BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57150.4
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495811 jgi|Araly1|495811|fgenesh2_kg.8__1627__AT5G57150.1 1101 0.0
> Ahg495811 jgi|Araly1|495811|fgenesh2_kg.8__1627__AT5G57150.1
Length=761
Score = 1101 bits (596), Expect = 0.0
Identities = 634/652 (97%), Gaps = 3/652 (0%)
Strand=Plus/Plus
Query 178 TTGTCGGAAAATGGAGGATATCGTCGACCAAGAATTAAGCAATTACTGGGAACCTAGCTC 237
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 TTGTAGGAAAATGGAGGATATCGTCGACCAAGAATTCAGCAATTACTGGGAACCTAACTC 60
Query 238 CTTCCTCCAAAACGAAGACTTCGAATACGACAGAAGCTGGCCTTTGGAAGAAGCCATTTC 297
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 61 CTTCCTCCAAAACGAAGACTTCGAATACGAC---AGCTGGCCTTTGGAGGAAGCTATTTC 117
Query 298 TGGGTCGTATGATTCGAGTTCGCCGGATGGAGCTGCTTCGTCGCCGGCTTCTAAGAATAT 357
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 118 TGGGTCGTATGATTCGAGTTCGCCGGATGGGGCTGCTTCGTCGCCGGCTTCTAAGAATAT 177
Query 358 TGTGTCGGAGAGAAACAGAAGACAGAAACTTAACCAGAGACTCTTCGCTCTTCGATCAGT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGTGTCGGAGAGAAACAGAAGACAGAAACTTAACCAGAGACTCTTCGCTCTTCGATCAGT 237
Query 418 TGTTCCCAATATCACTAAGATGGATAAAGCCTCAATAATCAAAGATGCTATTAGTTACAT 477
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 TGTTCCCAACATCACTAAGATGGATAAAGCATCAATAATCAAAGATGCTATTAGTTACAT 297
Query 478 AGAAGGATTACAATATGAAGAAAAGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTAC 537
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 ACAAGGATTACAATATGAAGAAGGGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTAC 357
Query 538 ACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTTGTTCCTGTCAC 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 358 ACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTAGTTCCTGTCAC 417
Query 598 ATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGA 477
Query 658 ATTGAAGGTAACATTCATGGGAGAGAGGACAATGGTGGTGAGTGTAACATGTAATAAGAG 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTTGAAGGTAACATTCATGGGAGAGAGGACAATGGTGGTGAGTGTAACATGTAATAAGAG 537
Query 718 GACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCATTGAATCTCAAAATCCTCAC 777
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 538 GACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCTTTGAATCTCAAAATCCTCAC 597
Query 778 TTCCAATCTCACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAG 829
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCCAATCTTACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAG 649
Score = 193 bits (104), Expect = 3e-48
Identities = 110/113 (97%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 948 GGCGGATGAAGAAGAACAAGAGGTGTTGCGGTTAAAAATAGAAACAGGAATAGGAGCTTA 1007
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 649 GGCGGATGAGGAAGAACAAGAGGTGTTGCGGTTAAGAATAGAAACAGGAATAGGAGCTTA 708
Query 1008 TAATGAAACTCAAAGCCCTACTTTGAGCATCGACTCTCTTTACTAATAATACt 1060
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 709 TAATGAAACTCAAAGCCCCACTTTGAGCATCGACTCTCTTTACTAATAATACT 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5