BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57230.1

Length=692
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg357944 jgi|Araly1|357944|fgenesh1_pg.C_scaffold_8001731           787    0.0  


> Ahg357944 jgi|Araly1|357944|fgenesh1_pg.C_scaffold_8001731
Length=483

 Score =  787 bits (426),  Expect = 0.0
 Identities = 464/483 (96%), Gaps = 0/483 (0%)
 Strand=Plus/Plus

Query  78   ATGGGAGATTCAACATTTCTCGATAGAATGCTTCTCCAGCTTCGCTCCACTTGCAAGTAT  137
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGGAGATTCAACATTTCTCGATAGAATGCTTCTCCAGCTTCGCTCAACTTGCAAGTAT  60

Query  138  TACAGCGGTTACCCTAAGGATCTCGGGCCATCGCGGGTTCTCCATTTTACATCAGAAAGA  197
            || || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  61   TATAGTGGTTACCCTAAGGATCTCGGGCCATCACGGGTTCTGCATTTTACATCAGAAAGA  120

Query  198  GAGTTTGTCCAACTCCTTCACCAGGGCTATCCTGTGGTTGTCGCATTCACCATAAGGAGT  257
            |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct  121  GAGTTTGTCCAACTCCTTCACCAGGGCTATCCCGTGGTTGTTGCATTCACCATAAGAAGT  180

Query  258  AACTACACACAACATCTTGACCGGATGCTTGAGGAAGCTGCTGCTGAGTTCTATCCCAAC  317
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AACTACACGCAACATCTTGACCGGATGCTTGAGGAAGCTGCTGCTGAGTTCTATCCCAAC  240

Query  318  ATAAAATTTATGCGTGTTGAGTGTCCCAAGTATCCCGGATTCTGCATAACTCGCCAGAAA  377
            || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  241  ATTAAATTTATGCGTGTTGAGTGCCCCAAGTATCCTGGATTCTGCATAACTCGCCAGAAA  300

Query  378  AATGAATATCCTTTCATTGAAATATTCCATAGCCCACAACATGCCGGTAATGAAGGAAAA  437
            | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| 
Sbjct  301  AGTGAATATCCTTTCATTGAAATATTCCATAGCCCACAACAAGCGGGTAATGAAGGAAAG  360

Query  438  GTACAGGATCCAAATATCACTCGGTATTCAGTGAAAGTTGTACCTTACAATTATGATATG  497
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  361  GTACAGGATCCAAATATCACTCGGTATTCTGTGAAAGTTGTACCTTACAATTATGATATG  420

Query  498  AGTCCCTACGGATTCAGAGAATTCTTTAAGCGCCAGGGGGTTCGTACTTCGGATCCCAAA  557
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  421  AGTCCCTATGGATTCAGAGAATTCTTCAAGCGCCAGGGGGTTCGTACTTCGGATCCCAAA  480

Query  558  TGA  560
            |||
Sbjct  481  TGA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25427985639


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5