BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57220.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332020 jgi|Araly1|332020|fgenesh1_pm.C_scaffold_8001363 2261 0.0
> Ahg332020 jgi|Araly1|332020|fgenesh1_pm.C_scaffold_8001363
Length=1494
Score = 2261 bits (1224), Expect = 0.0
Identities = 1407/1494 (94%), Gaps = 18/1494 (1%)
Strand=Plus/Plus
Query 72 ATGGATTACGTTTTGATTGTTTTGCCACTTGCATTGTTTCTCATAG----------C--- 118
|||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGATTACGTTTTGATTGTTTTGCCACTTGCATTGTTTCTCATAGCATACAAATTCTTA 60
Query 119 T--TACAAATTCTTATTCTCATCCAAAACGCAGGGCTTCAATCTCCCACCAGGACCAACT 176
| ||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||
Sbjct 61 TACTACAAATTCTTATACTCATCCAAAACGCAGCGTTTCAATCTCCCACCTGGACCAACT 120
Query 177 CCGTTTCCTATCGTCGGCCATCTCCACCTAGTGAAACCACCGGTCCACCGTCTCTTCCGC 236
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CCGTTTCCTATCGTCGGCAACCTCCACCTCGTGAAACCACCGGTCCACCGTCTCTTCCGC 180
Query 237 CGCTTCGCTGAAAAATACGGCGACATCTTCTCCCTCCGTTACGGCTCTCGCCAAGTCGTA 296
|||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 181 CGCTTCGCAGAAAAATATGGCGACATCTTCTCCCTTCGTTACGGCTCACGCCAAGTCGTC 240
Query 297 GTGATCTCTTCATTGCCTCTCGTAAGAGAATCCTTCACCGGTCAAAACGACGTCATTTTA 356
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GTGATCTCTTCATTGCCTCTTGTAAGAGAATCCTTCACCGGTCAAAACGACGTCATCTTA 300
Query 357 ACAAACAGACCGCATTTTCTGACCGCGAAATACGTCGCTTACGATTACACCACTATAGGA 416
||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 301 ACAAACAGACCACATTTTCTGACCGCTAAATACGTCGCTTACGATTACACCACGATCGGA 360
Query 417 ACCGCCGCTTACGGTGACCATTGGCGTAATCTCCGCCGTATTTGCTCTCTAGAAATCCTC 476
||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 361 ACCGCAGCTTACGGTGACCATTGGCGTAATCTCCGACGTATTTGCTCTCTTGAGATCCTC 420
Query 477 TCCTCTAACCGTCTCACCGGATTCCTCTCCGTACGTAAAGACGAGATTCGTCGGCTGCTC 536
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 421 TCCTCTAACCGTCTCACCGGATTCCTCTCCGTACGTAAAGACGAGATTCGACGGTTGCTC 480
Query 537 ACAAAACTCTCACGTGAATATG---ACGGCCGTGTTGTCGAGCTTGAACCTCTTCTTGCA 593
|| ||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 481 ACGAAACTCTCACGTGAATATGATCACGGCCGTGTCGTTGAGCTTGAACCTCTTCTTGCA 540
Query 594 GATTTGACGTTCAATAATATTGTCCGCATGGTCACAGGGAGACGCTACTACGGAGACCAG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATTTGACGTTCAATAATATTGTCCGCATGGTCACAGGGAGACGCTACTACGGAGACCAG 600
Query 654 GTTCATAACAAGGAAGAAGCGAATCTATTCAAGAAACTAGTGACGGACATCAATGACAAC 713
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 601 GTTCATAACAAGGAAGAAGCGAATCTATTCAAGAAACTAGTGACGGAGATCAACGACAAC 660
Query 714 AGTGGTGCGAGCCATCCAGGAGATTATCTACCGATTCTTAAAGTGTTCGGACACGGCTAC 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 AGTGGTGCGAGCCATCCAGGAGATTATCTACCGATTCTTAAAGTGTTCGGACACAGCTAC 720
Query 774 GAGAAAAAAGTGAAAGCACTAGGCGAAGCCATGGACGCTTTCTTACAACGACTGCTCGAT 833
||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 721 GAGAAGAAAGTGAAAGCACTCGGTGAAGCCATGGACGCTTTCTTACAGCGACTGCTCGAT 780
Query 834 GAATGTCGAATAAATGGAGAGAGCAACACAATGGTTAGTCACTTGTTGTCTTTACAACTA 893
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAATGTCGAAGAAATGGAGAGAGCAACACAATGGTTAGTCACTTGTTGTCTTTACAACTA 840
Query 894 GACCAACCCAAGTATTACAGTGACGTCATCATCAAAGGGCTCATGCTCAGTATGATGCTA 953
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 841 GACCAACCCAAGTATTACAGCGACGTCATCATCAAAGGCCTCATGCTCAGTATGATGCTA 900
Query 954 GCTGGAACGGATACTGCGGCCGTAACATTGGAATGGGCGATGGCAAATTTATTaaaaaaa 1013
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GCGGGAACGGATACTGCGGCCGTAACATTGGAATGGGCGATGGCAAATTTATTAAAAAAC 960
Query 1014 CCTGAAGTGTTGAAAAAGGCAAAAGCTGAGATAGACGAGAAGATTGGAGAAGAGAGATTG 1073
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 961 CCTGAAGTGTTGAAAAAGGCGAAAGCTGAGATAGACGAGAAGATTGGAGAAGAGCGATTG 1020
Query 1074 GTCGATGAACCTGACATTGCGAATCTACCTTATCTCCAAAACATAGTTTCCGAGACTTTT 1133
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1021 GTCGATGAACCAGACATTGCGAATCTTCCTTATCTCCAAAACATTGTTTCCGAGACTTTT 1080
Query 1134 CGGTTGTGTCCAGCTGCACCACTTCTTGTTCCACGTTCTCCATCTGAAGATCTCAAGATT 1193
|||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 1081 CGGTTGTGTCCAGCCGCACCACTCCTTGTTCCACGTTCTCCTTCTGAAGATATCAAGATT 1140
Query 1194 GGTGGATACGACATACCACGTGGCACTATCGTGCTAGTGAACGCTTGGGCCATCCATAGA 1253
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1141 GGCGGATACGACATACCACGTGGCACGATCGTGCTAGTGAACGCTTGGGGCATCCATAGA 1200
Query 1254 GACCCAAGACTTTGGGATGAGCCCGAGAAGTTTATGCCTGAGCGGTTCGAAGACCAAGAA 1313
||||||| ||| |||||||||||||||| ||||||||| |||||||||||| || |||||
Sbjct 1201 GACCCAAAACTCTGGGATGAGCCCGAGAGGTTTATGCCAGAGCGGTTCGAAAACGAAGAA 1260
Query 1314 GCTTCAAAGAAACTAATGGTGTTTGGTAACGGACGAAGAACGTGTCCTGGTGCGACTTTA 1373
||| ||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1261 GCTGCAAAGAAGTTGATGGTGTTTGGTAACGGACGAAGGACGTGTCCTGGTGCGACTTTA 1320
Query 1374 GGCCAGAGGATGGTATTGTTGGCTTTAGGTTCGTTGATTCAATGCTTTGACTGGGAAAAA 1433
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1321 GGACAGAGGATGGTGTTGTTGGCTTTAGGTTCGTTGATTCAATGTTTTGACTGGGAAAAA 1380
Query 1434 GTCAACGGTGAAGATGTTGACATGACAGAGAATCCTGGAATGGCTATGCGTAAACTCGTG 1493
||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1381 GTCAACGGTGAAGATATTGACATGACCGAGAATCCTGGAATGGCTATGCGTAAGCTCGTC 1440
Query 1494 CAATTACGAGCCGTTTGCCATAAACGTCCCATTATGACTAATCTCTTGGCTTAA 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CAATTACGAGCCGTTTGCCATAAACGTCCCATTATGACTAATCTCTTGGCTTAA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5