BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57280.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495827 jgi|Araly1|495827|fgenesh2_kg.8__1643__AT5G57280.1 1395 0.0
> Ahg495827 jgi|Araly1|495827|fgenesh2_kg.8__1643__AT5G57280.1
Length=983
Score = 1395 bits (755), Expect = 0.0
Identities = 886/949 (93%), Gaps = 10/949 (1%)
Strand=Plus/Plus
Query 53 TTTTGCTCTAGACGCTAATTATGTCAAATCGACCTGAGTTACTCGCACCGCCGGAGATAT 112
||| |||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTTAGCTCGAGAAGCTAATAATGTCAAATCGACCTGAGTTACTCGCTCCGCCGGAGATAT 60
Query 113 TCTATGACGATACCGAAGCTCGGAAGTATACTTCTTCCTCTCGTATCGTCGAAATTCAGG 172
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTATGACGAAACCGAAGCTCGGAAGTATACTTCTTCCTCTCGTATCGTCGAAATTCAGG 120
Query 173 CGAAGTTATCAGAGAGAGCTTTGGAGCTTCTGGCTTTACCCGAGGATGGTGTTCCTAGAT 232
||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 121 CGAAGCTATCAGAGAGAGCTTTGGAGCTTCTTGCTTTGCCAGAGGATGGTGTTCCTAGAT 180
Query 233 TCTTACTCGACATTGGTTGTGGATCTGGATTGAGTGGAGAAACACTTTCTGAAGACGGGC 292
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |
Sbjct 181 TCTTACTCGACATTGGTTGTGGATCTGGCCTGAGTGGGGAAACACTTTCTGAAAACGGTC 240
Query 293 ATCATTGGATTGGTTTAGACATTTCAGCCTCAATGCTTCATGTTGCTGTGGAGCGAGAAG 352
||||||||||||||||||| |||||||||||||||||| | || |||||||| |||||||
Sbjct 241 ATCATTGGATTGGTTTAGATATTTCAGCCTCAATGCTTAACGTAGCTGTGGAACGAGAAG 300
Query 353 TTGAGGGTGATCTTTTACTTGGTGACATGGGGCAGGG-CTTAGGTCTTCGTTCTGGAGTT 411
||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||
Sbjct 301 TTGAGGGTGATCTTTTACTTGGTGACATGGGCCAGGGAC-TAGCTCTTCGTTCTGGAGTT 359
Query 412 ATTGACGGAGCCATCAGTATATCGGCTGTTCAGTGGTTATGCAATGCGGATAAGTCATCG 471
||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 360 ATTGATGGAGCCATCAGTATTTCAGCTGTTCAGTGGTTATGCAATGCGGATAAGTCATCC 419
Query 472 CATGAACCTCGTTTGAGGCTAAAGGCTTTCTTTGGTTCACTATACCGCTGCTTATCAAGA 531
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 420 CATGAACCTCGTTTAAGGCTAAAGGCTTTCTTTGGCTCACTATACCGCTGCTTGTCAAGA 479
Query 532 GGAGCAAGAGCAGTTTTTCAAGTGTACCCTGAAAATATTGCTCAGCGTGAATTGATTCTT 591
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 GGAGCAAGGGCAGTTTTTCAAGTGTACCCTGAGAATATTGCTCAGCGTGAATTGATTCTT 539
Query 592 CGCCAGGCCTTACAAGCTGGATTTGGCGGTGGACTTGTTGTTGACTATCCACACAGTACT 651
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 CGCCAGGCCTTACAAGCTGGATTTGGAGGTGGACTTGTTGTTGACTATCCACACAGTACT 599
Query 652 AAGAAAAGAAAAGAGTTCTTGGTCCTCACATGTGG-CACTGTTCAGACGAGTATTCAGAC 710
||||||||||||||||||||||||||||||||||| | |||||||||| || ||||| ||
Sbjct 600 AAGAAAAGAAAAGAGTTCTTGGTCCTCACATGTGGTC-CTGTTCAGACCAGCATTCAAAC 658
Query 711 CAGTAAAAATGAGTATGATGAGAGTTGCTCAGAAGATGACAACAGCGACGATGAAGAGAG 770
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 659 CAGTAAGAATGAGTATGATGAGAGTTGCTCAGAAGATGACAATAGCGAAGATGAAGAGAA 718
Query 771 TGAAGAGGTGGGTGTATCAGATAGGAATAGGCCAAGGAAAAGGCAGAGAACGAACACga- 829
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 719 TGGAGAGGTGGGTGTATCAGATAGGAATAGGCCAAGGAAAAAGCGGAGAACGAACAA-AC 777
Query 830 aagtgaaaggaagagaatgggttctgaggaagaaagagcaaagtagaagaaaaggaaaaa 889
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 778 AAGGGAAAGGAAGAGAATGGGTTCTGAAGAAGAAAGAGCAAAGTAGAAGAAAAGGAAACA 837
Query 890 aTGTTCCTGCTGACTCCAAGTTCACCAG-TAGAAAACGCAGGACGCGTTTCTAGTTTTGT 948
||||||||||||||||||||| |||| | ||||||||||| | |||||||||||||||||
Sbjct 838 ATGTTCCTGCTGACTCCAAGTACACC-GCTAGAAAACGCAAGTCGCGTTTCTAGTTTTGT 896
Query 949 TATG-ATACCTAAACGCTAGTT-AGAGCGTTTTAAAAGTTTTGTCATTA 995
|| | | || |||||||||||| |||||||||||||||||||| |||||
Sbjct 897 TAAGGAGACGTAAACGCTAGTTTAGAGCGTTTTAAAAGTTTTGACATTA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5