BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57040.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495796 jgi|Araly1|495796|fgenesh2_kg.8__1612__AT5G57040.1 1074 0.0
> Ahg495796 jgi|Araly1|495796|fgenesh2_kg.8__1612__AT5G57040.1
Length=739
Score = 1074 bits (581), Expect = 0.0
Identities = 696/749 (93%), Gaps = 17/749 (2%)
Strand=Plus/Plus
Query 112 TAATCCAAGATTCTCTTCCATGGCTTCTATTTTCAGACCTTCTTCAGCTTCACTTGATTT 171
||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 1 TAATCCAAGATTCTCTTCCATGGCTTCTATTTTCAGA-C--CTTCAGCTTCGTTTGATTT 57
Query 172 ACGACCAAAGGTTATTTGCACGAATCTCTCTACGAAAGAGCGGTTTGAGTTTCAGAAGAA 231
|||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||
Sbjct 58 ACGACCAAAGGTTATTTGCAAGAAACTCTCTACGAGAGAGCGGTTTGAGTTCCAGAAGAA 117
Query 232 GAGTGTGAGGAAAGAAAGGATCAATGTTAGGTTTTATAGCTTGAAGGC---TAAGGCACA 288
|||| |||||||||||||||||||| ||||||||| |||||||||||| ||| |||||
Sbjct 118 GAGTCTGAGGAAAGAAAGGATCAATATTAGGTTTTGTAGCTTGAAGGCTAATAAAGCACA 177
Query 289 AGGATCGTCAATTGAAGGGATTAGTGTTGTACAAGAGAAAGAGCTTAACAACAAAACCGA 348
|||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 178 AGGA---TCAATTGAAGGGATTAGTGTTGTAGAAGAGAAACAGCTTAACAACAAAACCGA 234
Query 349 TTATGGAGTTGTTGGGGTTCATCATGTCGGTCTGCTCTGCGAGAACCTAGAACGGTCACT 408
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 235 TTATGGAGTTGTTGGGGTTCATCATGTTGGTCTGCTCTGCGAGAACCTAGAACGGTCACT 294
Query 409 CGAGTTTTACCAGAACATTTTAGGCCTTGAGATCAACGAAGCAAGGCCTCACGACAAGCT 468
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 295 CGAGTTCTACCAGAACATTTTAGGCCTTGAGATCAACGAGGCAAGGCCTCACGATAAGCT 354
Query 469 TCCATATAGAGGAGCATGGTTATGGGTAGGTTCAGAAATGATTCATCTT-ATGGAGCTTC 527
||| ||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||
Sbjct 355 TCCGTATAGAGGAGCATGGTTATGGGTTGGTTCAGAGATGATTCAT-TTAATGGAGCTTC 413
Query 528 CAAATCCAGATCCATTAACAGGTAGACCCGAGCACGGAGGCCGGGATCGACACGCTTGTA 587
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CAAATCCAGATCCGTTAACAGGTAGACCCGAGCACGGAGGCCGGGATCGACACGCTTGTA 473
Query 588 TTGCAATCCGTGATGTTTCAAATCTGAAAGAGATCTTAGACAAAGCTGGAATTGCA-TAT 646
| ||||||||||||||||||||||||||||||||||| ||||||||||| || | | |||
Sbjct 474 TAGCAATCCGTGATGTTTCAAATCTGAAAGAGATCTTGGACAAAGCTGGGATCG-AGTAT 532
Query 647 ACAATGAGTAAGTCAGGGAGGCCAGCGATATTTACTCGTGATCCAGACGCAAACGCTCTT 706
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ACGATGAGTAAGTCAGGGAGGCCAGCGATATTTACTCGTGATCCAGACGCAAACGCTCTG 592
Query 707 GAGTTCACCCAAGTTTGATTTGAGTCTATTTGTAGATGAATCCTCTAAACTTTCACTTGA 766
|||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 593 GAGTTCACTCAAGTTTGAGTTGAGTCTATTTGTAGATGAATCCCCTAAACTTTCACTTGA 652
Query 767 TTATCAGTTGTAAATGCTCTTCATATAGAACTGCA-AAAAGCAAACCAAA-TCCTTGTTG 824
|||| ||||||| |||||||||||||||||| | | |||||||||||||| | |||| |
Sbjct 653 TTATAAGTTGTAGATGCTCTTCATATAGAACAG-AGAAAAGCAAACCAAACTG-TTGTCG 710
Query 825 ACTTATTATATAATACCACAATACATATT 853
||||||||| ||||||||||||| |||||
Sbjct 711 ACTTATTATTTAATACCACAATAAATATT 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5