BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57070.1
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495801 jgi|Araly1|495801|fgenesh2_kg.8__1617__AT5G57070.1 2261 0.0
> Ahg495801 jgi|Araly1|495801|fgenesh2_kg.8__1617__AT5G57070.1
Length=2112
Score = 2261 bits (1224), Expect = 0.0
Identities = 1602/1777 (90%), Gaps = 55/1777 (3%)
Strand=Plus/Plus
Query 22 tctATTCAAAAATTATACCGGCAAAAATGGACGATCAACCGCCGCTGATCTGGCCCCAGT 81
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1 TCTATTCAAAAATTATACCGGCAAAAATGGACGATCAACCGCCGCTAATCTGGCCGCAGT 60
Query 82 TTGACTCTACCGGATATGCTCGCCGGAGATCATCGATTCCGGCGATTTTAGTTCCGGCGA 141
|||| |||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 61 TTGAATCTACCGGATATACTCACCGGAGATCACCGATTCCGGCGATGTTAGTTCCGGCGA 120
Query 142 TGATCGGAGTAACTTCAGCGGCGATTTTTCTTGTCTTTGTGACCTTCGTCG-TTCCTACG 200
|||||||||| | ||||||||||||||||||| | ||||||| ||| || | | ||| ||
Sbjct 121 TGATCGGAGTTATTTCAGCGGCGATTTTTCTTTTGTTTGTGAACTTTGT-GATCCCTCCG 179
Query 201 TTTCTCTCAGTCACATCTCAGATTCTTCAGCCAG-CTTCGGTGAAGCGAGGATGGGATTC 259
|||||||| ||||||||||||||||||||||| | | |||||||| ||||||||||||||
Sbjct 180 TTTCTCTCGGTCACATCTCAGATTCTTCAGCC-GTCATCGGTGAAACGAGGATGGGATTC 238
Query 260 GATAAACGTGGTTTTAGTGGTTTTCGCGATTCTCTGCGGCGTACTCGCTAGACGAAACGA 319
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 GATAAACGTCGTTTTAGTAGTTTTCGCGATTCTCTGCGGCGTACTCGCTAGACGTAACGA 298
Query 320 CGACGGATTGTCTTCGGAGTCTTTACACGGCGGAGAAGAAGAAGAAGTAGGAGGAGGAGC 379
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 299 TGACGGATTGTCGTCAGAGTCTTTACACGGCGGAGAAGAAGAAGAAGT---AGGAGGAGC 355
Query 380 CGTTACGAATGGTGAAATGACCGTCGGTGAGATTAGCAAAATCTCATCCTCGTCGTCGAC 439
|| |||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 356 TGTGACGAGTGGTGAAATGACCGTCGGTGAGATTAGCAAAATCTCATCTTCATCGTCGGC 415
Query 440 GGTTTCAGAGCAGTGGTTTGATGACGTGTATGATTCTGATAGGCTTAAGATCTATGAGAG 499
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 416 GGTTTCAGAGCAGTGGTTTGATGACGTGTATGACGCCGATAGGCTTAAGATCTATGAGAG 475
Query 500 TGTAAGTAGTCGAAGTTTTTCTCATGGATTACCGGTTACCGGGAA-TGTACCGTTGAGGC 558
||| |||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 476 TGTGAGTAGTCGGAGTTTCTCTCATGGATTACCGGTTACC-GGAACTGTACCGTTGAGGC 534
Query 559 GTAGTAGTAGCTCTTATCCTGATCTCAGACAAGGAGTTTTTAGAGAAACTGGCGATCGAC 618
||||| |||| || ||||||||||| |||||||||||||| || |||||||||||||| |
Sbjct 535 GTAGTTGTAGTTCGTATCCTGATCTGAGACAAGGAGTTTTCAGGGAAACTGGCGATCGCC 594
Query 619 GGTTCCGGTTTTATGATGATTTCGAAATCGATAAGTACCGATCGCAGGATTCGAGTTCTT 678
|||| |||||||| ||||| || |||| || | || || | | || ||||||
Sbjct 595 GGTTTCGGTTTTACGATGA-TT-----TCGA-AA-T-CC-AT---A--A-TC--GTTCTT 636
Query 679 ACCAACAATTTCAGAATCTTTCTAAAACT-GAAATCGAGGAAGAAGAATCTGAGCCTAAA 737
|| || |||||||||||| |||||||| | || ||| |||||||||||||||||||||
Sbjct 637 ACGAAGAATTTCAGAATCGTTCTAAAA-TAGAGATC---GAAGAAGAATCTGAGCCTAAA 692
Query 738 GAGATTCAGATTGATACGTTCGTTGTAAAACCGTCTTCTCCGCCGCAACAACCACCGGCA 797
||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 693 GAGATTCAGATTGATACATTCGTTGTAAAACCGTCTTCTCCGCCGCAACAATCATCGGCA 752
Query 798 --A-CACCACCACCTCCTCC-CC--CACCTCCGCCGGTTGAAG-TTCCGCAGAAACCGAG 850
| || |||| |||||||| || |||||||||||||||||| |||| |||||||||||
Sbjct 753 CCACCAACACCTCCTCCTCCTCCTGCACCTCCGCCGGTTGAAGTTTCC-CAGAAACCGAG 811
Query 851 AAGGACTCATCGTTCTGTTAGAAACAGAGATTTACAAGAAAACGCCAAACGCAGTGAGAC 910
|||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| |
Sbjct 812 AAGGACTCATCGCTCTGTTAGAAACAGAGATATACAAGAAAACGTAAAACGCAATGACAT 871
Query 911 TAAGTTTAAACGAACGTTTCAGCCTCCGCCGTCACCACCGCCTCCACCGCCCCCACCACC 970
||||||||||||| ||||||| ||| | || | || |||||||| ||||||||
Sbjct 872 TAAGTTTAAACGAGCGTTTCAACCT----C--CA--A-ATCCACCACCGCCTCCACCACC 922
Query 971 TCCTCAGCCGCTTATAGCCGCTACGCCACCAAGAAAACAAGGAACTCTTCAAAGAAGAAA 1030
||||| |||||| ||| |||| |||||||| ||||| |||| |||||||||| || ||||
Sbjct 923 TCCTCCGCCGCTGATAACCGCGACGCCACCGAGAAAGCAAGAAACTCTTCAACGACGAAA 982
Query 1031 GAGCAATGCGGCGAAAGAGATTAAAATGGTTTTCGCTTCTCTGTATAATCAAGGgaagaa 1090
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 983 GAGCAATGCGGCGAAAGAGATTAAAATGGTTTTCGCTTCTCTGTATAATCAAGGAAAGAG 1042
Query 1091 gaagaagaagcttcagaaatcgaagagaaaagagagaatcgaaTCTTCTCCGATGGTGGA 1150
|||||||||| |||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 1043 GAAGAAGAAGATTCAGAAATCAAAGAGAAAGGAGAGAATCGAATCTTCTCCGGCGGTGGT 1102
Query 1151 AGATGTA-ACGGAACCACCGCAATACCAATCGTTAATCCCACCACCGTCTCCGCCTCCTC 1209
|||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1103 GGATG-AGACGGAACCACCGCAATACCAATCCTTAATTCCACCACCGTCTCCGCCTCCTC 1161
Query 1210 CTCCACCACCACCTCCGCCTCC-ATTGCGATCGTCACAATCAGTATTCTACGGATTGTTC 1268
|||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 1162 CTCCACCACCTCCTCCACCTCCGCCT-CGATCGTCACAATCAGTATTCTACGGATTGTTT 1220
Query 1269 AAGAAAGGAGTTAAGAGCAACAAAAAGATTCATTCCGTTCCGGCGCCGCCTCCACCTCCA 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 AAGAAAGGAGTTAAGAGCAACAAAAAGATTCATTCCGTTCCGGCGCCGCCTCCACCTCCA 1280
Query 1329 CCGCCGAGATATACCCAATTTGATCCTCAGACACCACCACGGAGAGTGAAATCCGGAAGA 1388
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1281 CCGCCGAGACACACCCAATTTGATCCTCAGACACCACCACGGAGAGTGAACTCCGGAAGA 1340
Query 1389 CCTCCGCGTCCGACGAAACCGAAGAATTTCAATGAAGAGAACAACGGCCAAGGATCTCCG 1448
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1341 CCTCCGCGTCCGACGAAACCGACGAATTTCAACGAAGAGAACAACGGCCAAGGATCTCCG 1400
Query 1449 TTAATCCAAATTACGCCTCCACCTCCACCACCGCCTCCGTTTAGAGTTCCGCCGCTAAAA 1508
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1401 TTAATCCAAATTACGCCTCCACCACCTCCACCGCCTCCATTTAGAGTTCCGCCGCTAAAA 1460
Query 1509 TAT-GTCGTGAGTGGTGATTTCGCGAAGATACGGAGTAATCAGAGCTCTAGATGTAGCTC 1567
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1461 T-TCGTCGTGAGTGGTGATTTCGCGAAAATACGGAGTAATCAGAGCTCTAGATGTAGCTC 1519
Query 1568 CCCTGAACGGGAAGTGTTCGATATCGGTTGGGGTCTAGAACTCACACAATCTGATGGCGG 1627
|||||| || |||||| |||| |||||||||||||||||||||||||||||||| | |||
Sbjct 1520 CCCTGAGCGAGAAGTGATCGACATCGGTTGGGGTCTAGAACTCACACAATCTGACGACGG 1579
Query 1628 AGTTGAGACTAAAGCTGCCGTCAGCGGCGGCGGTATGCCGGGATTCTGCCCAAGCCCGGA 1687
|||| | || ||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1580 AGTTAAAACAAAAGCAGCCGTCGGCGGCGGCGGTATGCCGGGATTCTGTCCAAGCCCGGA 1639
Query 1688 CGTTGATACGAAAGCCGACAATTTCATTGCCAGGCTTAGAGATGAGTGGAGGCTCGATAA 1747
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1640 CGTTGATACGAAAGCCGACAACTTCATCGCCAGGCTTAGAGACGAGTGGAGGCTCGATAA 1699
Query 1748 GATCAATTCCGTGAATAGAAAGAGGTAACTGGGCTTT 1784
|||||| |||||||| ||||| |||||| ||||||||
Sbjct 1700 GATCAACTCCGTGAACAGAAAAAGGTAAATGGGCTTT 1736
Score = 250 bits (135), Expect = 4e-65
Identities = 214/248 (86%), Gaps = 22/248 (9%)
Strand=Plus/Plus
Query 1919 TTTTATATTTGATTGGCGAAATTCGTTGTGATTTTAAGCAATGTGCAG-------CAAGG 1971
||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1793 TTTTATATTTGATTGGC-AAATTCGTTGTGATTTTAAGCAATGTGCAGACATACACAAGG 1851
Query 1972 ACTC-GAGTTCAAAAGTTACGGGTAATATTGGCATTATTGGTATAGTTATTAGTGGTAAA 2030
|||| || || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1852 ACTCGGA-TT--TAAGTTACGGGTAATATTGGCATTATCGGTATAGTTATTAGTGGTAAC 1908
Query 2031 TGGTTTCAAACTGGCTGGTTAGTTTTTTGGGTTTAACCGGTTGAGGGATTTTGCTTTGGT 2090
||| ||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1909 TGG-TTCGAACTGGCTGGTTAG-TTTTTGGGTTTAACCGGTTGAGGGATTTTGGTTTGGT 1966
Query 2091 GTGTTTTGATTATTCGGTTTGAACTTTGGAGTGTCAGATGAAAACTCAATAACTTCGGTG 2150
|||||| | ||||| ||||| | |||||| |||||||| |||||||||| ||||
Sbjct 1967 GTGTTTGGGGTATTCAGTTTG------G-AGTGTCTGATGAAAAGTCAATAACTTTGGTG 2019
Query 2151 TTGAATGT 2158
|||| |||
Sbjct 2020 TTGA-TGT 2026
Score = 145 bits (78), Expect = 2e-33
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 2188 ATGTACAATGTATGGCCCATTGATATGAAAATATAGTTGTGGGCTCTGAGTTTTGTTGGG 2247
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2023 ATGTATAATGTATGGCCCATTGATATGAAAATATAGTTGTGGGCTCTGAATTTTGTTGGG 2082
Query 2248 CCTACCTCTTGTGACCTTTCCCTCTCCCTT 2277
||||||||||||||||||||| | ||||||
Sbjct 2083 CCTACCTCTTGTGACCTTTCCATTTCCCTT 2112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85779231740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5