BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57290.1

Length=701
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950414 jgi|Araly1|950414|scaffold_802301.1                        651    0.0  


> Ahg950414 jgi|Araly1|950414|scaffold_802301.1
Length=404

 Score =  651 bits (352),  Expect = 0.0
 Identities = 387/404 (96%), Gaps = 2/404 (0%)
 Strand=Plus/Plus

Query  73   TTTGAAG-A-AAGAAGAAGAGATGGGAGTTTTCTCATTCGTGTGCAAAAGCAAAGGCGGA  130
            ||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct  1    TTTGAAGAAGAAGAAGAAGAGATGGGAGTTTTCACATTCGTTTGCAAAAGCAAAGGCGGA  60

Query  131  GAATGGACCGCAAAGCAACACGAAGGAGATCTTGAAGCTTCAGCTTCTTCCACCTACGAT  190
            |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct  61   GAATGGACCGCAAAGCAATACGAAGGAGATCTTGAAGCTTCAGCTTCTTCTACTTACGAT  120

Query  191  CTCCAGCGCAAGCTTGTTCAGACTGCTCTCTCCGCCGATTCATCTGGCGGCGTTCAGTCT  250
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  CTCCAGCGCAAGCTTGTTCAGACTGCTCTCTCCGCCGATTCTTCTGGCGGCGTTCAGTCT  180

Query  251  TCTTTCTCTCTTGTCTCTCCTACCTCCGCCGTCTTCgtggtggtcattggtggtggtggt  310
            |||||||| ||| |||||||||||||||||||||||  |||| |||||||||||||||||
Sbjct  181  TCTTTCTCCCTTATCTCTCCTACCTCCGCCGTCTTCCAGGTGATCATTGGTGGTGGTGGT  240

Query  311  ggtggaggatttgctgccggaggaggtgcagctgctggaggtggtggtggtggtgaggCT  370
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  241  GGTGGAGGATTTGCTGCCGGAGGAGGTGCAGCTGCTGGTGGTGGTGGTGGAGGTGAGGCT  300

Query  371  GCCGCAGCCACAaaggaggaagagaagaagaaggaagaatctgaagaggaagagggagaC  430
            || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  301  GCTGCAGCCACAAAGGAGGAAGAGAAGAAGAAGGAAGAATCTGAAGAGGAAGAAGGAGAC  360

Query  431  TTTGGATTTGATCTCTTTGGTTAAGAGACCTAAAACAACTTTGT  474
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TTTGGATTTGATCTCTTTGGTTAAGAGACCTAAAACAACTTTGT  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25771091892


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5