BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G57310.1

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950416 jgi|Araly1|950416|scaffold_802303.1                        189    1e-47
  Ahg495829 jgi|Araly1|495829|fgenesh2_kg.8__1645__AT5G57300.1        76.8    8e-14


> Ahg950416 jgi|Araly1|950416|scaffold_802303.1
Length=227

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 178/212 (84%), Gaps = 16/212 (8%)
 Strand=Plus/Plus

Query  102  AATGAGA--GAGCGAGACTCGGATTCCACTGCCGCGAAAACCGCCGTTCAAGGCTACGAT  159
            |||||||  ||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct  21   AATGAGAGTGAGTGAGACTCGGATTCCACTGCCGCGAAAACCGCCATTCAAGGCTACGGT  80

Query  160  TATGACCGGAATTGTTTGGATCCACGACTGAGTAAGACGAATTCGTTGGAGGAAAGATGG  219
            |||| |||||||||||||||||| |||| ||| |||||||| |||| |||||| ||||| 
Sbjct  81   TATGGCCGGAATTGTTTGGATCCGCGACGGAGGAAGACGAAATCGTAGGAGGATAGATGA  140

Query  220  AGGAGAAAGAGAAACAAAATTACCTGCGAA-TGCGACGGAGGTTATT-GTGCGGTGCGTC  277
            | ||||| |  || |    | |||||| || |||| ||||||||||| ||||||||    
Sbjct  141  AAGAGAA-GT-AAGC----TCACCTGC-AACTGCGGCGGAGGTTATTTGTGCGGTG----  189

Query  278  GAGGAGACGAACTCGTTAGTCCGTTTTGTTAA  309
             ||||||||||||||||||| | |||||||||
Sbjct  190  -AGGAGACGAACTCGTTAGTGCATTTTGTTAA  220


> Ahg495829 jgi|Araly1|495829|fgenesh2_kg.8__1645__AT5G57300.1
Length=1130

 Score = 76.8 bits (41),  Expect = 8e-14
 Identities = 46/48 (96%), Gaps = 2/48 (4%)
 Strand=Plus/Minus

Query  15  TTGTTCTTGCCA-GACACGTCGGTGCCGGGAACCGACCAAAAAGTTTG  61
           ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct  47  TTGTTCTTG-CAGGACACGTCGGTGCCGGGAACCGACCAAAAAGTTTG  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10874342865


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5