BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57050.1
Length=2081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495797 jgi|Araly1|495797|fgenesh2_kg.8__1613__AT5G57050.1 2298 0.0
> Ahg495797 jgi|Araly1|495797|fgenesh2_kg.8__1613__AT5G57050.1
Length=1929
Score = 2298 bits (1244), Expect = 0.0
Identities = 1549/1687 (92%), Gaps = 57/1687 (3%)
Strand=Plus/Plus
Query 155 tttggttctttAATTGACAAATCTCTCTCTATCTGTTTCATGTGCTAGCTAAGGTTGTCT 214
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 71 TTTGGTTCTTTAATTGGCAAA----TCTCTATCTGTTTCATGTGCTAGCTAAGGTTGTCT 126
Query 215 TCACTTTCCTCTAATGAGTCATGAGTTTCTTGTCTTCATCTTCATCTAATAAAGTTAACA 274
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 127 TCACTTTCCTCTTATGAGTCATGAGTTTCTTGTCTTCATCTTC-TCTAATAAAGTT---A 182
Query 275 ACACTCTCATCAATTTTTATTATGTTCAAATCTGTCTGACTTTTCGTTCTTTTCTCTTAC 334
||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 183 ACACTCTCATCAA--TTT-TTATGTTCAAATCTGTC-GACTTTTCGTT-TTTTCTCTTAC 237
Query 335 ACCCAAGCGTTTTAACAATCTAACATCTGTCTCTTTGAATACTTAGATATCCAACTTCAA 394
||| |||||||||||| ||| |||||||||||||||||| || |||||||| ||||||||
Sbjct 238 ACCGAAGCGTTTTAACCATCAAACATCTGTCTCTTTGAA-AC-TAGATATCAAACTTCAA 295
Query 395 TTTCTCTCCTTTCTCTTCCCAACTTTGATTCCTGATTTGGGTTTTTGTTAAAGTTCAAGA 454
||| ||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||
Sbjct 296 TTTGTCTCCTTTCTCTT-CCAAATTTGATTCCTGATTTGGGTCTTTGTTAAAGATCAA-C 353
Query 455 AAGTTCttttttctttttttttCCTCCTTTAATGGACGAAGTTTCTCCTGCAGTCGCTGT 514
||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 354 AAG-----TTTT-TTTTTTTTTCTTCCATTAATGGACGAAGTTTCTCCTGCAGTCGCTGT 407
Query 515 TCCATTCAGACCATTCACTGACCCTCACGCCGGACTTAGAGGCTATTGCAACGGTGAATC 574
|||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 408 TCCATTCAGACCATTCCCTGAGCCTCACGCCGGAATTAGAGGCTATTGCAACGGCGAATC 467
Query 575 TAGGGTTACTTTACCGGAAAGTTCTTGTTCTGGCGACGGAGCTATGAAAGATTCTTCCTT 634
||||||| | |||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 468 TAGGGTTTCGTTACCGGAAAGTTCTTGTCCCGGCGACGGAGCTATGAAAGATTCATCCTT 527
Query 635 TGAGATCAATACAAGACAAGATTCA-T----TGA-C---ATCATC-A-----TCATCTGC 679
||||||||| || || ||||||||| | | | | |||||| | ||||||||
Sbjct 528 TGAGATCAACACGAGGCAAGATTCATTAACATCATCATTATCATCAACGTCGTCATCTGC 587
Query 680 TATGGC------A---G--G-T---GTGGATATCTCCGCCGGAGATGAAATCAACGGTTC 724
|||||| | | | | |||||||||||||| ||||||||||||||||||||
Sbjct 588 TATGGCAGGTGTACTTGATGTTACCGTGGATATCTCCGCGGGAGATGAAATCAACGGTTC 647
Query 725 AGATGAGTTTGATCCGAGATCGATGAATCAGAGTGAGAAGAAAGTACTTAGTAGAACAGA 784
||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 648 AGATGAGTTTGATTCGAGATCGACGAATCAGAGTGAGAAGAAAGTACTCAGTAGAACAGA 707
Query 785 GAGTAGAAGTCTGTTTGAGTTCAAGTGTGTTCCTTTATATGGAGTGACTTCGATTTGTGG 844
||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 708 GAGTAGAAGTCTGTTCGAGTTCAAGAGTGTTCCTTTATATGGAGTAACTTCGATTTGTGG 767
Query 845 TAGACGACCAGAGATGGAAGATTCTGTCTCAACGATTCCTAGATTCCTTCAAGTTTCTTC 904
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AAGACGACCAGAGATGGAAGATTCTGTCTCAACGATTCCTAGATTCCTTCAAGTTTCTTC 827
Query 905 TAGTTCGTTGCTTGATGGTCGAGTCACTAATGGATTTAATCCTCACTTGAGTGCTCATTT 964
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 828 AAATTCGTTGCTTGATGGTCGAGTCACTAATGGATTTAATCCTCACTTGAGTGCTCACTT 887
Query 965 CTTTGGTGTTTACGATGGCCATGGCGGTTCTCAGGTAGCGAATTATTGTCGTGAGAGGAT 1024
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CTTCGGTGTTTACGATGGCCATGGCGGTTCTCAGGTAGCGAATTATTGTCGTGAGAGGAT 947
Query 1025 GCATCTGGCTTTGACGGAGGAGATAGTGAAGGAGAAACCGGAGTTTTGTGACGGTGACAC 1084
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 948 GCATCTGGCTTTGACGGAGGAGATAGTGAAGGAGAAGCCGGAGTTTTGCGACGGTGACAC 1007
Query 1085 GTGGCAAGAGAAGTGGAAGAAGGCTTTGTTCAACTCTTTTATGAGAGTTGACTCGGAGAT 1144
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1008 GTGGCAAGAGAAGTGGAAGAAGGCTTTGTTCAACTCTTTTATGAGAGTTGACTCCGAGAT 1067
Query 1145 TGAAACTGTGGCTCATGCTCCGGAAACTGTTGGGTCTACCTCGGTGGTTGCGGTTGTCTT 1204
|||| | ||||| |||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1068 TGAACCCGTGGCGCATGCTCCGGAAACAGTTGGGTCCACCTCGGTGGTTGCCGTTGTCTT 1127
Query 1205 TCCGACTCACATCTTTGTCGCGAATTGCGGCGACTCTAGGGCGGTTTTGTGTCGCGGCAA 1264
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1128 TCCCACTCACATCTTTGTCGCGAATTGCGGCGACTCCAGGGCGGTTTTGTGTCGCGGCAA 1187
Query 1265 AACGCCACTCGCGTTGTCGGTTGATCACAAACCGGATAGGGATGATGAAGCGGCGAGGAT 1324
|||||||||||| || || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1188 AACGCCACTCGCATTATCCGTTGATCACAAACCGGATAGAGATGATGAAGCAGCGAGGAT 1247
Query 1325 AGAAGCTGCCGGTGGGAAAGTAATCCGGTGGAACGGGGCTCGTGTATTTGGTGTTCTCGC 1384
|||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1248 AGAAGCAGCTGGAGGGAAAGTAATCCGGTGGAACGGGGCTCGTGTTTTTGGTGTGCTCGC 1307
Query 1385 AATGTCAAGATCCATTGGCGATAGATACCTTAAACCGTCAGTAATTCCGGATCCAGAAGT 1444
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1308 AATGTCAAGATCCATTGGCGATAGGTACCTAAAACCATCAGTAATTCCGGATCCAGAAGT 1367
Query 1445 GACTTCAGTGCGGCGAGTAAAAGAAGATGATTGTCTCATCTTAGCAAGTGATGGTCTTTG 1504
||||||||| |||||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 1368 GACTTCAGTCCGGCGAGTCAAAGAAGACGACTGTCTCATCTTAGCAAGTGACGGTCTTTG 1427
Query 1505 GGATGTAATGACAAACGAAGAAGTGTGCGATTTGGCTCGGAAACGGATTTTACTATGGCA 1564
||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 1428 GGATGTAATGACAAACGAAGAAGTGTGTGATTTGGCTCGGAAAAGGATTTTGTTATGGCA 1487
Query 1565 TAAGAAGAACGCGATGGCCGGAGAGGCTTTGCTTCCGGCGGAGAAAAGAGGAGAAGGAAA 1624
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1488 CAAGAAGAACGCGATGGCCGGAGAGGCTTTGCTTCCGGCCGAGAAAAGAGGAGAAGGAAA 1547
Query 1625 AGATCCTGCAGCAATGTCCGCGGCAGAGTATTTGTCGAAGATGGCTTTGCAAAAAGGAAG 1684
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1548 AGATCCTGCAGCAATGTCCGCGGCCGAGTATTTGTCGAAGATGGCTTTGCAAAAAGGTAG 1607
Query 1685 CAAAGACAATATAAGTGTGGTAGTGGTTGATTTGAAGGGAATAAGGAAA-TTCAAGAGCA 1743
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1608 CAAAGACAATATAAGTGTAGTAGTGGTTGATTTGAAGGGAATAAG-AAAGTTCAAGAGCA 1666
Query 1744 AATCCTTGAATTGAAAAAGAAGGTTTGGAAGAAAAGTGaaaaaaaaagttttgatggtgg 1803
|||||||||| ||||||||| |||||||| |||| ||||||||| |||||||||||||
Sbjct 1667 AATCCTTGAACTGAAAAAGATGGTTTGGATTAAAAATGAAAAAAA--GTTTTGATGGTGG 1724
Query 1804 gtaaaaa 1810
|||||||
Sbjct 1725 GTAAAAA 1731
Score = 169 bits (91), Expect = 9e-41
Identities = 189/230 (82%), Gaps = 32/230 (14%)
Strand=Plus/Plus
Query 1837 aaaCAACAGGTAATAATTACATTGTAATATTAATTTCCTGcttaaatttg-ttatttact 1895
||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1727 AAA-AACAGGTAATAATTACATTGTAATATTAATTTCCTTCTTAAGTTTTATTATTTACT 1785
Query 1896 ttctt-agtcttcccaccattatttaatctttttatatttattttaCTAACATGATATAT 1954
|| || ||||||||||||||| |||||||||||| | ||| || |||||||||| |||
Sbjct 1786 TTGTTTAGTCTTCCCACCATTGTTTAATCTTTTT-T-TTT-TT--ACTAACATGAGATA- 1839
Query 1955 ATAATGTACATGGGAATAGTGTAACTTCCAAACAAAAAGCCCCCTTGT-AtttttttttA 2013
|| ||| | ||||||||||||| | |||||||| | ||||||| |
Sbjct 1840 AT---GTA---G------------CTTCCAAACAAAA-GTCCCCTTGTGAATTTTTTT-A 1879
Query 2014 TCTTGGGG-TTAGTTGTAATAA-CACTACATTCGTCTACGTAAATATTTA 2061
|||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1880 TCTTGGGGGTTAGTTGTAATAAACACTACATTCATCTACGTAAATATTTA 1929
Score = 117 bits (63), Expect = 3e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 35 GAGGGAGAGAGAGAGTTCAGAATCTCTAAATGGCTGAAACGAATTGCCCAGAATCCAGGA 94
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 GAGAGAGAGAGAGAGATCAGAATCTCTAAATGGCTGAAACGAATTGCCCAGAACCCAGGA 60
Query 95 AACTCTGAtttt 106
||||||||||||
Sbjct 61 AACTCTGATTTT 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78275453475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5