BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57090.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950383 jgi|Araly1|950383|scaffold_802270.1 3273 0.0
> Ahg950383 jgi|Araly1|950383|scaffold_802270.1
Length=1987
Score = 3273 bits (1772), Expect = 0.0
Identities = 1918/1989 (96%), Gaps = 7/1989 (0%)
Strand=Plus/Plus
Query 51 tcGCCGGAAAAAGTAAATCAAAATGATCACCGGCAAAGACATGTACGATGTTTTAGCGGC 110
||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TCGCCGG-AAAA-TAAAGCAAAATGATCACCGGCAAAGACATGTACGACGTTTTAGCGGC 58
Query 111 TATGGTGCCGCTATACGTTGCTATGATATTAGCCTATGGTTCGGTACGGTGGTGGGGGAT 170
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 59 TATGGTGCCGCTATACGTTGCTATGATATTAGCCTACGGTTCGGTACGATGGTGGGGAAT 118
Query 171 ATTCACACCGGACCAATGTTCCGGTATAAACCGGTTCGTTGCGGTTTTCGCGGTTCCTCT 230
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 119 ATTTACACCGGACCAATGTTCCGGTATAAACCGGTTTGTTGCGGTTTTCGCAGTTCCTCT 178
Query 231 TCTCTCTTTCCATTTCATCTCCTCCAATGATCCTTATGCAATGAATTACCACTTCCTCGC 290
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTTTCTTTCCATTTCATCTCCTCCAATGATCCTTATGCAATGAATTACCACTTCCTCGC 238
Query 291 TGCTGATTCTCTTCAGAAAGTCGTTATCCTCGCCGCACTCTTTCTTTGGCAGGCGTTTAG 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CGCTGATTCTCTTCAGAAAGTCGTTATCCTCGCCGCACTCTTTCTTTGGCAGGCGTTTAG 298
Query 351 CCGCAGAGGAAGCCTAGAATGGATGATAACGCTCTTTTCACTATCAACACTGCCTAACAC 410
|||||||||||||||||||||||||||||||||||| || || |||||||| || |||||
Sbjct 299 CCGCAGAGGAAGCCTAGAATGGATGATAACGCTCTTCTCGCTCTCAACACTACCAAACAC 358
Query 411 GTTGGTAATGGGAATCCCATTGCTTAGGGCGATGTACGGAGACTTCTCCGGTAACCTAAT 470
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 359 GCTGGTAATGGGAATCCCATTGCTTCGGGCGATGTACGGGGACTTCTCCGGTAACCTAAT 418
Query 471 GGTGCAGATCGTGGTGCTTCAGAGCATCATATGGTATACATTAATGCTCTTCTTGTTTGA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGTGCAGATCGTGGTGCTTCAGAGCATCATATGGTATACATTAATGCTCTTCTTGTTTGA 478
Query 531 GTTCCGTGGGGCTAAGCTTCTCATCTCCGAGCAGTTCCCGGAGACGGCTGGTTCAATTAC 590
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTTCCGTGGTGCTAAGCTTCTGATCTCCGAGCAGTTCCCGGAGACGGCTGGTTCAATTAC 538
Query 591 TTCCTTCAGAGTTGACTCTGATGTTATCTCTCTTAATGGCCGTGAACCCCTCCAGACCGA 650
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 TTCCTTCCGAGTTGATTCTGATGTTATCTCTCTCAATGGCCGTGAACCCCTCCAGACCGA 598
Query 651 TGCGGAGATAGGAGACGACGGAAAGCTACACGTGGTGGTTCGAAGATCAAGTGCCGCCTC 710
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 TGCGGAGATAGGAGACGACGGAAAGCTACACGTGGTGGTTCGAAGATCAAGCGCCGCCTC 658
Query 711 ATCAATGATCTCTTCATTCAACAAATCTCACGGCGGAGGACTTAACTCCTCCATGATAAC 770
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATCAATGATCTCATCATTCAACAAATCTCACGGCGGAGGACTTAACTCCTCCATGATAAC 718
Query 771 GCCGCGAGCTTCAAATCTCACCGGCGTAGAGATTTACTCCGTTCAATCGTCACGAGAGCC 830
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCCACGAGCTTCAAATCTCACCGGCGTAGAGATTTACTCCGTTCAATCGTCACGAGAGCC 778
Query 831 GACGCCGAGAGCTTCTAGCTTTAATCAGACAGATTTCTACGCAATGTTTAACGCAAGCAA 890
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GACGCCGAGAGCTTCGAGCTTTAATCAGACAGATTTCTACGCAATGTTTAACGCAAGCAA 838
Query 891 AGCTCCAAGCCCTCGTCACGGTTACACTAATAGCTACGGCGGCGCTGGAGCTGGTCCAGG 950
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 839 AGCTCCGAGCCCTCGTCACGGTTACACTAATAGCTACGGAGGCGCCGGAGCTGGTCCCGG 898
Query 951 TGGAGATGTTTACTCACTTCAGTCTTCTAAAGGCGTGACGCCGAGAACGTCAAATTTTGA 1010
||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 899 TGGAGATGTTTACTCGCTTCAGTCTTCCAAAGGCGTGACGCCAAGAACGTCTAATTTTGA 958
Query 1011 TGAGGAAGTTATGAAGACGGCGAAGAAAGCAGGAAGAGGAGGCAGAAGTATGAGTGGGGA 1070
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 959 TGAGGAAGTTATGAAGACGGCAAAGAAAGCAGGAAGAGGAGGGAGAAGTATGAGTGGGGA 1018
Query 1071 ATTATACAACAATAATAGTGTTCCGTCGTACCCACCGCCGAACCCAATGTTCACGGGGTC 1130
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 ATTATACAACAATAATAGTGTTCCGTCGTACCCACCACCGAACCCAATGTTCACGGGGTC 1078
Query 1131 AACGAGTGGAGCAAGTGGAGTCAAGAAAAAGGAAAGTGGTGGCGGAGGAAGCGGT---GG 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1079 AACGAGTGGAGCAAGTGGAGTCAAGAAAAAGGAAAGTGGTGGCGGAGGAAGCGGTGGAGG 1138
Query 1188 CGGAGTAGGAGTAGGAGGACAAAACAAGGAGATGAACATGTTCGTGTGGAGTTCGAGTGC 1247
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGGAGGAGGAGTAGGAGGACAGAACAAGGAGATGAACATGTTCGTGTGGAGTTCGAGTGC 1198
Query 1248 TTCTCCGGTGTCGGAAGCCAACGCGAAGAATGCTATGACCAGAGGTTCTTCCACCGATGT 1307
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1199 TTCTCCGGTGTCGGAAGCCAACGCGAGGAATGCTATGACCAGAGGTTCCTCCACCGATGT 1258
Query 1308 ATCCACCGACCCTAAAGTTTCTATTCCTCCTCACGACAACCTCGCTACTAAAGCGATGCA 1367
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1259 ATCCACCGACCCTAAAGTTTCTATTCCTTCTCACGACAACCTCGCTTCTAAAGCGATGCA 1318
Query 1368 GAATCTGATAGAGAACATGTCACCGGGAAGAAAAGGGCATGTGGAAATGGACCAAGACGG 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GAATCTGATAGAGAACATGTCACCGGGAAGAAAAGGGCATGTGGAAATGGACCAAGACGG 1378
Query 1428 TAATAACGGGGGAAAGTCACCTTACATGGGCAAAAAAGGTAGCGACGTGGAAGACGGCGG 1487
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1379 TAATAACGAGGGAAAGTCACCTTACATGGGCAAAAAAGGTAGTGACGTGGAAGACGGCGG 1438
Query 1488 TCCCGGTCCTAGGAAACAGCAGATGCCGCCGGCGAGTGTGATGACGAGACTAATTCTGAT 1547
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1439 TCCTGGTCCGAGGAAACAGCAGATGCCGCCGGCGAGTGTGATGACGAGACTAATACTGAT 1498
Query 1548 AATGGTTTGGAGAAAACTCATTCGAAACCCTAACACTTACTCTAGTCTCTTTGGCCTTGC 1607
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1499 AATGGTTTGGAGAAAACTTATTAGAAACCCTAACACTTACTCTAGTCTCTTTGGCCTCGC 1558
Query 1608 TTGGTCCCTTGTCTCTTTCAAGTGGAATATAAAGATGCCAACGATAATGAGTGGATCGAT 1667
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TTGGTCCCTAGTTTCCTTCAAGTGGAATATAAAGATGCCAACGATAATGAGTGGATCGAT 1618
Query 1668 TTCGATATTATCTGATGCTGGTCTTGGAATGGCTATGTTTAGTCTTGGTCTATTTATGGC 1727
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TTCAATATTATCTGATGCTGGTCTTGGAATGGCTATGTTTAGTCTTGGTCTATTTATGGC 1678
Query 1728 ATTGCAACCAAAGATTATTGCGTGCGGAAAATCAGTAGCAGGGTTTGCGATGGCCGTAAG 1787
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1679 ATTGCAACCAAAGATTATTGCGTGCGGAAAGTCAGTAGCAGTGTTTGCGATGGCCGTAAG 1738
Query 1788 GTTCTTGACTGGACCAGCCGTGATCGCAGCCACCTCAATAGCAATTGGTATTCGAGGTGA 1847
||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1739 GTTCTTGACCGGACCGGCCGTGATCGCCGCCACCTCAATTGCAATTGGTATTCGAGGTGA 1798
Query 1848 TCTCCTCCATATCGCCATCGTTCAGGCTGCTCTTCCTCAAGGAATCGTTCCTTTTGTTTT 1907
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1799 TCTCCTCCATATCGCCATCGTTCAGGCTGCTCTCCCTCAAGGAATTGTTCCTTTTGTTTT 1858
Query 1908 CGCCAAAGAATATAACGTCCATCCTGATATTCTCAGCACTGCGGTTATATTCGGAATGCT 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 CGCCAAAGAATATAACGTCCATCCTGATATTCTCAGCACTGCGGTTATATTCGGAATGCT 1918
Query 1968 GGTTGCTTTGCCTGTAACAGTACTCTACTACGTTCTTTTGGGGCTTTAAGTTAT-TA-TC 2025
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1919 GGTTGCTTTGCCTGTAACAGTACTCTACTACGTTCTTTTGGGGCTTTAAGTTATATAATC 1978
Query 2026 AAAACGTAT 2034
|||||||||
Sbjct 1979 AAAACGTAT 1987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5