BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57120.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495806 jgi|Araly1|495806|fgenesh2_kg.8__1622__AT5G57120.1 1024 0.0
> Ahg495806 jgi|Araly1|495806|fgenesh2_kg.8__1622__AT5G57120.1
Length=1183
Score = 1024 bits (554), Expect = 0.0
Identities = 783/884 (89%), Gaps = 53/884 (6%)
Strand=Plus/Plus
Query 464 TGAAGATGGAGTTaaggagaagaagaagaagaaggaaactaaggtgaaagtaaccgagga 523
|||||| |||| ||| |||||||||||||||||||||| |||||| | ||||| || ||
Sbjct 339 TGAAGAAGGAG--AAGAAGAAGAAGAAGAAGAAGGAAACAAAGGTGGAGGTAACTGAAGA 396
Query 524 ggagaaggtcaaagagaCTGATGCTGTGATTGAAGATGGAGTTAAGGAGAAAAAGAAGAA 583
||||||||| ||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 397 GGAGAAGGTTAAAGAGACTGATGCTAAGATCGATGATGGAGTTAAGGAGAAAAAGAAGAA 456
Query 584 GAAGAGCAAGTCGAAATCTGTTGAGGCTGATGATGATAAGGAGAAAGTTTCAAAGAAAAG 643
||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 457 GAAAAACAAGTCGAAATCTGTTGAGGCTGGTGATGATAAGGAGAAAGTTTCCAAGAAAAG 516
Query 644 GAAAAGATCAGAGCCTGAAGAGACTAAAGAAGAGACTGAGGATGATGATGAAGAATCAAA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GAAAAGATCAGAGCCTGAAGAGACTAAAGAAGAGACTGAGGATGATGATGAAGAATCAAA 576
Query 704 ACGTAGGAAGAAGGAAGAGAATGTAGTTGAAAACGATGAGGGTGTTCAAGAGACACCTGT 763
||||||||||||||||||||| | ||| | | | | | | ||||||||
Sbjct 577 ACGTAGGAAGAAGGAAGAGAA--T-GTT-----C----A--G-G----A-A-ACACCTGT 615
Query 764 TAAGGAGACTGAAACTAAGGAAAACGGAAATGCTGAGAAAAGTGAGAC-AAAGTCAACAA 822
|||||||||||||||||||||||| ||||||| ||||||||| | || ||| |||||||
Sbjct 616 TAAGGAGACTGAAACTAAGGAAAATGGAAATGTTGAGAAAAGCCAAACGAAA-TCAACAA 674
Query 823 ATCAGAAGTCAGGAAAAGGGCTTTCTAACTCAAAAGAGCCGAAGAAACCGTTTCAGAGGG 882
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 ATCAGAAGTCTGGAAAAGGGCTTTCTAACTCAAAAGAGCCGAAGAAACCGTTTCAGAGGG 734
Query 883 TGAACGTTGACGAAATTGTGTACACTGAGA-ATAGCAACTCGTACTATTCAAAGGGTGGT 941
||||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||
Sbjct 735 TGAACGTTGACGAAATTGTGTTCACTGA-ACATAGCAACTCGTACAATTCAAAGCATGGT 793
Query 942 GCTGAA-ATTGGCTATGGTCTTAAAGCTCAAGAGGTTCTCGGGCAAGTGAGAGGAAGGGA 1000
|||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 794 GCTGAATAT-GGCTATGGTCTTAAAGCTCAAGAGGTTCTCGGGCAAGTGAAAGGAAGGGA 852
Query 1001 TTTCCGACATGAGAAGACGAAGAAGAAACGAGGAAGCTACAGAGGAGGATTGATCGATCA 1060
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 853 TTTCCGACATGAGAAGACGAAGAAGAAACGAGGAAGCTACAGAGGAGGATCGATCGATCT 912
Query 1061 -AGAGTCACATTCGACTAAGTTTAATAACTCAGACG-ACGAA---GAATGATTGATAAGC 1115
| |||| ||||| ||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 913 TA-AGTCTCATTCAACTAAGTTTCCTAACTCAGACTCA-GAAAATGAATGATTGATAAGC 970
Query 1116 AGACAACACTGCctttttgacattgcttcgtttcgatttatctttttcttttcttttgct 1175
| |||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||
Sbjct 971 AAACAACACTGCCTTTTTCACATTGCTTCTTTTTTATTTATCTTTTTATTTTCTTTTGCT 1030
Query 1176 ttgatcatttcAATACCCGTAATAGGGCTCAAGTTTTGTGTCTGTGCACTCCTTTGATAC 1235
|||||||||||||||||| ||| ||||||||||||||||||| || | || || | ||
Sbjct 1031 TTGATCATTTCAATACCC-TAAAAGGGCTCAAGTTTTGTGTCCGTTAA-TC-TT-G-TA- 1084
Query 1236 TTATATGAACATGATTCAGTTTCAGTTTCTTGTTCACTAAATTGACTTCAAAGATTCTTG 1295
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 --A---GAACATGATTCAGTTTCAGTTTCTTGTTCACTAAATTGACTTCAAAGATTCTTG 1139
Query 1296 TTTTAATTTCTGT-G--T--G-GCATAGAAAATGAGAATTTGCT 1333
|||||||| |||| | | | || | ||||||||||| |||||
Sbjct 1140 TTTTAATTACTGTTGAGTTTGAGCTTTGAAAATGAGAAATTGCT 1183
Score = 656 bits (355), Expect = 0.0
Identities = 428/463 (92%), Gaps = 5/463 (1%)
Strand=Plus/Plus
Query 35 AACCCTAGCAGCAGAGTCTTCCGTAAACCCAGCTCTCTTAGCTCTCACGCCTCGTCAATT 94
|||||||||||||||| || || |||||||||||||||||||||||| | ||||||||||
Sbjct 1 AACCCTAGCAGCAGAGCCTCCCTTAAACCCAGCTCTCTTAGCTCTCAAGGCTCGTCAATT 60
Query 95 GTTGACCTGTAGGA-TAGATATGGGCAACGAGAGCAAAACCTCGGCTTTGGAATCGGAGC 153
||||| || || || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GTTGATCTCTA-GACCAGATATGGGCAACGAGAGCAAAACCTCGACTTTGGAATCGGAGC 119
Query 154 AGAAGGCTCTTCTTCTCCGTTCGGTAGCTCAATACTTGGAACGATGTGGTTTTTCCAAAT 213
|||||||||||||||| |||||| |||||||||||||||| | |||||| ||||||||||
Sbjct 120 AGAAGGCTCTTCTTCTTCGTTCGATAGCTCAATACTTGGAGCTATGTGGGTTTTCCAAAT 179
Query 214 GCTTCAAGAAATTGCTCTCCGAAGCTGAAATCGAGAAGAAGGAATTGAACACTAGTTTAC 273
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTTCAAGAAATTTCTCTCCGAAGCTGAAATCGAGAAGAAGGAATTGAACACTAGTTTAC 239
Query 274 CTGATTTAGAGGAAATTTTCAGCGAGTTTTTGAACAAGAGAGATCATGAAGCTGCAGCTA 333
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 CTGATTTAGAGGATATTTTCAGCGAGTTTTTGAAGAAGAGAGATCATGAAGCTGCAGCT- 298
Query 334 ATGGAAATACCGAGGCGAATGTAGTGgaagctgtagagaatgtaaagaaggataagaaga 393
|||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 299 --GGAAATACAGAGGCGAATGTAGTGGAAGGTGTAGAGAATGTGAAGAAGGAGAAGAAGA 356
Query 394 agaagaagaacaaggaaacaaaggtggaggtaactgaggaagagaaggtcaaagagaCTG 453
|||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 357 AGAAGAAGAAGAAGGAAACAAAGGTGGAGGTAACTGAAGAGGAGAAGGTTAAAGAGACTG 416
Query 454 ATGCTGTGATTGAAGATGGAGTTaaggagaagaagaagaagaa 496
||||| ||| || ||||||||||||||||| |||||||||||
Sbjct 417 ATGCTAAGATCGATGATGGAGTTAAGGAGAAAAAGAAGAAGAA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5