BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57060.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495799 jgi|Araly1|495799|fgenesh2_kg.8__1615__AT5G57060.1 928 0.0
Ahg945470 jgi|Araly1|945470|scaffold_701699.1 331 4e-90
> Ahg495799 jgi|Araly1|495799|fgenesh2_kg.8__1615__AT5G57060.1
Length=755
Score = 928 bits (502), Expect = 0.0
Identities = 627/687 (91%), Gaps = 10/687 (1%)
Strand=Plus/Plus
Query 79 TTCGTTTAATCGCCAGATTCATTTCGAAAAATCTTGCACTAGATTCTCTTATCTTCGGGA 138
|||||||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 73 TTCGTTTAATTACCAGATTCATCTCGACAAATCTTGCACTAAATTCTCTTATCTTCGGGA 132
Query 139 AATTGAAGATCTGGGTCATAAGCAATAGCTTAAAGCATGGACG-AA--AATTCTAAATTT 195
||| |||||||||| | |||||||| ||| ||||||||||||| || ||||||||||||
Sbjct 133 AATCGAAGATCTGGATAATAAGCAAGAGC-TAAAGCATGGACGAAAGTAATTCTAAATTT 191
Query 196 GTATCTGGAAACGGTAGAACCGAGCTGGTTAAATTCATTGCTGATAGGCATGCCAAACTC 255
||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 192 GTATCTGGAAATGGTAGAACCGAGCTGGCTAAATTCATTGTTGATAGGCATGCTAAACTC 251
Query 256 ATGAAACAAGCCTCTCGACATTATTCCGCAATTAAAGATGCTATGGCTCGTGGGaaaaaa 315
|||||||||||| ||||| ||| ||||||| ||||||||| ||||||||||||||||| |
Sbjct 252 ATGAAACAAGCCGCTCGATATTCTTCCGCACTTAAAGATGTTATGGCTCGTGGGAAAAGA 311
Query 316 aGATATACACTTGTAAAAGATGTAGACGACATGGAAACAGGAGCATATGACAAACCTCTT 375
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 312 AGATATACGCTTGTAAAAGATGTAGACGACATGGAAACAGGAGTATATGACAAACCTCTT 371
Query 376 CCATGCTTTGGTTGTGGAATCGGATGGTTTTCCTTCCTCCTAGGATTTATGTTCCCATTT 435
||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||| ||
Sbjct 372 CCATGCTTTGGTTGTGGAATCGGATGGTTCTCCTTTCTCTTGGGATTTATGTTTCCACTT 431
Query 436 TTGTGGTACTATGCTGCATTCCTTTATTTCGGGAACTATTATCGTAAAGATCCTAGAGAA 495
||||||||||||||| |||| |||||||||||||||||||| || ||||||||| |||||
Sbjct 432 TTGTGGTACTATGCTACATTTCTTTATTTCGGGAACTATTACCGCAAAGATCCTCGAGAA 491
Query 496 AGAGCCGGTCTTGCTGCTTCCGCAATCACTGCGATGGGCTTCTCTCTTGTCTTACTCGTG 555
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 492 AGAGCCGGTCTTGCTGCTTCAGCAATCACTGCGATGGGATTCTCTCTTGTGTTACTCGTG 551
Query 556 ATTTTTGCTTTCCGGTGGTTTTACTATCCTTGAGATAAAG-AAGTAACTATGTTAACT-A 613
||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||| |
Sbjct 552 ATTTTTGCTTTCCGGTGGTTTTACTATCCTTAAGATAT-GCAAGTAACTATGT-AACTTA 609
Query 614 TCATTCATACCTATAAGCTCCGTGTTCATCAAGGAATAGTCTCGGAACTTGATGTCTCAT 673
||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||||
Sbjct 610 TCATTCATACCTATAAGTTCCGTGTTCATAAAAGAATAGTCGCGGAAGTTGATGTCTCAT 669
Query 674 GTACATTCACATAAACCAAATGAATTTCACTTCGATATTTTTCTCAAGTTGTATAtt-tt 732
||||||||||||||||||| ||||||| |||||||| |||||||||| ||| ||| ||
Sbjct 670 GTACATTCACATAAACCAA-TGAATTTTACTTCGATCCTTTTCTCAAGCTGTGTATGATT 728
Query 733 ttttGTTGAATGAAAGTTTTTCAGTCC 759
||||||||||| || ||||||||||||
Sbjct 729 TTTTGTTGAATTAACGTTTTTCAGTCC 755
> Ahg945470 jgi|Araly1|945470|scaffold_701699.1
Length=446
Score = 331 bits (179), Expect = 4e-90
Identities = 306/366 (84%), Gaps = 14/366 (4%)
Strand=Plus/Plus
Query 217 GAGCTGGTTAAATTCATTGCTGATAGGCATGCCAAACTCATGAAACAAGCCT-CTCGACA 275
||||||||||||| ||| ||||||| ||||| | ||| ||| || || || || | |
Sbjct 62 GAGCTGGTTAAATCCATGGCTGATAAGCATGTCGGTCTCGTGAGACCAG-CTGCTAAATA 120
Query 276 TTATTCCGCAATTAAAGATGCTATGGCT-CGTGGGaaaaaaaGATATACACTTGTAAAAG 334
||| || |||||||||||| |||||| | |||||||| ||||||||| ||||||||||
Sbjct 121 TTACTCTGCAATTAAAGATTCTATGG-TGAGTGGGAAAGGAAGATATACGCTTGTAAAAG 179
Query 335 ATGTAGACGACATGGAAACA-GGAGCATATGACAAACCTCTTCCATGCTTTGGTTGTGGA 393
|||| ||||| |||||| | |||| |||||||| ||||||||||||||||||||||||
Sbjct 180 ATGTTGACGAGGTGGAAA-ATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGA 238
Query 394 ATCGGATGGTTTTCCTTCCTCCTAGGATTTATGTTCCCATTT-TTGTGGTACTATGCTG- 451
||||||||||| ||||||||| | || ||| |||| || ||| |||||||||||||| |
Sbjct 239 ATCGGATGGTTCTCCTTCCTCTTGGGTTTTGTGTTTCC-TTTCTTGTGGTACTATGC-GA 296
Query 452 CATTCCTTTATTTCGGGAACTATTATCGTAAAGATCCTAGAGAAAGAGCCGGTCTTGCTG 511
|||| || |||||||||||||| || || || |||||||||||||||||||| |||||||
Sbjct 297 CATTTCTATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCTG 356
Query 512 CTTCCGCAATCACTGCGATGGGCTTCTCTCT--TGTCTTACTCGTGATTTTTGCTTTCCG 569
||||||||||| |||||||||| ||||| || || || ||| |||||| ||| |||| |
Sbjct 357 CTTCCGCAATCGCTGCGATGGGATTCTCCCTCCTG-CT-ACTGGTGATTGTTGTTTTCAG 414
Query 570 GTGGTT 575
||||||
Sbjct 415 GTGGTT 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5