BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57170.2
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950397 jgi|Araly1|950397|scaffold_802284.1 523 6e-148
Ahg917419 jgi|Araly1|917419|Al_scaffold_0008_2170 387 9e-107
> Ahg950397 jgi|Araly1|950397|scaffold_802284.1
Length=388
Score = 523 bits (283), Expect = 6e-148
Identities = 316/332 (95%), Gaps = 2/332 (1%)
Strand=Plus/Plus
Query 52 AGGAGAAAC--TTCAAAAAGATGCCCACTTTGAATCTCTTCACTAACATACCAGTCGACG 109
||||||| | || ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1 AGGAGAAGCTTTTTAAAAAGATGCCCACTTTAAATCTCTTCACTAACATTCCAGTCGACG 60
Query 110 CCGTCACTTGCTCAGACATCCTCAAGGACGCCACTAAGGCCGTCGCTAAAATCATCGGCA 169
||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 61 CCGTCACTTGCTCCGATATCCTCAAGGATGCTACTAAGGCCGTCGCTAAAATCATCGGCA 120
Query 170 AACCTGAATCCTATGTGATGATACTGCTTAACAGTGGAGTGCCCATTGCATTTGCCGGTA 229
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 AACCTGAATCCTATGTGATGATACTGCTCAACAGTGGAGTGCCCATTGCATTTGCCGGTA 180
Query 230 CCGAGGAACCTGCTGCATATGGAGAATTGATATCTATTGGGGGATTAGGACCTGGCGTAA 289
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 181 CGGAGGAACCTGCTGCATATGGAGAATTGATATCTATAGGGGGATTAGGACCTGGTGTAA 240
Query 290 ACGGGAAGCTTAGCGAGACGATATCTGAGATTCTCCAAATTAAGCTCTCCATAGACAGCT 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 ACGGGAAGCTTAGCGAGACGATATCTGAGATTCTCCAAATTAAGCTCTCCATAGATAGCT 300
Query 350 CTCGCTTTTATATCAAATTCTACGATTCTCCG 381
|||||||||||||||||||||||||||| |||
Sbjct 301 CTCGCTTTTATATCAAATTCTACGATTCCCCG 332
> Ahg917419 jgi|Araly1|917419|Al_scaffold_0008_2170
Length=348
Score = 387 bits (209), Expect = 9e-107
Identities = 281/315 (89%), Gaps = 8/315 (3%)
Strand=Plus/Plus
Query 70 ATGCCCACTTTGAATCTCTTCACTAACATACCAGTCGACGCCGT-CACTTGCTCAGACAT 128
||| ||||||| ||||||||||||||| |||||| |||| || | || |||||| |||||
Sbjct 1 ATGTCCACTTTAAATCTCTTCACTAACGTACCAGCCGACTCC-TGCATTTGCTCTGACAT 59
Query 129 CCTCAAGGACGCCACTAAGGCCGTCGCTAAAATCATCGGCAAACCTGAATCCTA-TGTGA 187
||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 60 CCTCAAGGACGTTACTAAGGCCGTCGCTAAAATCATCGGCAAACCTGAATCC-AGTGTGA 118
Query 188 TGATACTGCTTAACAGTGGAGTGCCCATTGCATTTGCCGGTACCGAGGAACCTGCTGCAT 247
|||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 119 TGATACTGCTTAACAGCGGAGTGCCCATTGCATTTGCCCGTAGCGAGGAACCTGCTGCAT 178
Query 248 ATGGAGAATTGATATCTATTGGGGGATTAGGACCTGGCGTAAACGGGAAGCTTAGCGAGA 307
||||| ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 179 ATGGACAATTGGTATCTATAGGGGGATTAGGACCTGACGTAAACGGGAAGCTTAGCGAGA 238
Query 308 CGATATCTGAGATTCTCCAAATTAAGCTCTCCATAGAC-AGCTCTC-GCTTTTATATCAA 365
|||||| || ||||||||| |||||||| ||||| | |||| || ||| ||||||||
Sbjct 239 AGATATCGGAAATTCTCCAAGTTAAGCTCGACATAG-CTAGCT-TCCGCTGTTATATCAG 296
Query 366 ATTCTACGATTCTCC 380
|||||||| |||||
Sbjct 297 TTTCTACGAGTCTCC 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28592187750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5