BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57260.1
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332024 jgi|Araly1|332024|fgenesh1_pm.C_scaffold_8001367 2252 0.0
Ahg896490 jgi|Araly1|896490|Al_scaffold_0005_456 1027 0.0
Ahg484394 jgi|Araly1|484394|fgenesh2_kg.5__386__AT3G26300.1 1003 0.0
Ahg346989 jgi|Araly1|346989|fgenesh1_pg.C_scaffold_5000381 992 0.0
Ahg346994 jgi|Araly1|346994|fgenesh1_pg.C_scaffold_5000386 202 7e-51
> Ahg332024 jgi|Araly1|332024|fgenesh1_pm.C_scaffold_8001367
Length=1512
Score = 2252 bits (1219), Expect = 0.0
Identities = 1413/1508 (94%), Gaps = 8/1508 (1%)
Strand=Plus/Plus
Query 46 ATGACTGTGCTTTGGTTTGTATCACTTATCTTACTCATC-TCTATCCTTCTCGTTGCCGT 104
|||||| |||||| |||| || ||||| |||| |||||| | |||||||||||| |||||
Sbjct 1 ATGACTCTGCTTTTGTTTCTACCACTTCTCTTCCTCATCGT-TATCCTTCTCGTCGCCGT 59
Query 105 CAAACACTCTAAGCGGCGATGGGTCCGGCAACCACCGTCTCCTCCAGGCTTACCAATCAT 164
||||||| ||||||||| |||| |||||||||||| ||||||||||||||||| |||||
Sbjct 60 CAAACACACTAAGCGGCAATGGCACCGGCAACCACCATCTCCTCCAGGCTTACCTATCAT 119
Query 165 TGGAAACTTGCACCAGCTTGGAGAATTACCACATCAATCTCTATGTAAGCTCTCAAAGAA 224
||||||||||||||||| ||||||||||||||||| ||||| || || |||||||||||
Sbjct 120 CGGAAACTTGCACCAGCTCGGAGAATTACCACATCAGTCTCTGTGGAAACTCTCAAAGAA 179
Query 225 GTATGGTCCTGTAATGTTACTGAAACTTGGAAGAGTTCCAACAGTTATAGTTTCTACTCC 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 GTATGGTCCTGTAATGTTACTGAAACTTGGAAGAGTTCCAACAGTTATAGTTTCTTCTCC 239
Query 285 TGAAACAGCAAAACAAGTTCTTAAAGACTATGACCTCCACTGTTGTAGCCGTCCAAGCTT 344
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAAACAGCGAAACAAGTTCTTAAAGACTATGACCTCCACTGTTGTAGCCGTCCAAGCTT 299
Query 345 GGAAGGTACAAGAAAGCTTTCTTACAACTATCTAGACATTGCTTTCTCTAGATTTGATGA 404
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 GGAAGGTACAAGAAAGCTTTCTTACAACTATCTAGACATTGCTTTCTCTCGATTTGATGA 359
Query 405 TTATTGGAAAGAATTAAGGAAGCTTTGTGTTGAAGAACTCTTTTGTAATAAACGAATTAA 464
|||||||||||||||||||| |||||||||| ||||||||||| ||| ||| ||| | ||
Sbjct 360 TTATTGGAAAGAATTAAGGAGGCTTTGTGTTAAAGAACTCTTTAGTACTAAGCGAGTAAA 419
Query 465 CTCGATTCAACCAATCAAGGAGGCGGAGATGGAGAAACTGATTGACTCAATTGCTGAATC 524
|||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 420 GTCGATTCAACCAATTAAGGAGGCGGAGATGAAGAAACTGATTGACTCAATTACTGAATC 479
Query 525 TGCTTCTCAGAAAACTCTGGTTAACTTGAGTGATACGTTTCTTTCTTTAAACGTTAACGT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGCTTCTCAGAAAACTCTGGTTAACTTGAGTGATACGTTTCTTTCTTTAAACGTTAACGT 539
Query 585 AATTTGCAAGGCAGTATTTGGTGTGAATTTCCAAGGAACTGTGCTTAACAATGATAAGTT 644
|||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 540 GGTTTGCAAGGCAGCATTTGGTGTGAATTTCCAAGGAACTGTACTCAACAATGATAAGTT 599
Query 645 CCAAGATTTAGTCCACGAGGCACTTGAGATGTTGGGGAGCTTCTCTGCTTCGGATTTCTT 704
||||| ||||||||| || || || |||||||||||||||||||||||||||||||| ||
Sbjct 600 CCAAGGTTTAGTCCATGAAGCTCTCGAGATGTTGGGGAGCTTCTCTGCTTCGGATTTTTT 659
Query 705 CCCGTATGTCGGTTGGAT-TGTCGATTGGTTCACGGGTTTACACGCTCGGAGGGAGAGAA 763
||| ||| |||||||||| | ||||||||| ||| || || || || ||||| |||||||
Sbjct 660 CCCATATATCGGTTGGATCT-TCGATTGGTACACTGGATTGCATGCGCGGAGAGAGAGAA 718
Query 764 GCGTACGAGATCTTGATGCTTTCTATGAACAAATGATTGATTTACATCTACAGAAAAACA 823
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 719 GTGTGCGAGATCTTGATGCTTTCTATGAGCAAATGATTGATTTACATCTACAGAAAAACA 778
Query 824 GAGAAGAAAGTGAAGATGATTTTGTGGACTTGCTCTTGAGGTTGGAAAAGGAAGAAGCTG 883
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAGAAGAAAGTGAAGATGACTTTGTGGACTTGCTCTTGAGGTTGGAAAAGGAAGAAGCTG 838
Query 884 TTCTTGGATATGGCAAACTCACAAGAAACCACATCAAAGCAATCTTGATGAACATTCTTT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTCTTGGATATGGCAAACTCACAAGAAACCACATCAAAGCAATCTTGATGAACATTCTAC 898
Query 944 TGGGGGGAATCAATACTTCTGCAATAACCATGACATGGGCAATGGCGGAACTCATAAGAA 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 899 TGGGGGGAATCAATACTTCTGCAATAACCATGACATGGGCAATGGCGGAACTCGCAAGAA 958
Query 1004 ACCCACGAGTGATGAAGAAAGTTCAATCCGAAATCAGAGCCCAAATAGGGAAAAACAACA 1063
|||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 959 ACCCGCGAGTGATGAAGAAAGTTCAAACCGAAATAAGAGACCAAATAGGGAAAAACAACA 1018
Query 1064 AAACAAGAATCATAAGTTTAGATGAGATAAATCATCTCAGTTACCTAAATATGGTTATCA 1123
||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||| ||||
Sbjct 1019 AAACAAGAATCGTAAGTTTAGATGAGATAAATCACCTCAATTACCTAAAAATGGTGATCA 1078
Query 1124 AAGAAACATGCCGGTTACATCCAGTAGCACCTCTTCTAGTCCCAAGAGAAGTGATATCTG 1183
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1079 AAGAAACATGCCGGTTACATCCAGTAGCACCTCTTCTAGTCCCAAGAGAAGTAACATCTG 1138
Query 1184 AATT-CAAGATCAACGGCTACACGATTCAACCGAAGACAAGGCTTCATGTCAACGTATGG 1242
|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1139 AATTTCAT-ATCAACGGCTACACGATTCAACCCAAGACAAGGCTTCATGTCAACGTATGG 1197
Query 1243 GCTATCGGACGTGATCCCGAGATATGGAAAGATCCAGAAGAGTTTCTCCCAGAGAGGTTT 1302
|||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1198 GCTACCGGCCGCGATCCCGAGATATGGAAAGATCCAGAAGAGTTTTTCCCAGAGAGGTTT 1257
Query 1303 ATGGACTGTGACATTGATGTTAAAGGACAAGACTATGAGTTGTTACCATTTGGAAGTGGT 1362
||||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 1258 ATGGATTGTGACATTGATGTAAAAGGACAAGACTTTGAGTTGTTACCATTTGGGAGTGGT 1317
Query 1363 CGAAGAATTTGTCCAGCAGTGTACATGGGGATAACAACAGTTGAGTTTGGTCTTGCTAAT 1422
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CGAAGAATCTGTCCAGCAATGTACATGGGGATAACAACAGTTGAGTTTGGTCTTGCTAAT 1377
Query 1423 CTCTTGTATCACTTTGATTGGAAGTTACCAGAAGGTGTTGCCG-TTGAAGATATTTACAT 1481
||||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 1378 CTCTTGTATCAGTTTGATTGGAAGTTACCAGAAGGT-TTGGCGGTTGAAGATATTTACAT 1436
Query 1482 GGATGAAGCTTCTGGACTCACTTCTCATAAGAAACATGACCTTTTACTTGTTCCTGTGAA 1541
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 GGATGAAGCTTCTGGACTCACTTCCCATAAGAAACATGACCTTTTACTTGTTCCTGTGAA 1496
Query 1542 ATCTTTAG 1549
||||||||
Sbjct 1497 ATCTTTAG 1504
> Ahg896490 jgi|Araly1|896490|Al_scaffold_0005_456
Length=1506
Score = 1027 bits (556), Expect = 0.0
Identities = 1150/1428 (81%), Gaps = 75/1428 (5%)
Strand=Plus/Plus
Query 138 ACCGTCTCCTCCAGGCTTACCAATCATTGGAAACTTGCACCAGCTTGGAGAATTACCACA 197
|||||||||||| ||||| |||||||| |||||||| |||||| | || |||||||||||
Sbjct 93 ACCGTCTCCTCCTGGCTTTCCAATCATCGGAAACTTACACCAGATCGGTGAATTACCACA 152
Query 198 TCAATCTCTATGTAAGCTCTCAAAGAAGTATGGTCCTGTAATGTTA-CTGAAACTTGGAA 256
||| |||||||| || |||||||||||||||||||| || ||| | ||| |||||||
Sbjct 153 TCAGTCTCTATGGAAACTCTCAAAGAAGTATGGTCCGGTGATG-CATTTGATGCTTGGAA 211
Query 257 GAGTTCCAACAGTTATAGTTTC-TACTCCTGAAACAGCAAAACAAGTTCTTAAAGACT-A 314
|||| |||||||| ||||||| | || | || ||||||| ||||||||| | || | |
Sbjct 212 GAGTCCCAACAGTCGTAGTTTCTTCCT-CGGATACAGCAAGACAAGTTCTGAGAG-TTCA 269
Query 315 TGACCTCCACTGTTGTAGC-CGTCCAAGCTTGGA-AGGTA-CAAGAAAGCTTTCTTACAA 371
||| |||| ||||||| | ||||||||||| || ||| | ||||| |||| ||||||||
Sbjct 270 TGATCTCCTTTGTTGTA-CTCGTCCAAGCTT-GACAGG-ACCAAGAGAGCTCTCTTACAA 326
Query 372 CTATCTAGACATTGCTTTCTCTAGATTT-GATGATTATTGGAAAGAATTAAGGAAGCTTT 430
||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||| |
Sbjct 327 CTATCTAGACATTGCTTTCTC-ACCTTTTGATGATTATTGGAAAGAAGTAAGGAAGCTCT 385
Query 431 GTGTTGAAGAACTCTTTT-GTAATAAACGAA-TTAACTCGATTCAACCAATCAAGGAGGC 488
||||| ||||||| ||| ||| ||||| || || ||||||||||||| || ||||| |
Sbjct 386 GTGTTCAAGAACT-TTTCAGTACTAAAC-AAGTTCACTCGATTCAACCGATTAAGGACGA 443
Query 489 GGAGATGGAGAAACTGATTGACTCAATTGCTGAATCTGCTTCTCAGAAAACTCTGGTTAA 548
|||| | |||||||||| || ||||| || ||||| ||||||||||| |||| |||||
Sbjct 444 GGAGGTCAAGAAACTGATCGATTCAATCGCCGAATCAGCTTCTCAGAAGACTCCCGTTAA 503
Query 549 CTTGAGTGATACGTTTCTTTCTTTAAAC-GTTAAC-GTAATTTGCAAGG-CAGTATTTGG 605
||||| ||| || |||| || ||| | || || ||| | |||| || ||| ||||||
Sbjct 504 CTTGAACAATAAGTGTCTTGCTCTAA-CTGT-AAGTGTAGTATGCA-GGACAGCATTTGG 560
Query 606 TGTGAATTTCCAAGGAACTGTGCTTAACAATGATA-AGTTC--CAAGATTTAGTCCACGA 662
||||| ||| | |||||||| || |||||||| | | ||| ||| || ||||| |||
Sbjct 561 TGTGAGTTTTGAGGGAACTGTACTCAACAATGACAGA-TTCAACAAAAT--AGTCCGCGA 617
Query 663 GGCACTTGAGATGTTGGGGAGCTTCTCTGCTTCGGATTTC-TTCCCGTATGTCGGTTGGA 721
||| || ||||||||||| ||||| ||||| ||||||||| |||| ||||||||| ||||
Sbjct 618 GGCGCTCGAGATGTTGGGAAGCTTTTCTGCCTCGGATTTCATTCC-GTATGTCGGATGGA 676
Query 722 TTGTCGAT-TGGTTCACGGGTTT-ACACGCTCGGAGGGAGAGAAGC--GTACGAGATCTT 777
| ||||| || || |||||||| | | | ||||| ||||||||| | | |||||||
Sbjct 677 TCATCGATGTG-TTGACGGGTTTGA-ATGGACGGAGAGAGAGAAGCAAG-A-GAGATCTC 732
Query 778 GATGCTTTCTATGAACAAATGATTGATTTACATCTACAGAAAAACAGAGAAGAAAGTGAA 837
|||| |||| |||||||||| ||||| ||||| |||| ||| | | | | ||||||
Sbjct 733 AATGCATTCTTTGAACAAATGTTTGATCTACATAAACAGGGAAAGAAACAGGGGAGTGAA 792
Query 838 GATGATTTTGTGGACTTGCTCTTGAGGTTGGA-AAAGGAAGAAGCTGTTCTTGGATATGG 896
||| ||| |||||||||||||| |||||||| |||| ||||||| ||||||||| |||
Sbjct 793 GAT--TTT-GTGGACTTGCTCTTAAGGTTGGAGAAAG-AAGAAGCAGTTCTTGGAAATGA 848
Query 897 CAAACTCACAAGAAACCACATCAAAGCAATCTTGATGAACATTCTT-TTGGGGGGAATCA 955
||||||||||||||||| ||||||||||||||| || | ||||| ||| ||| ||||
Sbjct 849 TAAACTCACAAGAAACCATATCAAAGCAATCTTGCTGGATGTTCTTCTTGCGGG-AATCG 907
Query 956 ATACTTCTGCAATAACCATGACATGGGCAATGGCGGAACTCATAAGAAACCCACGAGTGA 1015
|||||||||| ||||| ||||||||||||||| | ||||| |||||| ||||||||||
Sbjct 908 ATACTTCTGCGATAACAATGACATGGGCAATGACAGAACTTGCAAGAAATCCACGAGTGA 967
Query 1016 TGAAGAAAGTTCAATCCGAAATCAGAGCCCAAATAGGGAAAAACAACAAAACAA-GAATC 1074
|||||||||||||||| ||||| ||| | ||||| ||||| ||||| | ||| || ||
Sbjct 968 TGAAGAAAGTTCAATCTGAAATAAGAACTCAAATGGGGAA---CAACAGATCAATGA-TC 1023
Query 1075 ATAAGTTTAGATGAGATAAATCATCTC-AGTTACCT-AAATATGGTTATCAAAGAAACAT 1132
| ||| || || | | |||| ||| ||| || | ||| ||||| |||||||||||||
Sbjct 1024 AGC--TTT-GAAGACACAGATCAGCTCGAGT-ACTTGAAA-ATGGTGATCAAAGAAACAT 1078
Query 1133 GCCGGTTACATCC-AGTAGCACCTCTTCTAG-TCCCAAGAGAAGTGATATCTGAATTCAA 1190
| || ||||||| | | |||||||||| | | |||||||||| || |||||||| |
Sbjct 1079 GGAGGCTACATCCTACAA-CACCTCTTCT-GCTTCCAAGAGAAGCAATGTCTGAATTTGA 1136
Query 1191 GATCAACGGCTACACGATTCAAC-CGAAGACAAGGCTTCATGTCAACGTATGGGCTATCG 1249
||||||||||||||||||| | ||||| |||||||||| || || |||||||| |
Sbjct 1137 TATCAACGGCTACACGATTCCTGTC-AAGACTCGGCTTCATGTGAATGTTTGGGCTATTG 1195
Query 1250 GACGTGATCCCGAGA-TATGGAAAGATCCAGAAGAGTTTCTCCCAGAGAGGTTTATGGAC 1308
| |||||||| || | | |||||||| || |||| ||||||||| ||||||||||||||
Sbjct 1196 GTCGTGATCCTGATACT-TGGAAAGACCCTGAAGTGTTTCTCCCGGAGAGGTTTATGGA- 1253
Query 1309 TGTGA-CATTGATGTTAAAGGACAAGA-CTATGAGTTGTTACCATTTGGAAGTGGTCGAA 1366
| | |||||||| |||||||| || || |||||||||||| ||||| | |||||||
Sbjct 1254 TAACAACATTGATGCAAAAGGACA-GAACTTTGAGTTGTTACCGTTTGGTGGCGGTCGAA 1312
Query 1367 GAATTTGTCCAGCAGTGTACATGGGGATAACAACAGTTGAGTTTGGTCTTGCTAATCTCT 1426
|||| ||||| ||| | |||||||||| ||||| || ||||||||||| ||||||||||
Sbjct 1313 GAATCTGTCCTGCAATATACATGGGGACAACAATGGTGGAGTTTGGTCTAGCTAATCTCT 1372
Query 1427 TGTATCACTTTGATTGGAAGTTACCAGAAGGTGTTGCCGTT-GAAGATATTTACATGGAT 1485
||||||| ||||||||||||||||||||||| | || | |||||||| |||||||
Sbjct 1373 TGTATCATTTTGATTGGAAGTTACCAGAAGGCAC-GACGGTCGAAGATATCGACATGGAA 1431
Query 1486 GAAGCTTCTGGACTCACTTCTCAT-AAGAAACATGACCTTTTACTTGT 1532
|||||| ||||||||||| | | |||||| | || ||| |||||||
Sbjct 1432 GAAGCTCCTGGACTCACTG-TGAACAAGAAAAACGAGCTTCTACTTGT 1478
> Ahg484394 jgi|Araly1|484394|fgenesh2_kg.5__386__AT3G26300.1
Length=1503
Score = 1003 bits (543), Expect = 0.0
Identities = 1150/1433 (80%), Gaps = 82/1433 (6%)
Strand=Plus/Plus
Query 135 ACCACCGTCTCCTCCAGGCTTACCAATCATTGGAAACTTGCACCAGCTTGGAGAATTACC 194
||||||||||||||| ||||| || ||||| |||||| |||||||||| |||||||||||
Sbjct 93 ACCACCGTCTCCTCCTGGCTTTCCGATCATCGGAAACCTGCACCAGCTCGGAGAATTACC 152
Query 195 ACATCAATCTCTATGTAAG-CTCT-CAAAGAAGTATGGTCCTGTAATG-TTACTGAAACT 251
|||||| |||||||| || |||| |||| |||||||||||||| ||| || |||| ||
Sbjct 153 ACATCAGTCTCTATG-GAGACTCTCCAAA-AAGTATGGTCCTGTGATGCTT-TTGAAGCT 209
Query 252 TGGAAGAGTTCCAACAGTTATAGTTTC-TACTCCTGAAACAGCAAAACAAG-TTCTTAAA 309
||||||||| |||||||| |||||||| | |||| |||||||||||||||| || | |||
Sbjct 210 TGGAAGAGTACCAACAGTCATAGTTTCTTCCTCC-GAAACAGCAAAACAAGCTT-TGAAA 267
Query 310 GA-CTATGACCTCCACTGTTGTAGCCGTCCAAGCTTGGAAGGTACAAGAAAGCTTTCTTA 368
| | |||||||||| ||||||||||||||| |||||| ||| ||||| |||| |||||
Sbjct 268 -ATCCATGACCTCCATTGTTGTAGCCGTCCAGGCTTGGCAGGGCCAAGAGAGCTCTCTTA 326
Query 369 CAACTATCTAGACATTGCTTTCTCTAGATT-TGATGATTATTGGAAAGAA-TTAAGGAAG 426
||||||||| ||||||||||||||| || ||||||||||||||||||| || ||||||
Sbjct 327 CAACTATCTGGACATTGCTTTCTCT-CCTTATGATGATTATTGGAAAGAAGTT-AGGAAG 384
Query 427 CTTTG-TGTTGAAGAACTCTTTTGTAATAAACGAA-TTAACTCGATTCAACCAATCAAGG 484
| | | |||| |||||||||| || ||||| || || ||||||||||||| || ||||
Sbjct 385 C-TCGCTGTTCAAGAACTCTTCAATACTAAAC-AAGTTCACTCGATTCAACCCATGAAGG 442
Query 485 AGGCGGAGATGGAGAAACTGATTGACTCAATTGCTGAATCTGCTTCTCAGAAAACTCTGG 544
| | |||| | |||||||||| || ||||| | || || |||||||| || |||| |
Sbjct 443 ACGAGGAGGTCAAGAAACTGATCGATTCAATCACGGATTCAGCTTCTCATAAGACTCCGA 502
Query 545 TTAACTTGAGTGATACGTTTCTTTCTTTAAAC-GTTAACGTAATTTGCAAGG-CAGTATT 602
| ||||| | | || |||||| | || ||| |||| || | ||| ||| ||| ||
Sbjct 503 TCAACTTTAACAAGACATTTCTTGCATT-AACTGTTAGTGTGGTATGC-AGGACAGCGTT 560
Query 603 TGGTGTGAATTTCCAAGGAACTGTGCTTAACAATGATAAG-TTC-C-AAGATTTAGTCCA 659
| |||||||||| ||||||||||||| |||| ||| || ||| | || | ||||||
Sbjct 561 TAGTGTGAATTTTGAAGGAACTGTGCTCAACAGTGA-CAGATTCACTAA-A-ATAGTCCG 617
Query 660 CGAGGCACTTGAGATGTTGGGGAGCTTCTCTGCTTCGGATTTC-TTCCCGTATGTCGGTT 718
||||| || ||||||||||| ||||| ||||| || |||||| || ||||||||||| |
Sbjct 618 TGAGGCGCTCGAGATGTTGGGAAGCTTTTCTGCCTCAGATTTCATT-CCGTATGTCGGGT 676
Query 719 GGATTGTCGATTGG-TTCACGGGTTTAC-ACGCTCGGAGGGAGAGAAGCGT-ACGAGATC 775
|||| |||| || || || ||||| | | | ||||| ||||||||| | | ||||||
Sbjct 677 GGATCATCGACAGGCTT-ACAGGTTTGCGA-GGACGGAGAGAGAGAAGCATGA-GAGATC 733
Query 776 TTGATGCTTTCTATGAACAAATGATTGATTTACATCTACAGAAAAACAGAGAAGAAAGTG 835
||||||| ||||||||||||||| ||||| | ||| ||| | ||| || ||||| ||
Sbjct 734 TTGATGCCTTCTATGAACAAATGTTTGATCTCCATAAACA-AGAAA-AG-GAAGATGGT- 789
Query 836 A-AGATGATTTTGTGGACTTGCTCTTGAGGTTGGA-AAAGGAAGAAGCTGTTCTTGGATA 893
| || || |||||||||||||| ||||||||||| ||| |||||||||||||||||| |
Sbjct 790 AGCGAAGACTTTGTGGACTTGCTGTTGAGGTTGGAGAAA-GAAGAAGCTGTTCTTGGAAA 848
Query 894 TGGCAAACTCACAAGAAACCACATCAAAGCAATCTTGATGAACATTCTTTTGGGGGGAAT 953
|| ||| ||||| |||||||| |||||||||||||||||||| |||| | | |||||
Sbjct 849 TGACAAGCTCACTAGAAACCATATCAAAGCAATCTTGATGAATGTTCTGCTAGCAGGAAT 908
Query 954 CAATACTTCTGCAATAACCATGACATGGGCAATGGCGGAACTCAT-AAGAAACCCACGAG 1012
| |||||||||||||||||||||||||||| ||||| |||||| ||||| || ||||
Sbjct 909 CGATACTTCTGCAATAACCATGACATGGGCGATGGCAGAACTCGCGAAGAATCCG-CGAG 967
Query 1013 TGATGAAGAAAGTTCAATCCGAAATCAGA-GCCCAAATAGGGAAAAACAACAAAACAAGA 1071
||||||| ||||||||||| ||||||||| ||| |||| || ||||| | || | ||
Sbjct 968 TGATGAAAAAAGTTCAATCTGAAATCAGAAGCC-AAATC---AAGAACAA-AGAA-A-GA 1020
Query 1072 ATCATAAGTTTAGATGAGATAAATCATCTC-AGTTACCT-AAATATGGTTATCAAAGAAA 1129
|||| | || |||| | | |||| ||| ||| |||| ||| ||||||||||||||||
Sbjct 1021 ATCA---GCTTCCATGACACAGATCAGCTCGAGT-ACCTCAAA-ATGGTTATCAAAGAAA 1075
Query 1130 CATGCCGGTTACATCC-AGTAGCACCTCTTCTAG-TCCCAAGAGAAGTGATATCTGAATT 1187
|||| | |||||||| | | |||||||| | | |||||||||| | || ||||||||
Sbjct 1076 CATGGAGATTACATCCTACAA-CACCTCTTTT-GCTCCCAAGAGAGGCAATGTCTGAATT 1133
Query 1188 CAAGATCAACGGCTACACGATTCAAC-CGAAGACAAGGCTTCATGTCAACGTATGGGCTA 1246
||||||||||||||||||||| | |||||| |||||||||| || || |||||||
Sbjct 1134 TGAGATCAACGGCTACACGATTCCTGTC-AAGACACGGCTTCATGTTAATGTCTGGGCTA 1192
Query 1247 TCGGACGTGATCCCGAGATA--TGGAAAGATCCAGAAGAGTTTCTCCCAGAGAGGTTTAT 1304
|||| ||||||||| | ||| |||||||| || |||| |||||| ||||| ||||||||
Sbjct 1193 TCGGGCGTGATCCC-A-ATACCTGGAAAGACCCTGAAGTGTTTCTTCCAGAAAGGTTTAT 1250
Query 1305 GGACT-GTGACATTGATGTTAAAGGACAAG-ACTATGAGTTGTTACCATTTGGAAGTGGT 1362
||| | || ||||||||| |||||||| | | | |||| ||||||| ||||| | ||
Sbjct 1251 GGA-TAGTAACATTGATGCAAAAGGACA-GCATTTTGAGCTGTTACCGTTTGGGGGCGGC 1308
Query 1363 CGAAGAATTTGTCCAGCAGTGTACATGGGGATAACAACAGTT-GAGTTTGGTCTTGCTAA 1421
|| ||||| ||||| || || || ||||||| |||| | | | ||||||||||| |||||
Sbjct 1309 CGGAGAATGTGTCCTGCCGTTTATATGGGGACAACA-CTGGTAGAGTTTGGTCTGGCTAA 1367
Query 1422 TCTCTTGTATCACTTTGATTGGAAGTTACCAGAAGGTGTTGCCG-TTGAAGATATTTACA 1480
||| |||||||| ||||| ||||||||||||||||| | | | |||||||||| |||
Sbjct 1368 TCTGTTGTATCATTTTGACTGGAAGTTACCAGAAGGCAT-GAAGGTTGAAGATATCGACA 1426
Query 1481 TGGATGAAGCTTCTGGACTCACTTCTCAT-AAGAAACATGACCTTTTACTTGT 1532
|||| |||||| | ||||||||| ||| |||||| | || ||| |||||||
Sbjct 1427 TGGAAGAAGCTCCCGGACTCACTG-TCAACAAGAAAAACGAGCTTCTACTTGT 1478
> Ahg346989 jgi|Araly1|346989|fgenesh1_pg.C_scaffold_5000381
Length=1503
Score = 992 bits (537), Expect = 0.0
Identities = 1146/1431 (80%), Gaps = 78/1431 (5%)
Strand=Plus/Plus
Query 135 ACCACCGTCTCCTCCAGGCTTACCAATCATTGGAAACTTGCACCAGCTTGGAGAATTACC 194
|||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||||||
Sbjct 93 ACCACCGTCTCCACCAGGCTTTCCGATCATCGGAAACTTGCATCAGCTTGGAGAATTACC 152
Query 195 ACATCAATCTCTATGTAAG-CTCT-CAAAGAAGTATGGTCCTGTAATG-TTACTGAAACT 251
|||||| |||||||| || |||| |||| ||||||| |||||| ||| || |||| ||
Sbjct 153 ACATCAGTCTCTATG-GAGTCTCTCCAAA-AAGTATGATCCTGTGATGCTT-TTGAAGCT 209
Query 252 TGGAAGAGTTCCAACAGTTATAGTTTCTA-CTCCTGAAACAGCAAAACAAG-TTCTTAAA 309
|||||| || |||||||| |||||||||| |||| |||||||||||||||| || | |||
Sbjct 210 TGGAAGTGTGCCAACAGTCATAGTTTCTACCTCC-GAAACAGCAAAACAAGCTT-TGAAA 267
Query 310 GA-CTATGACCTCCACTGTTGTAGCCGTCCAAGCTTGGAAGGTACAAGAAAGCTTTCTTA 368
| | |||||||||| |||||||| ||||| |||||| ||| ||||| |||| |||||
Sbjct 268 -ATCCATGACCTCCATTGTTGTAGTCGTCCGGGCTTGGCAGGGCCAAGAGAGCTCTCTTA 326
Query 369 CAACTATCTAGACATTGCTTTCTCTAGATT-TGATGATTATTGGAAAGAA-TTAAGGAAG 426
||||||||| ||||| |||||||| | || ||||||||||||||||||| || ||||||
Sbjct 327 CAACTATCTGGACATAGCTTTCTC-ACCTTATGATGATTATTGGAAAGAAGTT-AGGAAG 384
Query 427 CTTTG-TGTTGAAGAACTCTT--TTG-TAATAAACGAATTAACTCGATTCAACCAATCAA 482
| | | |||| | |||||||| || ||| | ||| || ||||||||||||| || ||
Sbjct 385 C-TCGCTGTTCAGGAACTCTTCAATGCTAA-ACACG--TTCACTCGATTCAACCCATGAA 440
Query 483 GGAGGCGGAGATGGAGAAACTGAT-TGACTCAATTGCTGAATCTGCTTCTCAGAAAACTC 541
||| | |||| | |||||||||| | | ||||| || ||||| || |||||||| |||
Sbjct 441 GGATGAGGAGGTCAAGAAACTGATCT-ATTCAATCGCAGAATCAGCCTCTCAGAAGTCTC 499
Query 542 TGGTTAACTTGAGTGATACGTTTCTTTCTTTAAACGT-TAA-CGTAATTTGCAAGG-CAG 598
||||||||||| | || |||||| |||| ||| | ||| ||| | ||| ||| |||
Sbjct 500 CGGTTAACTTGAACAAGACATTTCTTGCTTT-AAC-TGTAAGTGTAGTATGC-AGGACAG 556
Query 599 TATTTGGTGTGAATTTCCAAGGAACTGTGCTTAACAATGATAAG-TTCCAA-GATTTAGT 656
||| |||||||||| ||||||||||||| |||| ||| || || ||| | ||||
Sbjct 557 CGTTTAGTGTGAATTTTGAAGGAACTGTGCTCAACAGTGA-CAGATT-CAATAAAATAGT 614
Query 657 CCACGAGGCACTTGAGATGTTGGGGAGCTTCTCTGCTTCGGATTTC-TTCCCGTATGTCG 715
|| ||||| || ||||||||||| ||||| |||||||| |||||| || ||||||||||
Sbjct 615 CCGTGAGGCGCTCGAGATGTTGGGAAGCTTTTCTGCTTCAGATTTCATT-CCGTATGTCG 673
Query 716 GTTGGATTGTCGATTGG-TTCACGGGTTTAC-ACGCTCGGAGGGAGAGAAGCGT-ACGAG 772
| ||||| | || || || || ||||| | | | |||||| |||| |||| | | |||
Sbjct 674 GATGGATCATTGACAGGCTT-ACAGGTTTGCGA-GGTCGGAGAGAGACAAGCATGA-GAG 730
Query 773 ATCTTGATGCTTTCTATGAACAAATGATTGATTTACATCTACA-GAAAAACAGAGAAGAA 831
|||||||||| ||||||||||||||| ||||| | ||| ||| || || | |||||
Sbjct 731 ATCTTGATGCCTTCTATGAACAAATGTTTGATCTCCATAAACAGGACAAGGA-AGAAGGT 789
Query 832 AGTGAAGATGATTTTGTGGACTTGCTCTTGAGGTTGGA-AAAGGAAGAAGCTGTTCTTGG 890
|||| | | || |||||||| ||| | ||||||||||| ||| |||||||||||||||||
Sbjct 790 AGTG-A-A-GACTTTGTGGATTTGTTGTTGAGGTTGGAGAAA-GAAGAAGCTGTTCTTGG 845
Query 891 ATATGGCAAACTCACAAGAAACCACATCAAAGCAATCTTGATGAACATTCTTTTGGGGGG 950
| ||| ||| ||||| |||||||| |||||||||||||||||||| |||| | | ||
Sbjct 846 AAATGACAAGCTCACTAGAAACCATATCAAAGCAATCTTGATGAATGTTCTGCTAGCAGG 905
Query 951 AATCAATACTTCTGCAATAACCATGACATGGGCAATGGCGGAACTCAT-AAGAAACCCAC 1009
|||| |||||||||||||||||||||||||||| ||||| |||||| ||||| || ||
Sbjct 906 AATCGATACTTCTGCAATAACCATGACATGGGCGATGGCAGAACTCGCGAAGAATCC-AC 964
Query 1010 GAGTGATGAAGAAAGTTCAATCCGAAATCAGA-GCCCAAATAGGGAAAAACAACAAAACA 1068
|||||||||| ||||||||||| ||||||||| ||| |||| || ||||| | || |
Sbjct 965 GAGTGATGAAAAAAGTTCAATCTGAAATCAGAAGCC-AAATC---AAGAACAA-AGAA-A 1018
Query 1069 AGAATCATAAGTTTAGATGAGATAAATCATCTC-AGTTACCT-AAATATGGTTATCAAAG 1126
|||||| | || |||| | | |||| || ||| |||| ||| ||||| |||||||
Sbjct 1019 -GAATCA---GCTTCCATGACACAGATCAGCTTGAGT-ACCTGAAA-ATGGTGATCAAAG 1072
Query 1127 AAACATGCCGGTTACATCCAGTAGCACCTCTTCTAGTCCCAAGAGAAGTGATATCTGAAT 1186
|||| || ||||||| || | ||||| | || |||||||||||| || |||||||
Sbjct 1073 AAACGTGGAGGTTACACCCTCCAACACCTATCCTCCTCCCAAGAGAAGCAATGTCTGAAT 1132
Query 1187 TCAAGATCAACGGCTACACGATTCAAC-CGAAGACAAGGCTTCATGTCAACGTATGGGCT 1245
|| |||||||||||||||| |||| | |||||| |||||||||| || |||||||||
Sbjct 1133 TCGAGATCAACGGCTACACAATTCCTGTC-AAGACACGGCTTCATGTAAATGTATGGGCT 1191
Query 1246 ATCGGACGTGATCCCGAGATATGGAAAGATCCAGAAGAGTTTCTCCCAGAGAGGTTTATG 1305
||||| ||||||||||| | |||||||| || |||| |||||||||||| |||||||||
Sbjct 1192 ATCGGGCGTGATCCCGATACCTGGAAAGACCCTGAAGTGTTTCTCCCAGAAAGGTTTATG 1251
Query 1306 GACT-GTGACATTGATGTTAAAGGACAAG-ACTATGAGTTGTTACCATTTGGAAGTGGTC 1363
|| | || ||||||||| |||||||| | | | |||| ||||||| ||||| | || |
Sbjct 1252 GA-TAGTAACATTGATGCAAAAGGACA-GCATTTTGAGCTGTTACCGTTTGGGGGCGGCC 1309
Query 1364 GAAGAATTTGTCCAGCAGTGTACATGGGGATAACAACAGTTGAGTTTGGTCTTGCTAATC 1423
| ||||| ||||| | | ||||||||||| ||||| || ||||||||||| |||||||
Sbjct 1310 GGAGAATGTGTCCTGGAATGTACATGGGGGCAACAATGGTGGAGTTTGGTCTAGCTAATC 1369
Query 1424 TCTTGTATCACTTTGATTGGAAGTTACCAGAAGGTGTTGCCG-TTGAAGATATTTACATG 1482
| |||||||| ||||| ||||||||||||||||| | | | |||||||||| |||||
Sbjct 1370 TGTTGTATCATTTTGACTGGAAGTTACCAGAAGGCAT-GAAGGTTGAAGATATCGACATG 1428
Query 1483 GATGAAGCTTCTGGACTCACTTCTCAT-AAGAAACATGACCTTTTACTTGT 1532
|| |||||| |||| |||||| ||| |||||| | || ||| |||||||
Sbjct 1429 GAGGAAGCTCCTGGTCTCACTG-TCAACAAGAAAAACGAGCTTCTACTTGT 1478
> Ahg346994 jgi|Araly1|346994|fgenesh1_pg.C_scaffold_5000386
Length=1218
Score = 202 bits (109), Expect = 7e-51
Identities = 237/297 (80%), Gaps = 16/297 (5%)
Strand=Plus/Plus
Query 56 TTTGGTTTGTATCACTTATCTTACTCATC-TCTATCCTTCTCGTTGCCGTCAAACACTCT 114
|||||||| | |||||| | || ||| || | ||| ||||||| ||| ||| ||||
Sbjct 11 TTTGGTTTCTTTCACTTCTTTTTCTC-TCTTGTATTCTTCTCGCCGCCTTCACACACAAG 69
Query 115 AAGCGGC-GATGGGTCCGGCAACCACCGTCTCCTCCAGGCTTACCAATCATTGGAAACTT 173
||||||| || | | |||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 70 AAGCGGCGGAAAAAT-CAGCAACCACCGTCTCCTCCTGGCTTTCCGATCATAGGAAACTT 128
Query 174 GCACCAGCTTGGAGAATTACCACATCAATCTCTATGTAAG-CTCTC-AAAGA-AGTATGG 230
||| |||||||||||||||||||||||||||||||| | | || || ||| | | |||||
Sbjct 129 GCATCAGCTTGGAGAATTACCACATCAATCTCTATGGA-GTCTTTCCAAA-ACA-TATGG 185
Query 231 TCCTGTAATG-TTACTGAAACTTGGAAGAGTTCCAACAGTTATAGTTTCTACTCCTGAAA 289
||| || ||| || ||| |||||||| || ||||| || | |||||| || |||| |
Sbjct 186 TCCGGTGATGCTTT-TGAGGCTTGGAAGTGTCCCAACGGTCGTTGTTTCTTCTTCTGAGA 244
Query 290 CAGCAAAACAAGTTCTT-AAAGA-CTATGACCTCCACTGTTGTAGCCGTCCAAGCTT 344
|||||||||||| | || ||| | | |||||||||| |||||||||||||| |||||
Sbjct 245 CAGCAAAACAAGCT-TTGAAA-ATCCATGACCTCCATTGTTGTAGCCGTCCTAGCTT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60373038325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5