BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57210.1
Length=2575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495818 jgi|Araly1|495818|fgenesh2_kg.8__1634__AT5G57210.1 3474 0.0
Ahg497294 jgi|Araly1|497294|fgenesh2_kg.161__1__AT5G57210.1 2071 0.0
> Ahg495818 jgi|Araly1|495818|fgenesh2_kg.8__1634__AT5G57210.1
Length=2569
Score = 3474 bits (1881), Expect = 0.0
Identities = 2361/2583 (91%), Gaps = 72/2583 (3%)
Strand=Plus/Plus
Query 6 AATTTTATGTTTTCTCATAAACAAAAAGTAAACCCAAA----TTGTT--TTT---TCGAA 56
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 1 AATTTTATGTTTTCTCATAAACAAAAAGTAAACCCAAATTGTTTGTTAATTTCCATCGAA 60
Query 57 ACAAGAATCGATTTGGCACGAA-A-TCGAAG-A-TTTGATGAATTGTGT--AA-AACATG 109
||||||||||||||| |||||| | | || | | || | |||||| || ||||||
Sbjct 61 ACAAGAATCGATTTGACACGAAGATTTGATGAAGCAAGA-GCGTTGTGTAGAAGAACATG 119
Query 110 GCGATTCATGAAGAAACCCAGATATCAACAACACAAGACCCTCCTTGCACTTCTAATGAT 169
|||||||||||||||| ||||||||||| ||||||||| | ||||||||||| | ||
Sbjct 120 GCGATTCATGAAGAAATCCAGATATCAAGAACACAAGA--C-CCTTGCACTTC-CA--AT 173
Query 170 GCCTCGCCGCCTCAAGATCATCGGTTCGAGAAGCTTCGTGGCGTCCGATGGCGAATCAAC 229
||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 174 GCCTCGCCGTCTCAAGATCACCGGTTCGAGAAGCTTCGCGGCGTCCGATGGCGAATCAAC 233
Query 230 CTCGGAATCTTACCGTCTTCTCCTTCCTCCACCATTGATGAGCTTCGCAGAGTAACAGCT 289
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 234 CTCGGAATCTTACCGTCTTCTCCTTCCTCCACCATTGATGAGCTTCGTAGAGTAACAGCT 293
Query 290 GATTCCAGAAGAAGGTATGCTGCTTTGAGAAGAAGACTCTTAATTGATCCACATTTGCCT 349
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 294 GATTCCAGAAGAAGATATGCTGCTTTGAGAAGACGACTCTTAATTGATCCACATTTGCCT 353
Query 350 AAGAAAGGAACAAATTCTCCAGATCTTACTATTGATAATCCTTTATCACAAAATCCTGAT 409
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 354 AAGAAAGGAACAAATTCTCCAGATCTAACTATTGATAATCCCTTATCACAAAATCCTGAT 413
Query 410 AGTACTTGGGGGAGATTCTTTCGTAATGCAGAGCTCGAGAAAACGCTTGATCAAGATCTT 469
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AGTACTTGGGGAAGATTCTTTCGTAATGCAGAGCTCGAGAAAACGCTTGATCAAGATCTT 473
Query 470 TCTCGGTTGTATCCAGAACATGGAAGTTACTTTCAATCCTCTGGATGTCAAGGGATGCTT 529
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 474 TCTCGGTTGTATCCAGAACATGGGAGTTACTTTCAATCCTCTGGATGTCAAGGGATG-TT 532
Query 530 -AGAAGGATACTTCTTTTGTGGTGTTTGAAGCATCCTGAGATTGGTTATAGACAAGGGAT 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AAGAAGGATACTTCTTTTGTGGTGTTTGAAGCATCCTGAGATTGGTTATAGACAAGGGAT 592
Query 589 GCATGAACTATTGGCTCCTTTGCTTTATGTTCTTCAAGTTGATGTGCAATATCTTACGGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCATGAACTATTGGCTCCTTTGCTTTATGTTCTTCAAGTTGATGTGCAATATCTTACGGA 652
Query 649 AGTGAGGTCAAACTATGAAGATCAGTTTGTTGATTTGTTTGACGAATTAGCGTTTCAAGA 708
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AGTTAGATCAAACTATGAAGATCAGTTTGTTGATTTGTTTGACGAATTAGCGTTTCAAGA 712
Query 709 ACGCGATTCTGGAGCTTATGATTTCGATATAAAAAAGGTTTTGGATGATTCCATGGAAGA 768
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 713 ACGTGATTCTGGAGCGTATGATTTCGATATAAAAAAGGTTTTGGATGATTCTATGGAAGA 772
Query 769 TGAAG-A-A--GA-A--G--ATGGTCCACCCTCTGGAAGCACAAAGAAGAAAAAACCAAA 819
||||| | | || | | ||||| |||||||||||||||| |||||||||||||||||
Sbjct 773 TGAAGAAGATGGAGATGGAAATGGTTCACCCTCTGGAAGCACCAAGAAGAAAAAACCAAA 832
Query 820 GAGTTTCGATGAACTCGATACCGAGACGCAGACCGCTGTGTTGTTGAGTGATGCGTATGG 879
||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 833 GAGTTTCGATGAACTTGATACCGAGACGCAGACTGTTGTGCTGTTGAGTGATGCGTATGG 892
Query 880 AGGAGAAGGCGAATTAGGAATCGTCCTCTCTGATAAATTTATGGAACACGACGCTTACAC 939
|| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 893 AGCAGAAGGCGAATTGGGAATCGTCCTCTCTGAGAAATTCATGGAACACGACGCTTACAC 952
Query 940 TATGTTTGACGCTCTTATGTACGGTGGATCCTCCCTTGGTTCGGTTTCTGTAGCCAATTT 999
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 953 AATGTTTGACGCTCTTATGTATGGTGGATCTTCCCTCGGTTCGGTTTCTGTAGCGAATTT 1012
Query 1000 CTTCATCTATTCTGCTCCCAACGATTCCATCACGGGACTGCCTCCTGTAATTGAAGCTTC 1059
||| | ||||| ||||| |||||||| |||||||||| |||||||| || ||||||||
Sbjct 1013 CTTTGTGTATTCCGCTCCAAACGATTCTGTCACGGGACTTCCTCCTGTGATCGAAGCTTC 1072
Query 1060 TGGGGCATTGTATCATCTACTTTCTTTAGTTGATGCTTCTCTTCACAGCCATCTCGTTGA 1119
|||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 1073 TGGGGCTTTGTATCATTTACTGTCTCTAGTCGATGCTTCTCTTCACAGCCATCTCGTTGA 1132
Query 1120 ACTCGGTGTTGAACCGCAGTACTTTGCGCTTCGTTGGTTACGGGTTCTGTTTGGGCGAGA 1179
||||| |||||||||||||||||||| || |||||| |||||||| |||| ||| ||||
Sbjct 1133 GCTCGGCGTTGAACCGCAGTACTTTGCTCTCCGTTGGCTACGGGTTTTGTTCGGGAGAGA 1192
Query 1180 ATTTCCACTGAGTAATCTATTGATCGTGTGGGATGAGATATTTTCCGCTGACAATTCTGA 1239
||||| |||| |||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 1193 GTTTCCGCTGAATAATCTATTGATTGTGTGGGATGAGATATTTTCTGCTGACAACTCCGA 1252
Query 1240 AGTAGAGAGAGGCGTTGAGGCTGATCTAGGGTGTGAATTCAGGATCCTTAGCTCTCCTCG 1299
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||
Sbjct 1253 GGTAGAGAGAGGTATTGAGGCTGATTTAGGGTTTGAATTCAGGATCCTTAGCTCTCCCCG 1312
Query 1300 GGGAGCTCTGGTCGCGGGAATGGCGGTTTCGATGATACTTTATCTTAGATCATCGCTGCT 1359
||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1313 AGGAGCTCTGGTTGCTGGCATGGCGGTTTCGATGATACTTTATCTGAGATCATCGCTGCT 1372
Query 1360 AGCAACTGAAAACGCGACTTCTTCTCTTAAGAAGTTGCTCAATTTTCCGGAGGACATTGA 1419
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1373 AGCAACTGAAAACGCGACTTCTTCTCTCAAGAAGTTGCTGAATTTTCCGGAGGACATTGA 1432
Query 1420 TCTGAGTAAAGTTATCGAAAAGGCTAAGACATTGCAGAGTCTTGCTTTGGAAATCAATGC 1479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TCTGAGTAAAGTTATTGAAAAGGCTAAGACATTGCAGAGTCTTGCTTTGGAAATCAATGC 1492
Query 1480 TCGTCGTGATTTGA-TTCCGAAAGGACCGAGAAAACCGATGAGAGGTCACAGCTTATCAG 1538
|| ||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1493 TCATCGTGATTT-AGTTCCAAAAGGGTCGAGAAAACCGATGAGAGGTCACAGCTTATCAG 1551
Query 1539 TTGATTCGATCTCACTTGGTTCTTCTCCTGTGGGAATAGAACCTGAGAGCTACTGGGAAG 1598
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1552 TTGATTCTATCTCACTTGGTTCTTCTCCTGTGGGAATAGTACCTGAGAGCTACTGGGAAG 1611
Query 1599 AGAAGTGGAGAGTTTTAAACAGCGCAGAAGAAGAAGAACGGAGGAAAAAAGCGTTGCAGA 1658
|||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1612 AGAAGTGGAGAGTTTTGAACAGTGCAGTAGAAGAAGAACGGAAGAAAAAAGCGTTGCAGA 1671
Query 1659 GACCAAAAGCAGGGAAGAAGAGTTGGTCGGAAAGAGTGAAGCTAAGGCTTTCAAGGACAG 1718
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1672 GACCAAAAGCAGGGAAGAAGAGTTGGTCGGAAAGAGTGAAGCTAAGGCTTACAAGAACAG 1731
Query 1719 AATCCGATCCGTCTCCCGCTGAAGCAAAGAGAAGCGGGAACAAGCCTCATATTAGACGTA 1778
||||||||||||| |||||||||||||| | |||||| ||||| || | |||||||||||
Sbjct 1732 AATCCGATCCGTCACCCGCTGAAGCAAATAAAAGCGGAAACAAACCGCCTATTAGACGTA 1791
Query 1779 GTTTGCTCGATGATTTATCCCGACAACTAGGGGAAAAAGAGATTGAGCCTCCCGAGTTCC 1838
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1792 GTTTGCTCGATGATTTATCCCGACAACTCGGGGAAAAAGAGATTGAGCCTCCCGAGTTCC 1851
Query 1839 CAAACCCAGACACCGATATCGAACGCTCATCTACAGTATCTGATACTCCCAGTGCAGAGT 1898
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1852 CAAACCCGGACACTGATATCGAACGCTCATCTACGGTATCTGATACTCCCAGTGCAGATT 1911
Query 1899 ATGAGGATAACAGTTCTGATAAAGGCAAAAGTGAGAACCACATGGATCTGCCTCTTTCTA 1958
||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||| |
Sbjct 1912 ATGAGGATAACAGTTCTGATAGAGGCAAAAGCGACAACCACACGGATCTGCCTCTTTCAA 1971
Query 1959 TCCCGGAGAACGAGCCAGAGGCGAAATCAGGGATGAATATTTTCAGAGAGAGGAAGATTC 2018
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1972 TTCCTGAGAACGAGCCAGAGGCGAAATCAGGGATGAATATCTTCAGAGAGAGGAAGATTC 2031
Query 2019 TTTCGGGTAAATTCCAGAGGCTATGGAGGCTAGGTAGAAACTTGTCTGGCGAAGAGACCT 2078
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2032 TTTCGGGTAAATTCCAGAGGCTATGGAGGTTAGGTAGAAACTTGTCCGGCGAAGAGACCT 2091
Query 2079 CTGAGACTAAAGAAGCTAAACAGGTAGATTCTGAAGACGGAAAAACCGATTCAGATTCAA 2138
||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 2092 CTGAGACGAAAGAAGCTAAACAGATAGATTTTGAAGACGGAAAAACCGATTCAGATTCAA 2151
Query 2139 CTTCAGGTCCTGGCGATTCATTAAAGAATACAGGACGGTCCATGCTTGAACATATTAAGG 2198
|| ||||| ||| ||| | ||||||||||||||| | ||||||||||||||||| ||||
Sbjct 2152 CTGCAGGTAATGGAGATGCCTTAAAGAATACAGGAAGATCCATGCTTGAACATATCAAGG 2211
Query 2199 TGATAGAGTCGGTGTTGGAGCTAAGTTCACCAGAGAATATGACTG--A---A-AACGGAA 2252
|||||||||| ||||||||||||||| |||| ||||||||| ||| | | |||||||
Sbjct 2212 TGATAGAGTCAGTGTTGGAGCTAAGTCCACCGGAGAATATGGCTGTGACTGAGAACGGAA 2271
Query 2253 -AACTAACAGTTGAAGAAGCTCTTAGAGAACTTCGTAGACTTGGAAATATGTTATTGTCG 2311
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 GAA-TAACAGTTGACGAAGCTCTTAGAGAACTTCGTAGACTTGGAAATATGTTATTGTCA 2330
Query 2312 GAAATGTAAAGTTCATTGCAGACTCGGCTTACGTAATTTCATTGTGTATTATGAAAATTC 2371
||||||||||||| |||||||||||| | ||| || || | | | | |||
Sbjct 2331 GAAATGTAAAGTTTATTGCAGACTCG--T---GTA-TT--AT-G---A--AC-A---TTC 2372
Query 2372 ATTTTTCTCT--GTGT--ATGTGTGTG-A-GAGAGACTGAGAGAGTGTAATGTATATATG 2425
|||| ||||| |||| ||||||||| | |||||| || | | |||||||||||||||
Sbjct 2373 ATTTGTCTCTATGTGTGTATGTGTGTGTAAGAGAGAGTGT-A-ATTGTAATGTATATATG 2430
Query 2426 AGAAATTTTGAAGAG--TTTTGTTTTTCTTTTAGCAGTTTCTTCTAGCACAAGGGACCTG 2483
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2431 AGAAATTTTGAAGAGGGTTTTGTTTTTCTTTTAGCAGTTTCTTCTAGTACAAGGGACTTG 2490
Query 2484 AGTTTCTTTGGACTTTGTTAGCCCTAACGGGTTTTTAACGGTTTTTAGTGACGAGAGATA 2543
||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||
Sbjct 2491 TGTTTCTTTGGACTTTGTAAACCCTAACGGGTTTTTAACGGTTCTTAGTGACAAGAGATA 2550
Query 2544 AAA 2546
|||
Sbjct 2551 AAA 2553
> Ahg497294 jgi|Araly1|497294|fgenesh2_kg.161__1__AT5G57210.1
Length=2476
Score = 2071 bits (1121), Expect = 0.0
Identities = 1384/1507 (92%), Gaps = 34/1507 (2%)
Strand=Plus/Plus
Query 6 AATTTTATGTTTTCTCATAAACAAAAAGTAAACCC-AA-A--TTGTT--TTT---TCGAA 56
||||||||||||||||||||||||||||||||||| || | ||||| ||| |||||
Sbjct 1 AATTTTATGTTTTCTCATAAACAAAAAGTAAACCCAAATAGTTTGTTAATTTCCATCGAA 60
Query 57 ACAAGAATCGATTTGGCACGAA-A-TCGA--AGATTTGATGAATTGTGT--AA-AACATG 109
|||||||||||||||||||||| | | || || || | |||||| || ||||||
Sbjct 61 ACAAGAATCGATTTGGCACGAAGATTTGATGAGGCAAGA-GCGTTGTGTAGAAGAACATG 119
Query 110 GCGATTCATGAAGAAACCCAGATATCAACAACACAAGACCCTCCTTGCACTTCTAATGAT 169
|||||||||||||||| ||||||||||| ||||||||| | ||||||||||| | ||
Sbjct 120 GCGATTCATGAAGAAATCCAGATATCAAGAACACAAGA--C-CCTTGCACTTC-CA--AT 173
Query 170 GCCTCGCCGCCTCAAGATCATCGGTTCGAGAAGCTTCGTGGCGTCCGATGGCGAATCAAC 229
||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 174 GCCTCGCCGTCTCAAGATCACCGGTTCGAGAAGCTTCGCGGCGTCCGTTGGCGAATCAAC 233
Query 230 CTCGGAATCTTACCGTCTTCTCCTTCCTCCACCATTGATGAGCTTCGCAGAGTAACAGCT 289
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CTCGGAATCTTGCCGTCCTCTCCTTCCTCCACCATTGATGAGCTTCGCAGAGTAACAGCT 293
Query 290 GATTCCAGAAGAAGGTATGCTGCTTTGAGAAGAAGACTCTTAATTGATCCACATTTGCCT 349
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 294 GATTCCAGAAGAAGATATGCTGCTTTGAGAAGACGACTCTTAATTGATCCACATTTGCCT 353
Query 350 AAGAAAGGAACAAATTCTCCAGATCTTACTATTGATAATCCTTTATCACAAAATCCTGAT 409
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 354 AAGAAAGGAACAAATTCTCCAGATCTAACTATTGATAATCCCTTATCACAAAATCCTGAT 413
Query 410 AGTACTTGGGGGAGATTCTTTCGTAATGCAGAGCTCGAGAAAACGCTTGATCAAGATCTT 469
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AGTACTTGGGGAAGATTCTTTCGTAATGCAGAGCTCGAGAAAACGCTTGATCAAGATCTT 473
Query 470 TCTCGGTTGTATCCAGAACATGGAAGTTACTTTCAATCCTCTGGATGTCAAGGGATGCTT 529
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||
Sbjct 474 TCTCGGTTGTATCCAGAACATGGGAGTTATTTTCAATCCTCTGGATGCCAAGGGATG-TT 532
Query 530 -AGAAGGATACTTCTTTTGTGGTGTTTGAAGCATCCTGAGATTGGTTATAGACAAGGGAT 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AAGAAGGATACTTCTTTTGTGGTGTTTGAAGCATCCTGAGATTGGTTATAGACAAGGGAT 592
Query 589 GCATGAACTATTGGCTCCTTTGCTTTATGTTCTTCAAGTTGATGTGCAATATCTTACGGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCATGAACTATTGGCTCCTTTGCTTTATGTTCTTCAAGTTGATGTGCAATATCTTACGGA 652
Query 649 AGTGAGGTCAAACTATGAAGATCAGTTTGTTGATTTGTTTGACGAATTAGCGTTTCAAGA 708
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 653 AGTTAGATCAAACTATGAAGATCAGTTTGTTGATTTGTTTGACGAGTTAGCGTTTCAAGA 712
Query 709 ACGCGATTCTGGAGCTTATGATTTCGATATAAAAAAGGTTTTGGATGATTCCATGGAAGA 768
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 713 ACGTGATTCTGGAGCGTATGATTTCGATATAAAAAAGGTTTTGGATGATTCTATGGAAGA 772
Query 769 TGAAGAAGA---AGATGG---T---CCACCCTCTGGAAGCACAAAGAAGAAAAAACCAAA 819
||||||||| |||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 773 TGAAGAAGATGGAGATGGAAGTGGTCCACCCTCTGGAAGCACCAAGAAGAAAAAACCAAA 832
Query 820 GAGTTTCGATGAACTCGATACCGAGACGCAGACCGCTGTGTTGTTGAGTGATGCGTATGG 879
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 833 GAGTTTCGATGAACTTGATACCGAGACGCAGACTGCTGTGTTGTTGAGTGATGCGTATGG 892
Query 880 AGGAGAAGGCGAATTAGGAATCGTCCTCTCTGATAAATTTATGGAACACGACGCTTACAC 939
|| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 893 AGCAGAAGGCGAATTGGGAATCGTCCTCTCTGAGAAATTCATGGAACACGACGCTTACAC 952
Query 940 TATGTTTGACGCTCTTATGTACGGTGGATCCTCCCTTGGTTCGGTTTCTGTAGCCAATTT 999
|||||||||||||||||||| |||||||| ||||| || || ||||||||||| |||||
Sbjct 953 AATGTTTGACGCTCTTATGTATGGTGGATCTTCCCTCGGGTCAGTTTCTGTAGCGAATTT 1012
Query 1000 CTTCATCTATTCTGCTCCCAACGATTCCATCACGGGACTGCCTCCTGTAATTGAAGCTTC 1059
|||| | ||||||||||| |||||||| |||||||||| |||||||| || ||||||||
Sbjct 1013 CTTCGTGTATTCTGCTCCAAACGATTCTGTCACGGGACTTCCTCCTGTGATCGAAGCTTC 1072
Query 1060 TGGGGCATTGTATCATCTACTTTCTTTAGTTGATGCTTCTCTTCACAGCCATCTCGTTGA 1119
|||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 1073 TGGGGCTTTGTATCATTTACTGTCTCTAGTCGATGCTTCTCTTCACAGCCATCTCGTTGA 1132
Query 1120 ACTCGGTGTTGAACCGCAGTACTTTGCGCTTCGTTGGTTACGGGTTCTGTTTGGGCGAGA 1179
|| || |||||||| ||||||||||| || |||||| |||||||| |||| ||| ||||
Sbjct 1133 GCTTGGCGTTGAACCACAGTACTTTGCTCTCCGTTGGCTACGGGTTTTGTTCGGGAGAGA 1192
Query 1180 ATTTCCACTGAGTAATCTATTGATCGTGTGGGATGAGATATTTTCCGCTGACAATTCTGA 1239
||||| |||| |||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 1193 GTTTCCGCTGAATAATCTATTGATTGTGTGGGATGAGATATTTTCTGCTGACAACTCCGA 1252
Query 1240 AGTAGAGAGAGGCGTTGAGGCTGATCTAGGGTGTGAATTCAGGATCCTTAGCTCTCCTCG 1299
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||
Sbjct 1253 GGTAGAGAGAGGTATTGAGGCTGATTTAGGGTTTGAATTCAGGATCCTTAGCTCTCCCCG 1312
Query 1300 GGGAGCTCTGGTCGCGGGAATGGCGGTTTCGATGATACTTTATCTTAGATCATCGCTGCT 1359
||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1313 AGGAGCTCTGGTTGCTGGCATGGCGGTTTCGATGATACTTTATCTGAGATCATCGCTGCT 1372
Query 1360 AGCAACTGAAAACGCGACTTCTTCTCTTAAGAAGTTGCTCAATTTTCCGGAGGACATTGA 1419
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1373 AGCAACTGAAAACGCGACTTCTTCTCTCAAGAAGTTGCTGAATTTTCCGGAGGACATTGA 1432
Query 1420 TCTGAGTAAAGTTATCGAAAAGGCTAAGACATTGCAGAGTCTTGCTTTGGAAATCAATGC 1479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TCTGAGTAAAGTTATTGAAAAGGCTAAGACATTGCAGAGTCTTGCTTTGGAAATCAATGC 1492
Query 1480 TCGTCGT 1486
|| ||||
Sbjct 1493 TCATCGT 1499
Score = 1096 bits (593), Expect = 0.0
Identities = 814/913 (89%), Gaps = 45/913 (5%)
Strand=Plus/Plus
Query 1650 CGTTGCAGAGACCAAAAGCAGGGAAGAAG-AGTTGGTCGGAAAGAGTGAAGCTAAGGCTT 1708
||||||||||||| |||||| |||||||| || | ||| |||||||||||||||| ||||
Sbjct 1577 CGTTGCAGAGACC-AAAGCA-GGAAGAAGAAG-T-GTC-GAAAGAGTGAAGCTAA-GCTT 1630
Query 1709 TCAAGGACAGAATCCGATCCGTCTCCCGCTGAAGCAAAGAGAAGCGGGAACAAGCCTCAT 1768
| | |||||||||||||||||| |||||||||||||| | |||||| ||||| || | |
Sbjct 1631 AC-A-GACAGAATCCGATCCGTCACCCGCTGAAGCAAATAAAAGCGGAAACAAACCGCCT 1688
Query 1769 ATTAGACGTAGTTTGCTCGATGATTTATCCCGACAACTAGGGGAAAAAGAGATTGAGCCT 1828
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1689 ATTAGACGTAGTTTGCTCGATGATTTATCCCGACAACTCGGGGAAAAAGAGATTGAGCCT 1748
Query 1829 CCCGAGTTCCCAAACCCAGACACCGATATCGAACGCTCATCTACAGTATCTGATACTCCC 1888
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1749 CCCGAGTTCCCAAACCCGGACACTGATATCGAACGCTCATCTACGGTATCTGATACTCCC 1808
Query 1889 AGTGCAGAGTATGAGGATAACAGTTCTGATAAAGGCAAAAGTGAGAACCACATGGATCTG 1948
|||||||| |||||||||||||||||||||| ||||||||| || ||||||| |||||||
Sbjct 1809 AGTGCAGATTATGAGGATAACAGTTCTGATAGAGGCAAAAGCGACAACCACACGGATCTG 1868
Query 1949 CCTCTTTCTATCCCGGAGAACGAGCCAGAGGCGAAATCAGGGATGAATATTTTCAGAGAG 2008
|||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1869 CCTCTTTCAATTCCTGAGAACGAGCCAGAGGCGAAATCAGGGATGAATATCTTCAGAGAG 1928
Query 2009 AGGAAGATTCTTTCGGGTAAATTCCAGAGGCTATGGAGGCTAGGTAGAAACTTGTCTGGC 2068
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1929 AGGAAGATTCTTTCGGGTAAATTCCAGAGGCTATGGAGGTTAGGTAGAAACTTGTCCGGC 1988
Query 2069 GAAGAGACCTCTGAGACTAAAGAAGCTAAACAGGTAGATTCTGAAGACGGAAAAACCGAT 2128
||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1989 GAAGAGACCTCTGAGACGAAAGAAGCTAAACAGATAGATTTTGAAGACGGAAAAACCGAT 2048
Query 2129 TCAGATTCAACTTCAGGTCCTGGCGATTCATTAAAGAATACAGGACGGTCCATGCTTGAA 2188
|||||||||||| ||||| ||| ||| | ||||||||||||||| | ||||||||||||
Sbjct 2049 TCAGATTCAACTGCAGGTAATGGAGATGCCTTAAAGAATACAGGAAGATCCATGCTTGAA 2108
Query 2189 CATATTAAGGTGATAGAGTCGGTGTTGGAGCTAAGTTCACCAGAGAATATGACTG--A-- 2244
||||| |||||||||||||| ||||||||||||||| |||| ||||||||| ||| |
Sbjct 2109 CATATCAAGGTGATAGAGTCAGTGTTGGAGCTAAGTCCACCGGAGAATATGGCTGTGACT 2168
Query 2245 -A-AACGGAA-AACTAACAGTTGAAGAAGCTCTTAGAGAACTTCGTAGACTTGGAAATAT 2301
| ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2169 GAGAACGGAAGAA-TAACAGTTGACGAAGCTCTTAGAGAACTTCGTAGACTTGGAAATAT 2227
Query 2302 GTTATTGTCGGAAATGTAAAGTTCATTGCAGACTCGGCTTACGTAATTTCATTGTGTATT 2361
||||||||| ||||||||||||| |||||||||||| | ||| || || | |
Sbjct 2228 GTTATTGTCAGAAATGTAAAGTTTATTGCAGACTCG--T---GTA-TT--AT-G---A-- 2273
Query 2362 ATGAAAATTCATTTTTCTCT--GTGT--ATGTGTGTG-A-GAGAGACTGAGAGAGTGTAA 2415
| | ||||||| ||||| |||| ||||||||| | |||||| || | | |||||
Sbjct 2274 AC-A---TTCATTTGTCTCTATGTGTGTATGTGTGTGTAAGAGAGAGTGT-A-ATTGTAA 2327
Query 2416 TGTATATATGAGAAATTTTGAAGAG--TTTTGTTTTTCTTTTAGCAGTTTCTTCTAGCAC 2473
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2328 TGTATATATGAGAAATTTTGAAGAGGGTTTTGTTTTTCTTTTAGCAGTTTCTTCTAGTAC 2387
Query 2474 AAGGGACCTGAGTTTCTTTGGACTTTGTTAGCCCTAACGGGTTTTTAACGGTTTTTAGTG 2533
||||||| || ||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 2388 AAGGGACTTGTGTTTCTTTGGACTTTGTAAACCCTAACGGGTTTTTAACGGTTCTTAGTG 2447
Query 2534 ACGAGAGATAAAA 2546
|| ||||||||||
Sbjct 2448 ACAAGAGATAAAA 2460
Score = 135 bits (73), Expect = 1e-30
Identities = 77/79 (97%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1524 GTCACAGCTTATCAGTTGATTCGATCTCACTTGGTTCTTCTCCTGTGGGAATAGAACCTG 1583
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1498 GTCACAGCTTATCAGTTGATTCTATCTCACTTGGTTCTTCTCCTGTGGGAATAGTACCTG 1557
Query 1584 AGAGCTACTGGGAAGAGAA 1602
|||||||||||||||||||
Sbjct 1558 AGAGCTACTGGGAAGAGAA 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97092034505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5