BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G57070.1 Length=2278 Score E Sequences producing significant alignments: (Bits) Value Ahg495801 jgi|Araly1|495801|fgenesh2_kg.8__1617__AT5G57070.1 2261 0.0 > Ahg495801 jgi|Araly1|495801|fgenesh2_kg.8__1617__AT5G57070.1 Length=2112 Score = 2261 bits (1224), Expect = 0.0 Identities = 1602/1777 (90%), Gaps = 55/1777 (3%) Strand=Plus/Plus Query 22 tctATTCAAAAATTATACCGGCAAAAATGGACGATCAACCGCCGCTGATCTGGCCCCAGT 81 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1 TCTATTCAAAAATTATACCGGCAAAAATGGACGATCAACCGCCGCTAATCTGGCCGCAGT 60 Query 82 TTGACTCTACCGGATATGCTCGCCGGAGATCATCGATTCCGGCGATTTTAGTTCCGGCGA 141 |||| |||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||| Sbjct 61 TTGAATCTACCGGATATACTCACCGGAGATCACCGATTCCGGCGATGTTAGTTCCGGCGA 120 Query 142 TGATCGGAGTAACTTCAGCGGCGATTTTTCTTGTCTTTGTGACCTTCGTCG-TTCCTACG 200 |||||||||| | ||||||||||||||||||| | ||||||| ||| || | | ||| || Sbjct 121 TGATCGGAGTTATTTCAGCGGCGATTTTTCTTTTGTTTGTGAACTTTGT-GATCCCTCCG 179 Query 201 TTTCTCTCAGTCACATCTCAGATTCTTCAGCCAG-CTTCGGTGAAGCGAGGATGGGATTC 259 |||||||| ||||||||||||||||||||||| | | |||||||| |||||||||||||| Sbjct 180 TTTCTCTCGGTCACATCTCAGATTCTTCAGCC-GTCATCGGTGAAACGAGGATGGGATTC 238 Query 260 GATAAACGTGGTTTTAGTGGTTTTCGCGATTCTCTGCGGCGTACTCGCTAGACGAAACGA 319 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 239 GATAAACGTCGTTTTAGTAGTTTTCGCGATTCTCTGCGGCGTACTCGCTAGACGTAACGA 298 Query 320 CGACGGATTGTCTTCGGAGTCTTTACACGGCGGAGAAGAAGAAGAAGTAGGAGGAGGAGC 379 ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 299 TGACGGATTGTCGTCAGAGTCTTTACACGGCGGAGAAGAAGAAGAAGT---AGGAGGAGC 355 Query 380 CGTTACGAATGGTGAAATGACCGTCGGTGAGATTAGCAAAATCTCATCCTCGTCGTCGAC 439 || |||| ||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 356 TGTGACGAGTGGTGAAATGACCGTCGGTGAGATTAGCAAAATCTCATCTTCATCGTCGGC 415 Query 440 GGTTTCAGAGCAGTGGTTTGATGACGTGTATGATTCTGATAGGCTTAAGATCTATGAGAG 499 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 416 GGTTTCAGAGCAGTGGTTTGATGACGTGTATGACGCCGATAGGCTTAAGATCTATGAGAG 475 Query 500 TGTAAGTAGTCGAAGTTTTTCTCATGGATTACCGGTTACCGGGAA-TGTACCGTTGAGGC 558 ||| |||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| Sbjct 476 TGTGAGTAGTCGGAGTTTCTCTCATGGATTACCGGTTACC-GGAACTGTACCGTTGAGGC 534 Query 559 GTAGTAGTAGCTCTTATCCTGATCTCAGACAAGGAGTTTTTAGAGAAACTGGCGATCGAC 618 ||||| |||| || ||||||||||| |||||||||||||| || |||||||||||||| | Sbjct 535 GTAGTTGTAGTTCGTATCCTGATCTGAGACAAGGAGTTTTCAGGGAAACTGGCGATCGCC 594 Query 619 GGTTCCGGTTTTATGATGATTTCGAAATCGATAAGTACCGATCGCAGGATTCGAGTTCTT 678 |||| |||||||| ||||| || |||| || | || || | | || |||||| Sbjct 595 GGTTTCGGTTTTACGATGA-TT-----TCGA-AA-T-CC-AT---A--A-TC--GTTCTT 636 Query 679 ACCAACAATTTCAGAATCTTTCTAAAACT-GAAATCGAGGAAGAAGAATCTGAGCCTAAA 737 || || |||||||||||| |||||||| | || ||| ||||||||||||||||||||| Sbjct 637 ACGAAGAATTTCAGAATCGTTCTAAAA-TAGAGATC---GAAGAAGAATCTGAGCCTAAA 692 Query 738 GAGATTCAGATTGATACGTTCGTTGTAAAACCGTCTTCTCCGCCGCAACAACCACCGGCA 797 ||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| Sbjct 693 GAGATTCAGATTGATACATTCGTTGTAAAACCGTCTTCTCCGCCGCAACAATCATCGGCA 752 Query 798 --A-CACCACCACCTCCTCC-CC--CACCTCCGCCGGTTGAAG-TTCCGCAGAAACCGAG 850 | || |||| |||||||| || |||||||||||||||||| |||| ||||||||||| Sbjct 753 CCACCAACACCTCCTCCTCCTCCTGCACCTCCGCCGGTTGAAGTTTCC-CAGAAACCGAG 811 Query 851 AAGGACTCATCGTTCTGTTAGAAACAGAGATTTACAAGAAAACGCCAAACGCAGTGAGAC 910 |||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| | Sbjct 812 AAGGACTCATCGCTCTGTTAGAAACAGAGATATACAAGAAAACGTAAAACGCAATGACAT 871 Query 911 TAAGTTTAAACGAACGTTTCAGCCTCCGCCGTCACCACCGCCTCCACCGCCCCCACCACC 970 ||||||||||||| ||||||| ||| | || | || |||||||| |||||||| Sbjct 872 TAAGTTTAAACGAGCGTTTCAACCT----C--CA--A-ATCCACCACCGCCTCCACCACC 922 Query 971 TCCTCAGCCGCTTATAGCCGCTACGCCACCAAGAAAACAAGGAACTCTTCAAAGAAGAAA 1030 ||||| |||||| ||| |||| |||||||| ||||| |||| |||||||||| || |||| Sbjct 923 TCCTCCGCCGCTGATAACCGCGACGCCACCGAGAAAGCAAGAAACTCTTCAACGACGAAA 982 Query 1031 GAGCAATGCGGCGAAAGAGATTAAAATGGTTTTCGCTTCTCTGTATAATCAAGGgaagaa 1090 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 983 GAGCAATGCGGCGAAAGAGATTAAAATGGTTTTCGCTTCTCTGTATAATCAAGGAAAGAG 1042 Query 1091 gaagaagaagcttcagaaatcgaagagaaaagagagaatcgaaTCTTCTCCGATGGTGGA 1150 |||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| Sbjct 1043 GAAGAAGAAGATTCAGAAATCAAAGAGAAAGGAGAGAATCGAATCTTCTCCGGCGGTGGT 1102 Query 1151 AGATGTA-ACGGAACCACCGCAATACCAATCGTTAATCCCACCACCGTCTCCGCCTCCTC 1209 |||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1103 GGATG-AGACGGAACCACCGCAATACCAATCCTTAATTCCACCACCGTCTCCGCCTCCTC 1161 Query 1210 CTCCACCACCACCTCCGCCTCC-ATTGCGATCGTCACAATCAGTATTCTACGGATTGTTC 1268 |||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| Sbjct 1162 CTCCACCACCTCCTCCACCTCCGCCT-CGATCGTCACAATCAGTATTCTACGGATTGTTT 1220 Query 1269 AAGAAAGGAGTTAAGAGCAACAAAAAGATTCATTCCGTTCCGGCGCCGCCTCCACCTCCA 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1221 AAGAAAGGAGTTAAGAGCAACAAAAAGATTCATTCCGTTCCGGCGCCGCCTCCACCTCCA 1280 Query 1329 CCGCCGAGATATACCCAATTTGATCCTCAGACACCACCACGGAGAGTGAAATCCGGAAGA 1388 ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1281 CCGCCGAGACACACCCAATTTGATCCTCAGACACCACCACGGAGAGTGAACTCCGGAAGA 1340 Query 1389 CCTCCGCGTCCGACGAAACCGAAGAATTTCAATGAAGAGAACAACGGCCAAGGATCTCCG 1448 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1341 CCTCCGCGTCCGACGAAACCGACGAATTTCAACGAAGAGAACAACGGCCAAGGATCTCCG 1400 Query 1449 TTAATCCAAATTACGCCTCCACCTCCACCACCGCCTCCGTTTAGAGTTCCGCCGCTAAAA 1508 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 1401 TTAATCCAAATTACGCCTCCACCACCTCCACCGCCTCCATTTAGAGTTCCGCCGCTAAAA 1460 Query 1509 TAT-GTCGTGAGTGGTGATTTCGCGAAGATACGGAGTAATCAGAGCTCTAGATGTAGCTC 1567 | | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1461 T-TCGTCGTGAGTGGTGATTTCGCGAAAATACGGAGTAATCAGAGCTCTAGATGTAGCTC 1519 Query 1568 CCCTGAACGGGAAGTGTTCGATATCGGTTGGGGTCTAGAACTCACACAATCTGATGGCGG 1627 |||||| || |||||| |||| |||||||||||||||||||||||||||||||| | ||| Sbjct 1520 CCCTGAGCGAGAAGTGATCGACATCGGTTGGGGTCTAGAACTCACACAATCTGACGACGG 1579 Query 1628 AGTTGAGACTAAAGCTGCCGTCAGCGGCGGCGGTATGCCGGGATTCTGCCCAAGCCCGGA 1687 |||| | || ||||| |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1580 AGTTAAAACAAAAGCAGCCGTCGGCGGCGGCGGTATGCCGGGATTCTGTCCAAGCCCGGA 1639 Query 1688 CGTTGATACGAAAGCCGACAATTTCATTGCCAGGCTTAGAGATGAGTGGAGGCTCGATAA 1747 ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 1640 CGTTGATACGAAAGCCGACAACTTCATCGCCAGGCTTAGAGACGAGTGGAGGCTCGATAA 1699 Query 1748 GATCAATTCCGTGAATAGAAAGAGGTAACTGGGCTTT 1784 |||||| |||||||| ||||| |||||| |||||||| Sbjct 1700 GATCAACTCCGTGAACAGAAAAAGGTAAATGGGCTTT 1736 Score = 250 bits (135), Expect = 4e-65 Identities = 214/248 (86%), Gaps = 22/248 (9%) Strand=Plus/Plus Query 1919 TTTTATATTTGATTGGCGAAATTCGTTGTGATTTTAAGCAATGTGCAG-------CAAGG 1971 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1793 TTTTATATTTGATTGGC-AAATTCGTTGTGATTTTAAGCAATGTGCAGACATACACAAGG 1851 Query 1972 ACTC-GAGTTCAAAAGTTACGGGTAATATTGGCATTATTGGTATAGTTATTAGTGGTAAA 2030 |||| || || ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1852 ACTCGGA-TT--TAAGTTACGGGTAATATTGGCATTATCGGTATAGTTATTAGTGGTAAC 1908 Query 2031 TGGTTTCAAACTGGCTGGTTAGTTTTTTGGGTTTAACCGGTTGAGGGATTTTGCTTTGGT 2090 ||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 1909 TGG-TTCGAACTGGCTGGTTAG-TTTTTGGGTTTAACCGGTTGAGGGATTTTGGTTTGGT 1966 Query 2091 GTGTTTTGATTATTCGGTTTGAACTTTGGAGTGTCAGATGAAAACTCAATAACTTCGGTG 2150 |||||| | ||||| ||||| | |||||| |||||||| |||||||||| |||| Sbjct 1967 GTGTTTGGGGTATTCAGTTTG------G-AGTGTCTGATGAAAAGTCAATAACTTTGGTG 2019 Query 2151 TTGAATGT 2158 |||| ||| Sbjct 2020 TTGA-TGT 2026 Score = 145 bits (78), Expect = 2e-33 Identities = 86/90 (96%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 2188 ATGTACAATGTATGGCCCATTGATATGAAAATATAGTTGTGGGCTCTGAGTTTTGTTGGG 2247 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2023 ATGTATAATGTATGGCCCATTGATATGAAAATATAGTTGTGGGCTCTGAATTTTGTTGGG 2082 Query 2248 CCTACCTCTTGTGACCTTTCCCTCTCCCTT 2277 ||||||||||||||||||||| | |||||| Sbjct 2083 CCTACCTCTTGTGACCTTTCCATTTCCCTT 2112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85779231740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5