BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57180.2
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495815 jgi|Araly1|495815|fgenesh2_kg.8__1631__AT5G57180.2 1903 0.0
> Ahg495815 jgi|Araly1|495815|fgenesh2_kg.8__1631__AT5G57180.2
Length=1805
Score = 1903 bits (1030), Expect = 0.0
Identities = 1391/1552 (90%), Gaps = 77/1552 (5%)
Strand=Plus/Plus
Query 374 aaaTGTCGGCGTGTTTAAGCAGCGGAGGAGGAGGAGCAGCAGCATATAGTTTCGAGTTAG 433
|||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 305 AAATGTCGGCTTGTATAAGCAGTGGCGGAGGAGGAGCAGCAGCATATAGTTTCGAGTTAG 364
Query 434 AAAAAGTGAAATCACCACCA-CCATCATCCTCAACAACAACAACAAGAGCTACTTCACCA 492
|||||||||||||||||||| | | | || |||||||||||||||||||||||||||||
Sbjct 365 AAAAAGTGAAATCACCACCATCAAGC-TCAACAACAACAACAACAAGAGCTACTTCACCA 423
Query 493 TCATCAACAATCTCCGAATCATCAAATTCACCACTCGCAATCTCAACGAGAAAGCCAAGA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TCATCAACAATCTCCGAATCATCAAATTCACCACTCGCAATCTCAACGAGAAAGCCAAGA 483
Query 553 ACACAACGCAAAAGACCAAACCAGACTTACAACGAAGCAGCTACTCTTCTCTCTACTGCT 612
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 484 ACTCAACGCAAAAGACCAAACCAGACTTACTACGAAGCAGCTACTCTTCTCTCAACTGCT 543
Query 613 TATCCCAACATCTTCTCCTCAAACTTGTCCTCTAAGCAAAAAACTCACTCTTCATCAAAC 672
||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 544 TATCCAAACATCTTCTCCTCAAACTTGTCCTCTAAGCAAAAAACTCACTCTTC--C-AAT 600
Query 673 TCTCACTTCTACGGGCCATTGCTTAGTGACAACGACGACGCTTCTGATTTGCTTCTTCCT 732
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 TCTCACTTCTACGGGCCATTGCTTAGTGACAACGATGACGCTTCTGATTTGCTTCTTCCT 660
Query 733 TATGAATCAATCGAAGAACCTGATTTTCTGTTTCATCCAACGATTCAAACGAAAACAGAG 792
||||||||||||||||| ||||||||||||||||| || || |||||| | |||
Sbjct 661 TATGAATCAATCGAAGAGCCTGATTTTCTGTTTCA-CC--CG------ACGAAATCGGAG 711
Query 793 TTTTTCTCAGACCAGAAGGAAGTTAACTCCGGTGGAGATTGCTACGGTGGTGAAATCGAA 852
|||||||| || || ||||||||||| |||||||||| | ||||||||||||| ||||
Sbjct 712 TTTTTCTCCGAGCACAAGGAAGTTAATTCCGGTGGAG---GTTACGGTGGTGAAACCGAA 768
Query 853 AAGTTTGATTTCTCCGACGAATTCGATGCTGAATCGATTCTCGATGAGGATATTGAAGAA 912
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 769 AAGTTTGATTTTTCCGACGAATTCGATGCTGAATCGATTCTTGATGAGGAGATTGAAGAA 828
Query 913 GGAATCGATAGTATAATGGGGACTGTGGTGGAATCGAATTCAAATTCGGGGATTTATGAA 972
|| |||||||||||||||||||||||||| ||||||||||| |||| | |||| |
Sbjct 829 GGTATCGATAGTATAATGGGGACTGTGGTCGAATCGAATTCGAATT--TGAATTTGGGGG 886
Query 973 TCTAGGGTTCCGGGAATGATCAATCGCGGTGGAAGAAGTTCTTCTAATCGGATTGGTAAA 1032
| || | || || | | || | || ||| || ||||| |||||||||
Sbjct 887 TTTATGAATCTAGG---G-T---TC-C---GG--GAA-----TC-AATCGAATTGGTAAA 927
Query 1033 CTAGAACAGATGATGATGATCAATTCATGGAATCGAAGCTCTAACGGATTCAATTTCCCG 1092
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 928 TTAGAACAGATGATGATGATCAATTCATGGAATCGAAGCTCTAATGGATTCAATTTTCCG 987
Query 1093 TTAGGGCTTGGATTACGAAGTGCTCTCAGAGAAAACGACGACACAAAATTGTGGAAG-AT 1151
||||| ||||||||| |||| ||||||||||| ||||| ||| |||| |||||| || ||
Sbjct 988 TTAGGTCTTGGATTAAGAAGCGCTCTCAGAGAGAACGATGACCCAAACTTGTGG-AGAAT 1046
Query 1152 TCATACCGTTGATTTCGAACAGATCTCGCCGCGAATTCAAACTGTCAAAACCGAAACTGC 1211
||| |||||||||||||||||||||||||||||||||| ||| |||| || ||||| ||
Sbjct 1047 TCAAACCGTTGATTTCGAACAGATCTCGCCGCGAATTCCAACCGTCACGACGGAAACCGC 1106
Query 1212 AATCTCCACCGTTGATGAGGAGAAATCCGACGGTAAGAAGGTGGTAATCTCTGGagagaa 1271
|||||||||||| || ||||| |||||||||||||| || ||||||||| ||||||||
Sbjct 1107 AATCTCCACCGTCGACGAGGAAAAATCCGACGGTAA-AA--AGGTAATCTCCGGAGAGAA 1163
Query 1272 gagtaataagaagaagaagaagaagaaAATGACGGTGACGACG--A-C---ATTGATTAC 1325
||||||||||||||||||||||||||||||||||| | || || | | ||||| |||
Sbjct 1164 GAGTAATAAGAAGAAGAAGAAGAAGAAAATGACGGCGGCGGCGACACCATTATTGACTAC 1223
Query 1326 GGAATCGAAAAGCTTGGAAGATACGGAGGAGA-CGAGTTTGAAGAGAACAGGTCCGTTGT 1384
|||||||||||||| ||||||||||||||| | ||||| ||||||||||||||| ||||
Sbjct 1224 GGAATCGAAAAGCTCGGAAGATACGGAGGA-ATCGAGTCCGAAGAGAACAGGTCCATTGT 1282
Query 1385 TGAAGCTTGATTACGACGGCGTTTTGGAAGCTTGGTCTGATAAAACGTCGCCGTTTCCCG 1444
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1283 TGAAGCTTGATTACGACGGCGTTTTGGAAGCTTGGTCTGATAAAACGTCGCCGTTTCCTG 1342
Query 1445 ACGAGATTCAGGGATCGGAAG---CT-G--TCGATGTCAATGCTAGATTAGCTCAGATTG 1498
| || |||| ||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1343 ATGACATTCTGGGATCGGAAGCTACTGGTATCGATGTCAATGCTAGATTAGCTCAGATTG 1402
Query 1499 ATTTGTTCGGAGACAGTGGAATGCGAGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 ATTTGTTCGGAGACAGTGGAATGCGAGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTC 1462
Query 1559 GAACTCGTCTTTTTTCGAAGAAAATTCGATACCAAGTTCGCAAACTCAATGCTGATCAAC 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 GAACTCGTCTTTTTTCGAAGAAAATTCGATACCAAGTTCGCAAACTCAATGCTGATCAAC 1522
Query 1619 GTCCTCGAATGAAGGGACGATTCGTGAGAAGGCCCAATGAGAGCACTCCAAGTGGACAAA 1678
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1523 GTCCTCGAATGAAGGGACGATTCGTGAGAAGACCCAATGAGAGTACTCCAAGTGGACAAA 1582
Query 1679 GATAACAAGGATAAAAGAGCCTAGATTTATCTTATCtttttttttttatcttttgtttat 1738
||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||
Sbjct 1583 GATAACAAGGATAAAAGAGCCTAGATTTATCTTTTCTTTTCTTTTT-ATGTTTTGTTTAT 1641
Query 1739 tcc-ttgttttatttttgtttctaaaattttggcaccctcctttttt-gtttcttttaag 1796
||| || ||||||||| |||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 1642 TCCCTT-TTTTATTTT-GTTTCTAAAATTTTGGCACC-TCCTTTTTTTGTTTCTT--AAG 1696
Query 1797 ttatggtccctt---t---tg--gtttataattt-agattttttGATGAGGGGGAGATTT 1847
|||||||||||| | | ||||||||||| ||||||||| ||||||| ||||||
Sbjct 1697 TTATGGTCCCTTGACTCCCTTTCGTTTATAATTTTAGATTTTTT-ATGAGGG--AGATTT 1753
Query 1848 GATTGAGAAAGTGAGGGATCAAAACTAATAAAAGTTTTTGTTATTAATAGAA 1899
|||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1754 GATTGAGAAAATGAGGGATCAAAACAAATAAAAGTTTTTGTTATTAATAGAA 1805
Score = 350 bits (189), Expect = 3e-95
Identities = 268/302 (89%), Gaps = 21/302 (7%)
Strand=Plus/Plus
Query 1 TCACAAACCAATTAGCTTCTTTCTGTAA-AACCTCACTCGTTGGCCAATTCTTTTGGTTT 59
||||||||||||| |||||| ||||||| ||| ||||| |||||||||||||||||| ||
Sbjct 1 TCACAAACCAATTGGCTTCTCTCTGTAAGAACTTCACTTGTTGGCCAATTCTTTTGG-TT 59
Query 60 TCATACACATAAATCTCAGATTCCAAATGGGTTTTCTTAGCTCTTTCTTTCAAATGATGA 119
||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 60 TCATAAACAAAAATCTCAGATTCCAAATGGGTTTTCTTAGCTCTTTCTTTC-AA--ATG- 115
Query 120 ACATTTGTTAGCAGAATCTTCCTCTTTCCCTAAAGTTTTGATC-tttttttCCCCCTTCA 178
| | ||| |||||||||||||||||||||||| | ||||||| | ||||||
Sbjct 116 --A-----T----GAA-CTTCCTCTTTCCCTAAAGTTTTGACCTTTTTTTTTCTCCTTCA 163
Query 179 ATTTTGTATTTTCTCACCAAATaaaaaaaGGTTTCTTCAGTGGGTTTTAAGGGTTTATTA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 ATTTTGTATTTTCTCACCAAATAAAAAAAGGTTTCTTCAGTGGGTTTTAAGGGTTTATTA 223
Query 239 TTATCTTAAAATTAAACACAATTCTTTAATCAAAAGGCAAA-AATCTTAATTTCATCACT 297
|||||||||||| ||||||||||| |||| ||||||| ||| ||||| ||||||||||||
Sbjct 224 TTATCTTAAAATCAAACACAATTCCTTAACCAAAAGG-AAACAATCTCAATTTCATCACT 282
Query 298 CT 299
||
Sbjct 283 CT 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5