BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57123.1
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495807 jgi|Araly1|495807|fgenesh2_kg.8__1623__AT5G57123.1 752 0.0
> Ahg495807 jgi|Araly1|495807|fgenesh2_kg.8__1623__AT5G57123.1
Length=664
Score = 752 bits (407), Expect = 0.0
Identities = 494/534 (93%), Gaps = 13/534 (2%)
Strand=Plus/Plus
Query 210 AAGACTCAGATCTGAGAGAGAAAA--ACAATGTGTTTGGTGTGTTTATGTGATGAGGAAG 267
|||| |||||||||||| | |||| ||||||||| |||||||||||||||| |||||||
Sbjct 134 AAGAATCAGATCTGAGAAAAAAAACTACAATGTGTCTGGTGTGTTTATGTGACGAGGAAG 193
Query 268 AGACAGAGTTAGGGAGACAACAAGCACCTGGATCGTGTCCTTATTGTGGAGGTAAAGTGC 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 AGACAGAGTTAGGGAGACAACAAGCACCTGGATCGTGTCCTTATTGTGGAGGTAAAGTGC 253
Query 328 AAATGCTTGATGTCGAAAGAAAATGGATGTTCTGTTTCGTTCCTCTTTGTTTCAAGATCA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 AAATGCTTGATGTCGAAAGAAAATGGATGTTCTGTTTCGTTCCTCTTTGTTTCAAGATCA 313
Query 388 AGAGGAAGTACTCGTGTTCTTCTTGTGATCGTCGTCTCGTTTTGTATCATTAAAATTATA 447
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 314 AGAGGAAGTACTTGTGTTCTTCTTGCGATCGTCGTCTCGTTTTGTATCATTAAAATAATA 373
Query 448 ATATTGTAGttt-ttttt--ATTAATTTCCTTTCTTAATAATTAAAGTCAATTAATTAGC 504
|||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||
Sbjct 374 ATATTGTAGTTTCTTTTTTTATTAATGTCCTTTCTTAATAATTAAAGTAAATTAATTAGC 433
Query 505 GTTTTAATCAAGGGAAATAATTTTAGTCGGTGGTATTTGGTACGGTTAGTATATCTAGTC 564
|||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 434 GTTTTAATCAAGGGAAATAATTTTAGTCGGTGGTTTTTGGTATGGTTAGTATTTCTAGTC 493
Query 565 GTGTAAACCGACATTGATCTTTTAGAAATGTTATAGAACTATCTCGATTCAACCTTAATG 624
||||||||||||||||||||||||||| |||| ||||||| ||||||||||| || |||
Sbjct 494 GTGTAAACCGACATTGATCTTTTAGAAGTGTTGTAGAACTCTCTCGATTCAAATTTGATG 553
Query 625 TACTTTTTCTTTTGTCTTCGAGTGTCTTCTTAAGTCGGTCCAAATTAAAA-AGTGTTTCA 683
||||||| |||| |||||| |||| ||||| |||||| |||||||||||| | | || ||
Sbjct 554 TACTTTTCCTTT-GTCTTCAAGTGGCTTCTCAAGTCGATCCAAATTAAAATA-TATT-CA 610
Query 684 A-AT-ATATGT--AATCGTGTTGTTAGTGTAATGATGAATCTCAAGTTTGGTGT 733
| || |||||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 611 ATATTATATGTGTAATTGTGTTGTTAATGTAATGATGAATCTCAAGTTTGGTGT 664
Score = 159 bits (86), Expect = 2e-38
Identities = 105/114 (92%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 42 TTCAATATAAGCCTCCGCAAGAAGTTTCTCAGAAACAGTTTTCTCAAGAAAATAATTGAA 101
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 TTCAATATAAGCCTCCGCAAGAAGTTTCTCAGAAACAGTTTTCTCAAGAAAAGACTTGAA 60
Query 102 TTTTCCTCTAAAG-CTCACAAAATTCTCTGATCTTCCAAACAAAATAAACCCAT 154
|||||||| ||| | ||||||||||||||| || ||||||||| |||||||||
Sbjct 61 TTTTCCTCAAAATAC-CACAAAATTCTCTGACCTACCAAACAAATTAAACCCAT 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26991025236
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5