTAGAGGAA 240 Query 323 TTGGATGAGAGTGTTGTGTCTATGTATAAACGAGATTTGAGAAAAGAATTTGAACAAGTT 382 ||||| |||||||||||||| ||||||||| |||||||||||||||||| |||||| ||| Sbjct 241 TTGGAAGAGAGTGTTGTGTCGATGTATAAAAGAGATTTGAGAAAAGAATATGAACAGGTT 300 Query 383 TTTGTTCCGTTTAAGAGGATCTGCAAATCCAACAAAGTTGAGACTTTGTTGTTGGAACAT 442 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 301 TTTGTTCCGTTTAAGAGGATCTGCAAATCAAACAAAGTTGAGACTTTGTTGTTGGAACAT 360 Query 443 CATGATCCTGCAAAGGCTCTTTTGAAGTATATGTCAGATACTGATGTTGAGTGTTTAGTG 502 ||||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||| Sbjct 361 CATGATCCTGCAAAGGCACTTTTGAAGTATATGTTAGATTCTGAGGTTGAGTGTTTAGTG 420 Query 503 ATTGGCTCTTGCTCTTCTAATTTCCTCACAAGGAAAAAAGGACAAGAAATGCCATTAACG 562 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 421 ATTGGCTCTTGCTCTTCAAATTTCCTCACAAGGAAAAAGGGACAAGAAATGCCATTAACG 480 Query 563 GTGCTAGGAGAAGCTCCAGAGACATGTGAGATATATGTTGTTTGTAAAGATAGAATCTTA 622 || ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| Sbjct 481 GTACTAGGAGAAGCTCCAGAGACATGTGAGATCTTTGTTGTTTGCAAAGATAGAATCTTA 540 Query 623 ACCAAATCGACGAATCAGTTTACCGCAGATTCATCATCTAGTTTCCGTATACCAGAAGGA 682 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 541 ACCAAATCGACCAATCAGTTTACCGCAGATTCATCTTCTAGTTTCCGTATACCCGAAGGA 600 Query 683 GCTGAAGCTTATACAGAATCTTTCAGTCGCACACGCTCTGATAAGACAGGGTTGTCTGCT 742 |||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||| Sbjct 601 GCTGAAGCTTATACTGAATCTTTCAGTCGCTCACGCTCTGAGAAGACGGGGTTGTCTGCT 660 Query 743 TCATCTATAACATCTTCAGGCAGGATG-AGAATTGGAAGGCCTGGCTCTTTACCGCATAG 801 ||||| ||| ||||||||||||||||| | || ||||||||||| ||||||||||||||| Sbjct 661 TCATCCATATCATCTTCAGGCAGGATGCA-AAATGGAAGGCCTGCCTCTTTACCGCATAG 719 Query 802 TCATCCGACCTCTCGAGTGTATTCTGATGCACAGTCTTCTTCAACTGATATT-GTTTTGG 860 |||||| ||||||||||||| ||||||||||||| |||||||||||| || | ||||| Sbjct 720 TCATCCAACCTCTCGAGTGTTTTCTGATGCACAG---TCTTCAACTGAT-TTCGGTTTGG 775 Query 861 TCGATGACGAACACTGTCGTTCTATCCTTAGGCATAGTACTGTTTCCACTAGTAAAATAC 920 ||||||||||||| |||||||||||||| |||||||||||||||| |||| ||| || Sbjct 776 CCGATGACGAACACACCCGTTCTATCCTTAGACATAGTACTGTTTCCAGTAGTCAAAGAC 835 Query 921 AGATGGATCCTAGACCTCACTTAAAAACACCAAAGTCAGGTGTAAGAGCTGAGGTAGAGC 980 | ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 836 ATTTGGATCCTAGACCTCACATAAAAACACCAAAGTCAGGTGTAAAAGCTGAGGTAGAGA 895 Query 981 AGCTAAGGAAAGAAGTGCAAACCACTCTTTCCATGTACAAACAAGCTTGTGAAGAGCTAG 1040 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 896 AGCTAAGGAAAGAAGTACAAACCACTCTTTCCATGTACAAACAGGCTTGTGAAGAGCTAG 955 Query 1041 TTCATAAACAAACACAGGTCCAGTCTCTTTCCTCTGAGTGTATCAAAGAAACAGAAAGGG 1100 ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 956 TTCATAAACAAACGCAGGTCCAGTCTCTTTCCTCTGAGTGTATTAAAGAAACGGAAAGGG 1015 Query 1101 TCATCACTGCTCTGgaaaaagaagaaatgcgaaggaaagcagcagcagaagagaaagaaa 1160 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1016 TCATCACTGCTCTGGAAAAAGAAGAAATGCGGAGGAAAGCAGCAGCAGAAGAGAAAGAAA 1075 Query 1161 agcatctaaaagctgtaaaagaagtcgaggaagcaaaaTCAATGCTAGCCAAAGAGTTCT 1220 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1076 AGCATCTAAAAGCTGTAAAAGAAGTCGAGGAAGCAAAATCAATGCTAGCCAAAGAATTCT 1135 Query 1221 GCGAGAGGCAATTAGCCGAGCTAGATGCTCTCAAACAGTCCATAGAGAAACAGAAAGTCA 1280 |||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||| Sbjct 1136 GCGAGAGGCAATTAGCTGAGCTAGATGCCCTCAAGCAGTCCATTGAGAAACAGAAAGTCA 1195 Query 1281 TTGAGCAACTCTTCTTGAGAGACGGGCGATACAGAAAGTACACAAAAGAAGAAATAGCTG 1340 |||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| Sbjct 1196 TTGAGCAACTCTTCTTGAGAGACGGGAGGTACAGAAAGTACACCAAAGAAGAAATAGCTG 1255 Query 1341 CAGCTACAGATAATTTCTCTTCCCGTAAAATAATCGGCGAAGGAGGATATGGAAAAGTAT 1400 ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1256 TAGCTACAGATAATTTTTCTTCCCGTAAAATAATCGGCGAAGGAGGATACGGAAAAGTAT 1315 Query 1401 ACAAATGCAGTCTTGATCATACCCCAGTAGCTCTTAAAGTTCTCAAACCTGATTCTGTTG 1460 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1316 ACAAATGCAGTCTCGATCATACCCCAGTAGCTCTTAAAGTTCTCAAACCTGATTCAGTCG 1375 Query 1461 AAAAGAAAGAGGAATTCTTGAAAGAGATCTCAGTCTTAAGCCAGCTTCGTCATCCCCATG 1520 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | Sbjct 1376 AAAAGAAAGAGGAATTCTTAAAAGAGATCTCTGTCTTAAGCCAGCTTCGTCATCCCCACG 1435 Query 1521 TGGTTCTTCTCCTTGGTGCTTGTCCTGAAAATGGATGCCTTGTCTATGAGTACATGGAAA 1580 |||||||||| || |||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 1436 TGGTTCTTCTACTCGGTGCTTGTCCTGAAAATGGCTGCCTTGTTTACGAGTACATGGAAA 1495 Query 1581 ATGGTAGCTTAGATTGTCACATCTCTCCCAAAAAAGGGAAACCATCTCTCTCATGGTTTA 1640 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1496 ATGGTAGCTTAGATTGTCACATCTCCCCCAAAAAAGGGAAACCATCTCTCTCATGGTTTA 1555 Query 1641 TCAGATTCCGAATCATCTATGAAACAGCTTGTGGTTTAGCTTTCCTCCACAACTCTAAGC 1700 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1556 TCAGATTCCGAATCATCTATGAAACCGCTTGTGGTTTAGCTTTCCTCCACAACTCTAAAC 1615 Query 1701 CTGAGCCCATCGTCCACCGTGACCTCAAACCAGGCAACATTCTCTTAGACAGAAACTTTG 1760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1616 CTGAGCCCATCGTCCACCGTGACCTCAAACCAGGCAACATTCTCTTAGACAGAAACTTTG 1675 Query 1761 TCAGCAAAATCGGTGACGTTGGACTCGCAAAACTCATGTCAGACGAAGCACCAGACAGTG 1820 | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1676 TTAGCAAAATCGGCGACGTTGGACTCGCAAAACTCATGTCAGAAGAAGCACCAGACAGTC 1735 Query 1821 TGACGGTTTACAGAAACTCGATTATCGCCGGTACACTCTACTACATGGACCCGGAATACC 1880 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1736 TCACAGTTTACAGAAACTCGATTATCGCCGGTACACTCTACTACATGGACCCGGAATATC 1795 Query 1881 AACGAACCGGCACAATCAGACCGAAATCAGATCTTTACGCATTTGGAATCATAATTCTCC 1940 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1796 AAAGAACCGGCACAATCAGACCGAAATCAGATCTTTACGCATTTGGAATCATAATTCTCC 1855 Query 1941 AGCTTTTAACCGCTCGACATCCCAACGGTCTTCTTTTCTGCGTTGAAGATGCAGTAAAGA 2000 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1856 AGCTTTTAACCGCTCGACATCCCAACGGTCTTCTTTTCTGCGTTGAAGACGCAGTAAAGA 1915 Query 2001 GAGGCTGTTTTGAAGATATGTTAGATGGATCAGTCAAAGACTGGCCCATAGCCGAAGCGA 2060 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1916 GAGGTTGTTTTGAAGATATGTTAGATGGATCAGTCAAAGATTGGCCCATAGCCGAAGCGA 1975 Query 2061 AAGAACTAGCTCGCATTGCAATCAGGTGTTCGCAGCTCAAATGCAGAGACAGACCAGATC 2120 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1976 AAGAACTAGCTCGCATTGCAATCAAGTGTTCGCAGCTCAAATGCAGAGACAGACCAGATC 2035 Query 2121 TTAGCACACAAGTCTTGCCTGCTCTCAAACGTATTCTTGAATCTGCAAATAGTAGACTCA 2180 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2036 TCAGCACACAAGTCTTGCCTGCTCTCAAACGGATTCTTGAATCTGCAAATAGTAGACTCA 2095 Query 2181 AGACAGAACAAGCTAACGCACGAGCACCAACTCACTATTACTGTCCAATTCTTAAGGAAA 2240 |||||||||||||||| | ||| |||||||||| ||||||||||||||||||||||||| Sbjct 2096 AGACAGAACAAGCTAATGTTCGACCACCAACTCATTATTACTGTCCAATTCTTAAGGAAA 2155 Query 2241 TAATGGAAGATCCACAAATAGCAGCAGATGGATTCACATACGAACGAAAAGCGATAAAAG 2300 |||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||| | Sbjct 2156 TAATGGAAGATCCACAGATAGCAGCAGATGGATTCACTTACGAAGGAAAAGCAATAAAGG 2215 Query 2301 AATGGATTC-AAAAACATCAAGATGTGTCTCCTGTTACTAAGCATCGGCTCAAACATTCT 2359 |||| ||| ||||||||||| |||||||||| || |||||||||||||| ||| ||||| Sbjct 2216 CATGG-TTCCAAAAACATCAAAATGTGTCTCCCGTGACTAAGCATCGGCTAAAAAATTCT 2274 Query 2360 GATCTTACACCGAACCACACTCTCAGATCGGCTATACGAGAGTGGCGATCTCGTTCACGC 2419 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2275 GATCTTACACCGAACCACACTCTCAGATCGGCTATACAAGAGTGGCGATCTCGTTCACGC 2334 Query 2420 TTAGACCTCTCCACTACTCTTGGCTCCTACTGA 2452 ||||||||||||||||||||||||||||| ||| Sbjct 2335 TTAGACCTCTCCACTACTCTTGGCTCCTATTGA 2367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98844185775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5