BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57100.1
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950385 jgi|Araly1|950385|scaffold_802272.1 1899 0.0
> Ahg950385 jgi|Araly1|950385|scaffold_802272.1
Length=1213
Score = 1899 bits (1028), Expect = 0.0
Identities = 1143/1198 (95%), Gaps = 9/1198 (1%)
Strand=Plus/Plus
Query 353 CAAATGTTACTGACACCTAAGATGTTTAGTTCTTGGCTTCGACAAGATGTGAAGAAGATC 412
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 18 CAAATGTTACTGACACCTAAAATGTTTAGTTCTTGGCTTCGAAAAGATGTGAAGAAGATT 77
Query 413 CTCAAACGCAAAGACAGTGATGCTGGTGAACGAGGAAAAGCA-TTGGAGGACTTGAGAGC 471
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 78 CTCAAACGCAAAGACAGTGATGCTGGTGAACGAGGAAAAGCACTT-GAGGACTTGAGAGC 136
Query 472 ATCGTTATTCAACAGATTCCGTTCACCGGAAACTCCAAAGAGACAGCAACAACAACAACA 531
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 137 ATCGTTATTCAACAGATTCCGTTCACCGGAAACTCCAAAAAGACAGCAACAACAACAACA 196
Query 532 TCGTATCTGTGGCCCAACTGTTGCTCTTACTTTCAATTTCGTTGTTGCTATTAGCATTAT 591
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 197 TCGTATCTGTGGCCCTACTGTTGCTCTTACTTTCAATTTCATTGTTGCTATTAGCATTAT 256
Query 592 CTTCATGAACAAATGGGTTCTTAAAAATATAGGCTTTGAGTTTCCAGTGTTCCTCACATT 651
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CTTCGTCAACAAATGGGTGCTTAAAAATATAGGCTTTGAGTTTCCAGTGTTCCTCACATT 316
Query 652 CATTCACTACATTGTAGCTTATCTACTAATGGCTCTTCTCAAATCCTTTTCGCTCCTTCC 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CATTCACTACATTGTAGCTTATCTACTAATGGCTCTTCTCAAATCCTTTTCGCTCCTTCC 376
Query 712 TGCTTCACCGCCTTCCACGAAATCATCGT-TGCTTCCGCTCTATACTCTTGGCATTGTAA 770
||||||||||| |||||||||||||||| | |||||||| || ||||||||||||||||
Sbjct 377 CGCTTCACCGCCCTCCACGAAATCATCGTCT-CTTCCGCTTTACACTCTTGGCATTGTAA 435
Query 771 TGTCACTCTCTACAGGACTAGCTAATGTTAGCCTTAAGTATAACAGTGTTGGATTCTACC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TGTCACTCTCTACAGGACTAGCTAATGTTAGCCTTAAGTATAACAGTGTTGGATTCTACC 495
Query 831 AGATGGCGAAAATTGCTGTTACGCCTTCTATCGTGTTTGCAGAGTTCTTGTGGTATAGAA 890
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 496 AGATGGCGAAAATCGCTGTTACGCCTTCTATCGTGTTTGCAGAGTTTTTGTGGTATAGAA 555
Query 891 AGAGAGTTTCTTTCATGAAGGTGGTAT-CACTTACAGTTGTATCTGTGGGAGTTGCGGTT 949
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 556 AGAGAGTTTCTTTCATGAAGGTGGT-TGCACTTACAGTTGTATCTGTGGGAGTTGCGGTT 614
Query 950 GCGACTGTAACAGATTTACAGTTTAGTCTGTTTGGTGCTTGTGTAGCATTCGCATGGATC 1009
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 615 GCGACTGTAACAGATTTACAGTTTAGTCTTTTTGGTGCTTGTGTAGCATTCGCATGGATC 674
Query 1010 ATACCAAGCGCAACTAACAAAATCTTGTGGTCTAATATGCAGCAACGAGAAAACTGGACT 1069
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 675 ATACCGAGCGCAACTAACAAAATCTTGTGGTCCAATATGCAACAACGAGAAAACTGGACT 734
Query 1070 GCTTTGGCGTTGATGTGGAAAACGACGCCAATCACTCTGTTGTTTCTTGTATCGATGATT 1129
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 735 GCTTTAGCGTTGATGTGGAAAACGACGCCAATTACTCTGTTGTTTCTTGTATCGATGATT 794
Query 1130 CCGTTCTTGGATCCGCCCGGTGCTCTATCGTTCAATTGGAGCTTAA-CCAACACATCTGC 1188
||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 795 CCGTTCTTGGATCCGCCAGGTGCTCTATCTTTCAATTGGAG-TTATGCCAACACATCTGC 853
Query 1189 CATTCTTGTTTCTGCTCTTCTCGGATTCTTTCTTCAATGGTCAGGAGCCTTAGCTCTAGG 1248
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 854 CATTCTTGTTTCCGCTCTTCTCGGATTCTTTCTTCAATGGTCAGGAGCCTTAGCTCTCGG 913
Query 1249 AGCAACTTCTGCAATTACGCATGTGGTGCTAGGACAGTTCAAGACTTGTGTCCTCCTCCT 1308
|||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| ||||| ||
Sbjct 914 AGCAACGTCTGCAATAACACATGTAGTGCTCGGACAATTCAAGACCTGTGTTCTCCTTCT 973
Query 1309 TGGAAACTACTACATTTTCGGGTCGAATAGTGGTTTCATTAGCGTTGGCGGTGCGTTTGT 1368
|||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 974 TGGAAACTACTACATTTTCGGGTCGAATAGCGGTTTGATTAGCGTTTGCGGTGCGTTTGT 1033
Query 1369 GGCGATTATGGGAACTTCGTTATATACATACCTTAACACGAGAGGTCAATCTCTTAAAAC 1428
|||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 1034 GGCGATTATGGGGACTTCGTTATATACTTACCTTAACACGAGAGGTCCATCTCTTAAAGC 1093
Query 1429 TTCGTCTTCTTCTTCTGCTCTCTCGGAGAAGAAGTCAAGATTCAGTGATCTTAAGGATGA 1488
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 1094 TTCGTCTTCTTCTTCTGCTCTCTCAGACAAGAAGTCAAGATTTAGTGATCTTAAGGATGA 1153
Query 1489 TGACAAGAATCTTGAACCTTACGGCTCCGAAGCTGTCTAGTCTAGGCTAACTTTTGTA 1546
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1154 TGACAAGAATCTTGAACCTTACGGCTCCGAAGCTGTCTAGTCTAGTCTAACTTT-GTA 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67153101935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5