BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57200.1
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917426 jgi|Araly1|917426|Al_scaffold_0008_2177 2789 0.0
Ahg492223 jgi|Araly1|492223|fgenesh2_kg.7__1656__AT4G25940.1 1419 0.0
Ahg887320 jgi|Araly1|887320|Al_scaffold_0161_2 1031 0.0
> Ahg917426 jgi|Araly1|917426|Al_scaffold_0008_2177
Length=1773
Score = 2789 bits (1510), Expect = 0.0
Identities = 1693/1781 (95%), Gaps = 13/1781 (1%)
Strand=Plus/Plus
Query 1 ATGGGAACGTTCACGAGCTTTCGAAAAGCCTATGGAGCGCTCAAAGATACAACCACCGTT 60
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1 ATGGGAACGTTCACGAGCTTTCGAAAAGCGTATGGAGCACTCAAAGACACAACCACCGTT 60
Query 61 GGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAAGCGACG 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 61 GGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTTAAAGCAACC 120
Query 121 AATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACATCT 180
Query 181 GTGATACAACCACGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTATCG 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTAATACAACCACGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTATCG 240
Query 241 AAAACTCGCAATTGGGTTGTTGCAATGAAAGTGTTAATAGTAATTCACAGAACATTAAGA 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AAAACTCGCAATTGGGTTGTTGCAATGAAGGTGTTAATAGTAATTCACAGAACATTAAGA 300
Query 301 GAAGGTGATCCAACATTTAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATACTC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGGTGATCCAACATTCAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATACTC 360
Query 361 AGAATATCTAACTTCAAAGATGACACAAGTCCTCTTGCGTGGGATTGTTCTGCTTGGGTT 420
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAATATCTAACTTCAAAGACGATACAAGTCCTCTTGCGTGGGATTGTTCTGCTTGGGTT 420
Query 421 AGAACATACGCGCTCTTTCTAGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGTATGAC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAACATACGCGCTCTTTCTTGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGTATGAC 480
Query 481 ATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCAAAGACGCATAGAACAAGG 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 ATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCCAAGACGCATAGAACAAGG 540
Query 541 ATGTTGTCTGGTGAAGATTTGTTAGAACAGTTACCTGCATTGCAACAGCTTCTTTACCGG 600
|||||||||||||||||| | |||||||| ||||| || || ||||||||||||||||||
Sbjct 541 ATGTTGTCTGGTGAAGATCTATTAGAACAATTACCCGCGTTACAACAGCTTCTTTACCGG 600
Query 601 CTTATCGGATGTCAGCCTGAAGGAGCAGCTTATAGCAACTATCTAATCCAATATGCTCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 CTTATCGGATGTCAGCCTGAAGGAGCAGCTTATAGCAACTATCTAATCCAATACGCTCTT 660
Query 661 GCATTGGTGCTTAAAGAAAGCTTCAAAATCTATTGTGCTATAAACGATGGAATCATTAAT 720
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 661 GCATTGGTGCTTAAAGAAAGCTTCAAAATCTATTGTGCCATCAATGATGGAATCATTAAT 720
Query 721 CTTGTAGACATGTTCTTTGAGATGTCAAGACATGATGCAGTTAAAGCTCTAAACATATAC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 721 CTTGTAGACATGTTCTTTGAGATGTCAAGACATGATGCAGTTAAAGCTCTAAACGTATAC 780
Query 781 AAACGGGCTGGTCAACAGGCTGAAAATCTAGCTGAGTTTTATGATTACTGCAAAGGACTA 840
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 781 AAACGGGCTGGTCAACAGGCTGAAAATCTGGCTGAGTTTTATGATTACTGCAAAGGGCTA 840
Query 841 GAGCTTGCTAGAAACTTTCAGTTCCCAACTTTAAGACAGCCTCCTCCTTCGTTTCTGGCG 900
||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 841 GAGCTAGCTAGGAACTTTCAGTTCCCAACCTTAAGACAGCCTCCTCCTTCGTTTCTCGCG 900
Query 901 ACAATGGAAGAGTACATTAAAGAAGCGCCTCAAAGTGGTTCTGTACAGAAAAAGCTGGAG 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 901 ACAATGGAAGAGTACATTAAAGAAGCGCCTCAGAGTGGTTCTGTACAGAAAAAACTGGAG 960
Query 961 TATCAGgaaaaagaggaagaagaacaagaacaagaagaagaacagcctgaagaaccagca 1020
|||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||
Sbjct 961 TATCAGGAAAAAGAGGAAGAAGAAGAAGAACAAGAACAA---CAGCCTGAAGAACCTGCA 1017
Query 1021 gaagaagaaaaccaaaacgaaaacaccgaaaaTGATCAGCCGCTTATCgaagaagaggaa 1080
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1018 GAAGAAGAAAACCAAAACGAAAACACCGAAAATGATCAGCCGGTTATCGAAGAAGAGGAA 1077
Query 1081 gaagagcctaaagaggagatagaagtggaagaagCTAAACCTTCACCACTGATAGACACT 1140
||||||||| ||||||||| | ||| |||||||||||||||||||||| |||||||||||
Sbjct 1078 GAAGAGCCTGAAGAGGAGAAAAAAGAGGAAGAAGCTAAACCTTCACCATTGATAGACACT 1137
Query 1141 GATGACTTACTAGG-TCTGCATGAAATAAACCCGAAAGCCGCAGAGATAGAGCAAAACAA 1199
||||||||||| || | ||||||||||||| || |||||||||||||| |||||||||||
Sbjct 1138 GATGACTTACTGGGAT-TGCATGAAATAAATCCAAAAGCCGCAGAGATTGAGCAAAACAA 1196
Query 1200 CGCATTCTCTCTCGCGATATATCCACCAGGACATGAAACTTCAGCCCCATCTAATAGTCT 1259
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1197 CGCATTCGCTCTCGCGATATATCCACCAGGACATGAAACTTCAGGCCCATCTAATAGTCT 1256
Query 1260 AAGCTTAATAGAAGCAGGGGGAAGTGGTTGGGAACTTGCACTAGTCACACCACAGaacaa 1319
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAGCTTAATAGAAGCTGGAGGAAGTGGTTGGGAACTTGCACTAGTCACACCACAGAACAA 1316
Query 1320 caacaacaa---taacaacaaTCCTCGTCCCGTTATAGCAACAAAACTCGGCGGAGGATT 1376
||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1317 CAACAACAACAATAACAACAATCCTCGTCCCGCAATAGCAACAAAACTCGGTGGAGGATT 1376
Query 1377 CGACAATCTTCTACTAGACAGTCTTTACGAAGACGATACAGCAAGAAGACAGATTCAGTT 1436
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1377 CGACAATCTTCTACTAGACAGTCTCTACGAAGACGATACAGCAAGAAGACAGATCCAATT 1436
Query 1437 AACAAACGCCGGTTACGGATTTGGAGCCACGGCTATACCCGGAGCACTAGC-TTCATCGA 1495
|||||||||||||||||||||||||||||| ||||||||||||| || ||| || ||| |
Sbjct 1437 AACAAACGCCGGTTACGGATTTGGAGCCACCGCTATACCCGGAGAACCAGCCTT-ATCAA 1495
Query 1496 ACCCAAACCCGTTCGGGGTGCAACAAGATCCTTTCGCAATGTCAAACAACATGGCTCCAC 1555
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 ACCCAAACCCATTCGGGATGCAACAAGATCCTTTCGCAATGTCAAACAACATGGCTCCAC 1555
Query 1556 CAACCAATGTTCAAATGGCAATGCAACAACAACAAATGATGATGATGAATAACCAAAGTC 1615
||||||| || ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1556 CAACCAACGTCCAAATGGCAATGCAACAACAACAAATGATGATGATGAATAATCGAAGTC 1615
Query 1616 CATATAATAACAACTATTCACCATATCATCATCATCAATTCTCACCAAATCCTTCAACTT 1675
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1616 CATATAACAACAACTATTCACCTTATCATCATCATCAGTTCTCACCAAATCCTTCAACTT 1675
Query 1676 CTTCATCTCCTAACCCTTTTGGTGACCCTTTCCTTGCTCTCCCAGCTCCTCCTTCATCTA 1735
| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1676 C---ATCTCCTAATCCTTTTGGTGACCCTTTCCTTGCCCTCCCAGCTCCTCCTTCATCTG 1732
Query 1736 CTACACAGCAGCAATACAGTCCTAATCATATGCTTCTCTAG 1776
|||| ||||| ||| |||||| |||||||||||||||||||
Sbjct 1733 CTACTCAGCAACAACACAGTCATAATCATATGCTTCTCTAG 1773
> Ahg492223 jgi|Araly1|492223|fgenesh2_kg.7__1656__AT4G25940.1
Length=2097
Score = 1419 bits (768), Expect = 0.0
Identities = 1463/1784 (82%), Gaps = 105/1784 (6%)
Strand=Plus/Plus
Query 1 ATGGGAACG-TTCACGAGCTTTCGAAAAGCCTAT-GGAGCGCTCAAAGATACAACCACCG 58
|||| |||| || || ||||| || |||| || | ||||| |||||||| | || ||||
Sbjct 150 ATGGCAACGTTTAAC-AGCTTCCGTAAAG-CTGTCGGAGCAATCAAAGATTCCACTACCG 207
Query 59 TTGGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAAGCGA 118
| || |||| |||||||||||||||||||||||||| ||| |||||||||| ||||| |
Sbjct 208 TAAGTATCGCCAAGGTCAACAGCGAATTCAAGGATTTGGATGTTGCGATCGTTAAAGCCA 267
Query 119 CGAATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACAT 178
| ||||| || |||||| | || |||||||||||| ||||||||||||||||||||||||
Sbjct 268 CAAATCACGTAGAATCTTCTCCCAAAGAACGTCATATTCGTAAAATATTCTCGGCGACAT 327
Query 179 CTGTGA-TACAACCACGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTA 237
|||| | | ||||||||||||||||| ||||| |||||||| |||||| | ||||||||
Sbjct 328 CTGT-AGTGCAACCACGAGCAGATGTTGCTTACTGCATTCACGCATTAGCCAAAAGATTG 386
Query 238 TCGAAAACTCGCAATTGGGTTGTTGCAATGAAAGTGTTAATAGTAATTCACAGAACATTA 297
|| |||||||||||||||||||| || || || ||||||||||| ||||| |||||| ||
Sbjct 387 TCAAAAACTCGCAATTGGGTTGTCGCGATCAAGGTGTTAATAGTCATTCATAGAACACTA 446
Query 298 AGAGAAGGTGATCCAACATTTAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATA 357
|||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||
Sbjct 447 AGAGAAGGTGATCCAACATTCAGAGAAGAGCTTCTCAATTACTCGCATAGAGGACATATA 506
Query 358 CT-CAGAATATCTAACTTCAAAGATGACACAAGTCCTCTTGCGTGGGATTGTTCTGCTTG 416
|| | ||||||| ||||||||||| || |||||||||||||| |||||||| ||||| ||
Sbjct 507 CTGC-GAATATCGAACTTCAAAGACGATACAAGTCCTCTTGCTTGGGATTGCTCTGCGTG 565
Query 417 GGTTAGAACATACGCGCTCTTTCTAGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGTA 476
| |||| ||||||||||| ||||| || |||||||||||||| ||||||||||| |||||
Sbjct 566 GATTAGGACATACGCGCTTTTTCTCGAGGAGCGGCTTGAATGCTATCGGGTTTTGAAGTA 625
Query 477 TGACATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTC--A-AA----GA--- 526
|||||| || ||||| ||||||||||||| |||||||||| |||| | || ||
Sbjct 626 TGACATAGAAGCAGAACGTTTACCAAAAGGTTCAGGTGCATCTTCAAAGAACGGGGATTT 685
Query 527 C---G---------C--ATAGAACAAGGATGTTGTCTGGTGAAGATTTGTTAGAACAGTT 572
| | | |||||||||||||| | |||| |||||| || ||||||||||
Sbjct 686 CAATGCTTCTCAAACGTATAGAACAAGGATGCTCTCTGATGAAGAACTGCTAGAACAGTT 745
Query 573 ACCTGCATTGCAACAGCTTCTTTACCGGCTTATCGGATGTCAGCCTGAAGGAGCAGCTTA 632
|||||||||||||||||| |||||| ||||||| || |||||||||||||||||||| ||
Sbjct 746 ACCTGCATTGCAACAGCTGCTTTACAGGCTTATTGGTTGTCAGCCTGAAGGAGCAGCCTA 805
Query 633 TAGCAACTATCTAATCCAATATGCTCTTGCATTGGTGCTTAAAGAAAGCTTCAAAATCTA 692
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 806 TAGCAACTACCTAATCCAATACGCTCTTGCATTGGTGCTTAAAGAAAGCTTCAAAATATA 865
Query 693 TTGTGCTATAAACGATGGAATCATTAATCTTGTAGACATGTTCTTTGAGATGTCAAGACA 752
||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 866 CTGTGCCATTAATGATGGAATCATTAATCTTGTAGACATGTTTTTTGAGATGTCAAGACA 925
Query 753 TGATGCAGTTAAAGCTCTAAACATATACAAACGGGCTGGTCAACAGGCTGAAAATCTAGC 812
|||||||||||||||| |||| ||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 926 TGATGCAGTTAAAGCTTTAAATATATATAAACGAGCTGGCCAACAGGCTGAAAATCTGGC 985
Query 813 TGAGTTTTATGATTACTGCAAAGGACTAGAGCTTGCTAGAAACTTTCAGTTCCCAACTTT 872
||| ||||| || ||||||||||| |||||||| || ||||||||||||||||| || ||
Sbjct 986 TGACTTTTACGAGTACTGCAAAGGTCTAGAGCTAGCGAGAAACTTTCAGTTCCCGACCTT 1045
Query 873 AAGACAGCCTCCTCCTTCGTTTCTGGCGACAATGGAAGAGTACATTAAAGAAGCGCCTCA 932
||||||||||||||||| ||||| | ||||||||||| || ||||||||||| |||||
Sbjct 1046 GAGACAGCCTCCTCCTTCTTTTCTTGTAACAATGGAAGATTATATTAAAGAAGCACCTCA 1105
Query 933 AAGTGGTTCTGTACAGAAAAAGCTGGAGTATCAGgaaaaagagga--a-gaagaacaaga 989
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 1106 AAGTGGTTCTGTACAGAAAAAGCTGGAGTATCAAGAAAAAGAGGAGGAAGAAGAACAAGA 1165
Query 990 acaagaaga--a----gaacagcctgaagaaccagca-gaagaagaaaaccaaaacgaaa 1042
| ||||||| | | ||||| |||||| | | |||| ||||| ||||| || |
Sbjct 1166 AGAAGAAGAGCACTCTGCTCAGCCAGAAGAAG-ATAAAGAAGCCGAAAATCAAAATGAGA 1224
Query 1043 acaccgaaa-aTGATCAGCCGCTTATCgaagaagaggaagaagagc-ctaaagaggagat 1100
|||||||| | || |||||||||||||||||||| ||||||||| | || || | ||
Sbjct 1225 ACACCGAAGGA-GACCAGCCGCTTATCGAAGAAGAAGAAGAAGAGGAC-AACGAAAAAAT 1282
Query 1101 agaagtggaagaagCTAAACCTTCAC-CACTGATAGACACTGATGA-CTTACTAGGTCTG 1158
||||| ||||| ||||||||||| | ||||||||||||||||| || || || |||
Sbjct 1283 AGAAGAAGAAGATGCTAAACCTTCTTTC-CTGATAGACACTGATGATCTG-CTGGGCCTG 1340
Query 1159 CATGAAATAAACCCGAAAGCCGCAGAGATAGAGCAAAACAACGCATTCTCTCTCGCGATA 1218
|||| |||||||| |||||||||||||||||| | ||| ||||| |||| || |||
Sbjct 1341 AATGAGATAAACCCTAAAGCCGCAGAGATAGAGGACCGCAATGCATTGGCTCTTGCAATA 1400
Query 1219 TATCCACCAGGACATGAAACTTCAGCCCCATCTAATAGTCTAAGCTTAATAGAAGCAGGG 1278
||||||||||| |||||| || ||| || ||| || ||| |||||||||||||| | ||
Sbjct 1401 TATCCACCAGGTCATGAAGCTCCAGGCCTATCAAACAGTTTAAGCTTAATAGAAACCGGT 1460
Query 1279 GGAAGTGGTTGGGAACTTGCACTAGTCACACCACAGaacaacaacaacaataacaacaaT 1338
||| ||||||||||| ||||| ||||| || ||||||||||||||||| ||| |
Sbjct 1461 GGATCCGGTTGGGAACTGGCACTGGTCACTCCTCAGAACAACAACAACAA---CAA---T 1514
Query 1339 CCTCGTCCCGTTATAGC-AA-CA--AAACTCGGC-GGAGGATTCGACAATCT-TCTACTA 1392
||||| ||| | | || || || ||||| | | |||||||| |||||||| | ||||
Sbjct 1515 CCTCG-CCC-TG-T-GCCAAACACTAAACTTG-CAGGAGGATTTGACAATCTAT-TACTT 1568
Query 1393 GACAGTCTTTACGAAGACGATACAGCAAGAAGACAGATTCAGTTAACAAACGCCGGTTAC 1452
|||||||| ||||| || ||| |||| || |||||||| || |||| || || || ||
Sbjct 1569 GACAGTCTGTACGAGGATGATTCAGCTAGGAGACAGATCCAACTAACCAATGCGGGCTAT 1628
Query 1453 GGATTTGGAGCCACGGCTATACCCGGAGCACTAGCTTCATCGAACCCAAACCCGTTCGGG 1512
||| ||| | || || || | | || ||| || | | || |||||| |||| |
Sbjct 1629 GGACATGGTGGCA----TAGACAC--A--AC-AGCACCACC-A-CC-AAACCCATTCGAG 1676
Query 1513 GTGCAACAAGATCCTTTCGCAATGTCAAACAACATGGCTCCACCAACCAATGTTCAAATG 1572
|||||||||||||||| |||||||| |||||||| ||||| ||||| || |||||||||
Sbjct 1677 ATGCAACAAGATCCTTTTGCAATGTCCAACAACATTGCTCCTCCAACTAACGTTCAAATG 1736
Query 1573 GCAATGCAACAACAACA--AAT----GATGATGATGAATA-ACCAAAGTCCATATAATAA 1625
||||||||||||||||| || ||||||||||| | | || ||||| || |||
Sbjct 1737 GCAATGCAACAACAACAGCAACAACAGATGATGATGA-TGCATCAGAGTCCCTACAATTT 1795
Query 1626 CAACT-ATTCACCATA-TCATCATCATCA--A-TTCTCACCAAATCCTTCAACTTCTTCA 1680
| || || || |||| |||||||||||| | |||||| || |||||| | | |
Sbjct 1796 TA-CTCAT-CATCATAATCATCATCATCATCAGTTCTCAGCAGGTCCTTC---T-C--C- 1846
Query 1681 TCTCCTAACCCTTTTGGTGACCCTTTCCTTGCTCTCCCAGCTCC 1724
| || ||| |||||||| |||||||||||||| || ||| ||||
Sbjct 1847 T-TC-TAATCCTTTTGGAGACCCTTTCCTTGCCCTTCCACCTCC 1888
> Ahg887320 jgi|Araly1|887320|Al_scaffold_0161_2
Length=1071
Score = 1031 bits (558), Expect = 0.0
Identities = 596/615 (97%), Gaps = 0/615 (0%)
Strand=Plus/Plus
Query 1 ATGGGAACGTTCACGAGCTTTCGAAAAGCCTATGGAGCGCTCAAAGATACAACCACCGTT 60
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGAACGTTTACGAGCTTTCGAAAAGCCTATGGAGCACTCAAAGATACAACCACCGTT 60
Query 61 GGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAAGCGACG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GGTCTCGCTAAGGTCAACAGCGAATTCAAGGATTTAGATATTGCGATCGTCAAAGCAACG 120
Query 121 AATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACATCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATCATGTTGAATCTCCACCAAAAGAACGTCATGTTCGTAAAATATTCTCGGCGACATCT 180
Query 181 GTGATACAACCACGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTATCG 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGATACAACCAAGAGCAGATGTAGCTTATTGCATTCATGCATTATCTAAAAGATTATCG 240
Query 241 AAAACTCGCAATTGGGTTGTTGCAATGAAAGTGTTAATAGTAATTCACAGAACATTAAGA 300
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 AAAACTCGCAATTGGGTTGTTGCAATGAAGGTGTTGATAGTAATTCACAGAACATTAAGA 300
Query 301 GAAGGTGATCCAACATTTAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATACTC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGGTGATCCAACATTCAGAGAAGAGCTTCTAAATTACTCACATAGAAGACATATACTC 360
Query 361 AGAATATCTAACTTCAAAGATGACACAAGTCCTCTTGCGTGGGATTGTTCTGCTTGGGTT 420
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAATATCTAACTTCAAAGACGATACAAGTCCTCTTGCGTGGGATTGTTCTGCTTGGGTT 420
Query 421 AGAACATACGCGCTCTTTCTAGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGTATGAC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAACATACGCGCTCTTTCTTGAAGAGCGGCTTGAATGTTATCGGGTTTTAAAGTATGAC 480
Query 481 ATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCAAAGACGCATAGAACAAGG 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 ATCGAGGCAGAGCGTTTACCAAAAGCTTCAGGTGCAGCTTCCAAGACGCATAGAACAAGG 540
Query 541 ATGTTGTCTGGTGAAGATTTGTTAGAACAGTTACCTGCATTGCAACAGCTTCTTTACCGG 600
|||||||||||||||||| | |||| ||| ||||| || || ||||||||||||||||||
Sbjct 541 ATGTTGTCTGGTGAAGATCTATTAGGACAATTACCCGCGTTACAACAGCTTCTTTACCGG 600
Query 601 CTTATCGGATGTCAG 615
||| |||||||||||
Sbjct 601 CTTCTCGGATGTCAG 615
Score = 595 bits (322), Expect = 3e-169
Identities = 381/409 (93%), Gaps = 5/409 (1%)
Strand=Plus/Plus
Query 1369 GGAGGATTCGACAATCTTCTACTAGACAGTCTTTACGAAGACGATACAGCAAGAAGACAG 1428
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 667 GGAGGATTCGACAATCTTCTACTAGACAGTCTCTACGAAGACGATACAGCAAGAAGACAG 726
Query 1429 ATTCAGTTAACAAACGCCGGTTACGGATTTGGAGCCACGGCTATACCCGGAGCACTAG-C 1487
|| || |||||||||||||||||||||||||||||||| ||||||||||||| || || |
Sbjct 727 ATCCAATTAACAAACGCCGGTTACGGATTTGGAGCCACCGCTATACCCGGAGAACCAGCC 786
Query 1488 TTCATCGAACCCAAACCCGTTCGGGGTGCAACAAGATCCTTTCGCAATGTCAAACAACAT 1547
|| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 787 TT-ATCAAACCCAAACCCATTCGGGATGCAACAAGATCCTTTCGCAATGTCAAACAACAT 845
Query 1548 GGCTCCACCAACCAATGTTCAAATGGCAATGCAACAACAACAAATGATGATGATGAATAA 1607
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GGCTCCACCAACCAACGTCCAAATGGCAATGCAACAACAACAAATGATGATGATGAATAA 905
Query 1608 CCAAAGTCCATATAATAACAACTATTCACCATATCATCATCATCAATTCTCACCAAATCC 1667
| |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 906 TCGAAGTCCATATAACAACAACTATTCACCTTATCATCATCATCAGTTCTCACCAAATCC 965
Query 1668 TTCAACTTCTTCATCTCCTAACCCTTTTGGTGACCCTTTCCTTGCTCTCCCAGCTCCTCC 1727
||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 966 TTCAACTTC---ATCTCCTAATCCTTTTGGTGACCCTTTCCTTGCCCTCCCAGCTCCTCC 1022
Query 1728 TTCATCTACTACACAGCAGCAATACAGTCCTAATCATATGCTTCTCTAG 1776
||||||| |||| ||||| ||| |||||| |||||||||||||||||||
Sbjct 1023 TTCATCTGCTACTCAGCAACAACACAGTCATAATCATATGCTTCTCTAG 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66657928750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5