BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57300.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495829 jgi|Araly1|495829|fgenesh2_kg.8__1645__AT5G57300.1 1663 0.0
> Ahg495829 jgi|Araly1|495829|fgenesh2_kg.8__1645__AT5G57300.1
Length=1130
Score = 1663 bits (900), Expect = 0.0
Identities = 1071/1148 (93%), Gaps = 33/1148 (3%)
Strand=Plus/Plus
Query 1 CAAACTTTTTGGTCGGTTCCCGGCACCGACGTGT-CTGGCAAGAAC-AACACGTGTGATA 58
|||||||||||||||||||||||||||||||||| || |||||||| || || | | |||
Sbjct 1 CAAACTTTTTGGTCGGTTCCCGGCACCGACGTGTCCT-GCAAGAACAAATAC-T-T-ATA 56
Query 59 CATCACTCGATCTCAGAGC--TGA-AC-A-G-AGTTTGGAGTAGACGAC-TATAATTTCT 111
|| ||||||||||| |||| ||| | | | | |||||| | | | | || | |
Sbjct 57 CAACACTCGATCTCCGAGCTGTGAGTCGACGAAATTTGGA-T---C--CTTTTACTGT-A 109
Query 112 GTTTCTATTGAGAGCTATGGCACTACGATCAGTAAGCAGGAGGCTCGGGAGCAGAATTTT 171
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 110 ATTTCTATTAAGAGCTATGGCATTACGATCAGTAAGCAGGAGGCTCGGGAGCAGAATTTT 169
Query 172 GAATCAACGTTCCTTTGTTGCTTCGCTTCACTCTCATGCCACAAGTTTCGGGTTTCAAGA 231
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 170 GAATCATCGTTCCTTTGTTGCTTCGCTTCATTCTCATGCCACAAGTTTTGGGTTTCAAGA 229
Query 232 AGTAAAGGAAGAAGAGAAAAGCAAATTGGTTGGTAATGTATTCACCAATGTAGCTTCGAG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 AGTAAAGGAAGAAGAGAAAAGCAAATTGGTTGGTAATGTATTCACCAATGTAGCTTCGAG 289
Query 292 TTATGATATTATGAATGATGTGATGAGTGGTGGTTTGCATAGGCTATGGAAGGAAAGACT 351
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 290 TTATGATATTATGAATGATGTCATGAGTGGTGGCTTGCACAGGCTATGGAAGGAAAGACT 349
Query 352 CGTTGGGAAGCTAAGTCCATTTGCAGGGATGAAGCATCTTGATGTGGCCGGAGGAACAGG 411
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 350 CGTTGGGAAGCTAAGTCCATTTGCTGGGATGAAGCATCTTGATGTGGCCGGTGGAACAGG 409
Query 412 TGATGTTGCTTTTAGGATCTATGATGCTGTTTACAGTGTCAAACGAAGAGCATTGCAGAA 471
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TGATGTTGCGTTTAGGATCTATGATGCTGTTTACAGTGTCAAACGAAGAGCATTGCAGAA 469
Query 472 AGTTGATGAGGCTTCTCTTGAGGAAACTCAGATATACGTATGTGACATTAATCCTAACAT 531
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGTTGATGAGACTTCTCTTGAGGAAACTCAGATATACGTATGTGACATTAATCCTAACAT 529
Query 532 GTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGGTCTAAGAGATAACAAGTCACTCGT 591
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 530 GTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGGTCTAAGAGATAACAAATCACTCGT 589
Query 592 ATGGGTCGAAGGAGATGCAGAGGCCTTGAGTTTCGATGACAATTCAATGGATGGATACAC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATGGGTCGAAGGAGATGCAGAGGCCTTGAGTTTCGATGACAATTCAATGGATGGATACAC 649
Query 652 CATTGCATTTGGAATAAGGAATGTCACACACATCGAAAAGGCTCTAGCTGAGGCTTATAG 711
||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 650 TATTGCATTTGGCATAAGGAATGTCACACACATTGAAAAGGCTCTCGCAGAGGCTTATAG 709
Query 712 GGTACTCAAACGGGGAGGAAGATTTTTGTGCCTTGAGCTCAGCCATGTAGAAATTCCGGT 771
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 710 GGTACTAAAACGGGGAGGAAGATTCTTGTGCCTCGAGCTCAGCCATGTAGAAATTCCGAT 769
Query 772 TTTCAAAAATCTATACGATTTGTATTCTTTCCAGGTCATTCCAAACTTAGGGGAACTAAT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTTCAAAAATCTATACGATTTGTATTCTTTCCAGGTCATTCCAAACTTAGGGGAACTAAT 829
Query 832 CGCCGGGGACAGGGAATCTTATCAGTACTTGGTTGAGAGCGTTCGTCGGTTTCCCCCTCA 891
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CGCCGGGGACAGGGAATCCTATCAGTACTTGGTTGAGAGCGTTCGTCGGTTTCCCCCTCA 889
Query 892 GGAGCGATTTGCATCAATGATCGCAGATGCAGGATTTGAGAAGGTGGAGTACGAGAACCT 951
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 890 GGAGCGATTTGCATCGATGATAGCAGACGCAGGATTTGAGAAGGTGGAGTACGAGAACCT 949
Query 952 TGTTGGTGGAGTTGTCGCCATTCACTCTGCCATAAAGCTCTGACtttttttttCCTTCTC 1011
||||||||||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct 950 TGTTGGTGGAGTTGTCGCCATTCACTCTGCCATAAAGCTCTGACTTTGTT---C-TTAAC 1005
Query 1012 TTTTGCTTCAGCTGTTTCAAAACCCAAACTGTAAAAGTTGGTAGGTAAAATAAGGCTCTG 1071
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1006 TTTTGCTTCTGCTGTTTCAAAACCCAAACTGTAAAAGTTGGTAGGTAA--TAAGGCTCTG 1063
Query 1072 CTTAAGAGC----TTACTACTTAACTGTTGATTCCCACT--ATTTTTGAGGAAATTTTGT 1125
||||||||| ||||||| |||||||||||||| || | |||||| ||||||||||
Sbjct 1064 CTTAAGAGCGAACTTACTACAAAACTGTTGATTCCC-CTCCACTTTTGATGAAATTTTGT 1122
Query 1126 TGATTTTA 1133
||||||||
Sbjct 1123 TGATTTTA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5