BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57140.1
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332011 jgi|Araly1|332011|fgenesh1_pm.C_scaffold_8001354 1637 0.0
> Ahg332011 jgi|Araly1|332011|fgenesh1_pm.C_scaffold_8001354
Length=1203
Score = 1637 bits (886), Expect = 0.0
Identities = 1102/1206 (91%), Gaps = 15/1206 (1%)
Strand=Plus/Plus
Query 47 ATGAATTGTTCAATCGGAAACTGGAAACACACTGTTCTCTACTTAACCCTAATCGTATCT 106
||||| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAATCTTCAATCGGAAACTGGAAGCACACTGTTCTCTACTTAACCCTAATCATATCT 60
Query 107 CTTCTCTACTTCATCGAATCCCTAATCTCACACAAATTACACATCAACTACAACAAAATC 166
||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 61 CTTGTCTACTTCATCGAATTACTAATCTCACACAAATTACACATCAACCATAACAAAATC 120
Query 167 CGCCTGAAAAGATCTCCGAATCTTCCTCTACGATTCCGTGACGATGGCACATTCAAAATC 226
| ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 121 CACCTGAAAAGGTCTCCGAATCTTCCTCTCCGATTCCGTGACGATGGCACCTTCAAAATC 180
Query 227 CTCCAGGTCGCGGATATGCATTTCGGAATGGGGATGATTACTCGATGTAGAGATGTGTTG 286
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 181 CTCCAGGTCGCTGATATGCATTTCGGAATGGGGATTATTACTCGGTGTAGAGATGTGTTG 240
Query 287 GATTCAGAATTCGAATATTGTTCTGATCTCAACACTACTCGGTTTCTTCGTAGGATGATT 346
||||| |||||||| |||||||||||||| || |||||||||||| |||| |||||||||
Sbjct 241 GATTCTGAATTCGATTATTGTTCTGATCTTAATACTACTCGGTTTATTCGGAGGATGATT 300
Query 347 GAATCTGAGAGACCTGATTTGATTGCTTTCACTGGGGATAATATATTTGGATCAAGTACT 406
||| ||||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct 301 GAAGCTGAGAGACCTGATTTGATCGCTTTTACGGGGGATAACATATTTGGATCAAGTACC 360
Query 407 ACTGATGCAGCTGAATCTCTTCTTGAAGCTATTGGTCCAGCTATTGAATATGGAATCCCA 466
||||| || |||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 361 ACTGACGCGGCTGAATCTCTTATTCAAGCTATTGGTCTAGCTATTGAATATGGAATCCCA 420
Query 467 TGGGCTGCTGTTTTAGGAAATCATGACCATGAATCTACTTTGAACCGTTTAGAATTGATG 526
|||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct 421 TGGGCTGCCATTTTAGGAAATCATGACCAAGAATCTACTTTGAACCGTGAAGAGTTGATG 480
Query 527 ACTTTCCTTTCTCTTATGGATTTTTCTGTTTCTCAAATCAATCCACTTGTTGAAGATGA- 585
||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 481 ACTTTCCTTTCTCTTATGGATTTTTCTGTCTCTCAAGTCAATCCACCTGTTGAAGATGAC 540
Query 586 ---AA-C---T-AAAGGAGATACAATGAGGTTAATCGATGGATTTGGGAATTACCGAGTG 637
|| | | ||||||| ||||||| ||||||||||| |||||||||||||| |
Sbjct 541 TCTAATCAAATCAAAGGAGGCGCAATGAGATTAATCGATGGCTTTGGGAATTACCGCCTC 600
Query 638 AGAGTTTACGGTGCTCCTGGTTCTGTG-TTGGCGAATAGTACCGTCTTTGATCTCTTCTT 696
||||| ||||||||||||||||| ||| || || ||||| || |||||||| ||||||||
Sbjct 601 AGAGTGTACGGTGCTCCTGGTTCCGTGCTT-GCTAATAGCACTGTCTTTGACCTCTTCTT 659
Query 697 TTTTGATAGTGGAGATAGAGAAATAGTACAAGGTAAACGAACTTATGGATGGATCAAGGA 756
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TTTTGACAGTGGAGATAGAGAAATAGTCCAAGGTAAACGAACTTATGGATGGATCAAGGA 719
Query 757 ATCACAACTTCGTTGGCTTCAAGATACTTCTATACAGGGTCATAGCCAGAGGATTCAT-G 815
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | |
Sbjct 720 ATCACAACTTCGTTGGCTTCAAGATACTTCTATACAGGTTCATAACCAGAGGATTC-TCG 778
Query 816 TTAATCCGCCAGCGTTAGCCTTCTTCCACATCCCAATATTGGAAGTTCGGGAACTGTGGT 875
||||||||||||||||||||||||||||||||| || || ||||| || || |||||||
Sbjct 779 GTAATCCGCCAGCGTTAGCCTTCTTCCACATCCCTATCTTAGAAGTACGTGATCTGTGGT 838
Query 876 ACACGCCCTTTATCGGTCAGTTTCAGGAAGGAGTGGCATGCTCTATTGTTCAGTCTGGAG 935
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 839 ACACGCCCTTTATCGGCCAGTTTCAGGAAGGAGTGGCATGCTCCATTGTTCAGTCAGGAG 898
Query 936 TCTTACAGACATTTGTGTCAATGGGAAATGTAAAAGCTGCGTTCATGGGACACGACCATG 995
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCTTACAGACCTTTGTGTCCTTGGGAAATGTAAAAGCTGCGTTCATGGGACACGACCATG 958
Query 996 TTAATGATTTCTGTGGAACTCTAAAAGGGGTATGGTTTTGTTACGGTGGAGGATTCGGAT 1055
| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 959 TCAATGATTTCTGTGGAAATCTAAAAGGGATATGGTTTTGTTACGGTGGAGGATTCGGAT 1018
Query 1056 ACCATGCTTATGGACGACCAAATTGGCATAGAAGAGCAAGAGTGATAGAAGCTAAGCTTG 1115
|||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 1019 ACCATGCTTATGGAAGACCAAATTGGCACAGAAGAGCAAGAGTGATAGAGGCTAAGCTAG 1078
Query 1116 GGAAAGGAAGAGACACATGGGA-AGGAATCAAACTTATCAAGACTTGGAAACGTCTTGAC 1174
| |||||||||||||||||| | ||||||| ||||||||||||| ||||||||||| ||
Sbjct 1079 GAAAAGGAAGAGACACATGG-ACAGGAATCGAACTTATCAAGACGTGGAAACGTCTAGAT 1137
Query 1175 GACGAATACTTGAGCAAAATAGACGAACAAGTCTTATGGGAAACTTCCGACTCATTTCTG 1234
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1138 GACCAAGACTTGAGCAAAATAGACGAACAAGTCCTATGGGAAACTTCCGACTCATTTCTG 1197
Query 1235 AAGTGA 1240
||||||
Sbjct 1198 AAGTGA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46319344155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5