BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57130.1
Length=3571
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950392 jgi|Araly1|950392|scaffold_802279.1 1059 0.0
> Ahg950392 jgi|Araly1|950392|scaffold_802279.1
Length=1408
Score = 1059 bits (573), Expect = 0.0
Identities = 752/836 (90%), Gaps = 22/836 (3%)
Strand=Plus/Plus
Query 2028 ACAGGACAATTGA-GTATGATGGG--C-AACTATC-CCTATGGCTTGCCTTATGGATCAT 2082
||||||||||| | || | ||||| | ||||| | | ||||||||||||||||||||||
Sbjct 3 ACAGGACAATT-AGGTTTCATGGGCACAAACTA-CTCATATGGCTTGCCTTATGGATCAT 60
Query 2083 CACATGAGTCTTCGAAATCAACT-TCTTTGATTGATTCATTAGGTTTGAAGCCGAATCAG 2141
|| | ||||| |||| ||| | | ||||||||||||| || ||||| |||| ||||||
Sbjct 61 CAAACGAGTCATCGAGATC-AGTACCTTTGATTGATTCCTTGGGTTTAAAGCAAAATCAG 119
Query 2142 CGAGCCACAAACTCGATTGCTAAATTCAGACGTCAGAATTCTTGCACCATTGAGTTTGAT 2201
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAGTCACGAACTCGATTGCCAAATTCAGACGTCAGAATTCTTGCACCATTGAGTTTGAT 179
Query 2202 TTGGGTGGAAACGAACATGAGAAGGGTGAGTCGATCAATGAAGCTGAAGATGACAAGGGA 2261
||||||||||||||| ||||||||||||| | | |||||||| |||||||||||
Sbjct 180 TTGGGTGGAAACGAATATGAGAAGGGTGA---G----A--AAGCTGAAAATGACAAGGGA 230
Query 2262 AATGAGACGGTCACTCTTGATTTGGGGCGTTCTCTGTTTCGATCAGATTCCGTAACAGAT 2321
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 231 AATGAGACAATCACTCTTGATTTGGGGCGTTCTCTGTTTCGATCAGATTCCCTAACAGAG 290
Query 2322 ACGAGACTGAAGCTCAGCGCTTTGGTCAAAGCTTTGGAGGAGAGTATTCCAAGGCAAACT 2381
|| | | |||| |||| | ||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 291 ACCAAAAAGAAGATCAGTGATTTGGTCAAAGTTTTGGAGGAGAGTCTTCCATGGCAAACT 350
Query 2382 GTGACAATGCGTCTTATCGCTGAGAGTTTAATGGATTGCGTGTCAAAGAAGAAAGACAG- 2440
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 351 GTGACAATGCGTCTAATTGCTGAGAGTTTAATGGATTGCGTGTCAAAGAAGAAAGAC-GC 409
Query 2441 TTGGATTATAATCGAGGGCAGGGACACAACCGCGAAGAGGAGAGTAGCTCGTACTGTATC 2500
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 410 TTGGATTATGATCGAGGGCAGGGACATAGCCGCGAAGAGGAGAGTAGCTCGTACTGTATC 469
Query 2501 TGAATCTGTTTTCGGATCTTTCGAGTCTCTGGTTCATATTGACCTTAAGAAGAAAGGAAA 2560
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 470 TGAATCTGTTTTCGGATCTATCGAGTCTCTGGTTCATATTGACCTTAAGAAGAAAGGCAA 529
Query 2561 CGAGTCAAAGGCCAGCCCGGCAACGCTACTTGCTTATGAATTGAAGAACCCTGAGAAGGT 2620
|||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 530 CGAGTCAAAGACCAGCCCGGAAACGCTACTTGCTTGTGAATTGAAGAACCCTGAGAAGGT 589
Query 2621 TGTGTTCTTGATTGAAGACATTGATTTGGCAGATTCCCGCTTCTTGAAACTCCTTGCTGA 2680
||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 590 TGTATTCTTGATTGAGGACATCGATTTGGCGGATTCCCGTTTCTTGAAACTCCTTGCTGA 649
Query 2681 TCGGTTTGAGGACAAACGGAGGATTAAAACCGG-TATCGATCATCGCCAAGCCATCTTTA 2739
||||||||||| | ||||||| ||||||||| | | |||||||||||||| |||||||
Sbjct 650 CCGGTTTGAGGAGAGGCGGAGGAGTAAAACCGGCTTT-GATCATCGCCAAGCGATCTTTA 708
Query 2740 TTTTGACAAAGGAGGATTCAAGGAATGTGAGAAACAGAGACTCTGTTTTGCAAATTGGTT 2799
||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 709 TTTTGACGAAGGAGGATTCAAGCAATGCAAGAAACAGAGACTCTGTTTTACAAATTGGTT 768
Query 2800 TGGAGATCACGGCACAGAGTCCAGGGAAAAAGAGAAAACCCGAATCGGATTTATCG 2855
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 769 TGGAGATCACGGCACAGAGTCCGGGGAAAAAGAGAAAACCCGAGTCGGATTTATCG 824
Score = 791 bits (428), Expect = 0.0
Identities = 526/570 (92%), Gaps = 20/570 (4%)
Strand=Plus/Plus
Query 2855 GATCGAGAATGGGTTTTGGATGAAGAAGGAAGTGTGCTCTAGGCAATCGAGTTTCAATAG 2914
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 857 GATCGAGAATGGGTTTTGGATCAAGAAGGAAGTGTGCTCTAGGCAATCGAGTTTCAATAG 916
Query 2915 CTCTTACCTCGACCTGAACATAAAAGCTGAAGACGAAGAAGTAGAAGGTGAGATCAGTCC 2974
|||||| |||||||||||||||||||||| | | |||| | |||||| |||||||||||
Sbjct 917 CTCTTATCTCGACCTGAACATAAAAGCTG-A-A-GAAG-A--AGAAGGAGAGATCAGTCC 970
Query 2975 AATTTCAAGCGATTTAACAGGAGAGGAGGAGACAGAGTTCTCCTCTTCAAGCAACTTTCT 3034
||||||||||||||||| |||||||||||||||||| | | |||||| ||||||||| |
Sbjct 971 GATTTCAAGCGATTTAACCGGAGAGGAGGAGACAGAG-T-T-CTCTTCCAGCAACTTTTT 1027
Query 3035 AAACCGGATTCAAAACCGGTTTGTCCTAAA-CAGGTCATGTGAACCAGGTATCGAAAAAG 3093
|||||| ||||||||||||||||||||||| || |||||| ||||||||||| |||||||
Sbjct 1028 AAACCGAATTCAAAACCGGTTTGTCCTAAACCA-GTCATGCGAACCAGGTATAGAAAAAG 1086
Query 3094 GTATGATAACAGCAGCTTTCAGGGAGATTTTTCCTGAGAGGGAA-GAAGGAGGCGGAGTT 3152
|||||||||||||||||||||||| ||||||| ||| ||| |||||||| ||||||
Sbjct 1087 CCATGATAACAGCAGCTTTCAGGGAGGTTTTTCC--AGA--GAAGGAAGGAGGTGGAGTT 1142
Query 3153 AGGTTTAGCGTGGAGGACAAGTTAGTAGAGGAGCTTTACGGGATTCAAAACGGTGCGTTT 3212
||||||||||||||||| ||||||| |||||||| | |||| |||||||||||||||||
Sbjct 1143 AGGTTTAGCGTGGAGGATAAGTTAGCGGAGGAGCTATGCGGGGTTCAAAACGGTGCGTTT 1202
Query 3213 GAAAGATGGTTAAAGGAGGTTTTTCAAACGGGGTTACTAACGGTTAAAAAGGGAGGGAAA 3272
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1203 GAAAGTTGGTTAAAGGAGGTTTTTCAAACGGGGTTACTAACGGTTAAAAAGGGCGGGAAA 1262
Query 3273 AAGGATACGGGTGTAATTAGGATGGTGTTTGGGGGTATAGTTGACAACAAAGGATATGGT 3332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 AAGGATACGGGTGTAATTAGGATGGTGTTTGGGGGTATAGTTGACAACAAAGGATATGGT 1322
Query 3333 GGGGGTGTTGGTGGGTACATGGCTACATTTCTTCCGAACAAAGTCCAAGTTTCCAAGTTC 3392
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1323 GGGGGTGTTGGTGGGTACATGGGTACATTTCTTCCGAACAAAGTCCAAGTTTCCAAGTTC 1382
Query 3393 GAGTAGTAGAATCTTTCGGTTAAAtttctt 3422
|||||| | |||||||||| ||||||||
Sbjct 1383 GAGTAG-A---TCTTTCGGTTTAATTTCTT 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134876038712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5