BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G57320.1 Length=2889 Score E Sequences producing significant alignments: (Bits) Value Ahg495830 jgi|Araly1|495830|fgenesh2_kg.8__1646__AT5G57320.1 3066 0.0 > Ahg495830 jgi|Araly1|495830|fgenesh2_kg.8__1646__AT5G57320.1 Length=2937 Score = 3066 bits (1660), Expect = 0.0 Identities = 1830/1912 (96%), Gaps = 12/1912 (1%) Strand=Plus/Plus Query 1 ATGACGTTTTCCATGAGAGATTTAGATCAGGCTCTTCAAGGAGCTGGCCAGAAATCCGGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACGTTTTCCATGAGAGATTTAGATCAGGCTCTTCAAGGAGCTGGCCAGAAATCCGGG 60 Query 61 ATTGAAATATGGCGCATCGAGAACTTCAAACCTGTCACTGTTCCACAAGAGTCTCATGGG 120 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 ATTGAAATATGGCGCATCGAGAACTTCAAACCTGTCACTGTTCCAAAAGAGTCTCATGGT 120 Query 121 AAATTTTTCACCGGGGATTCCTATATAGTCTTAAAGACCACAGCGTCAAGAAGCGGTTCT 180 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGATTTTTCACCGGGGATTCCTATATAGTCTTAAAGACCACAGCGTCAAGAAGCGGTTCC 180 Query 181 TTGCATCATGATATTCACTACTGGCTCGGTAAAGATTCCAGCCAGGATGAAGCAGGTGCT 240 |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 181 TTGCATCACGATATTCACTACTGGCTTGGTAAAGATTCCAGCCAGGATGAAGCCGGTGCA 240 Query 241 GTAGCCGTCATGACTGTTGAATTAGATTCAGCATTAGGTGGACGTGCTGTTCAGTACCGA 300 ||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 241 GTAGCTGTTATGACAGTTGAATTAGATTCAGCATTAGGTGGGCGTGCTGTTCAGTACCGA 300 Query 301 GAAGTACAGGGTCACGAAACCGAGAAGTTTCTTTCCTACTTCAAACCTTGCATAATACCT 360 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAAGTACAGGGTCATGAAACGGAGAAGTTTCTTTCCTACTTCAAACCTTGCATAATACCT 360 Query 361 CAAGAAGGTGGAGTTGCTTCAGGGTTCAACCATGTAAAGCCCGAGGAGCATCAGACGCGT 420 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 361 CAAGAAGGTGGAGTTGCTTCCGGGTTCAACCATGTAAAACCCGAGGAGCATCAGACGCGT 420 Query 421 CTGTATATCTGCAAAGGCAAACATGTCGTCCGTGTTAAAGAGGTTCCGTTTGTTCGATCG 480 ||||||||||||||||||||||||||||||| | | |||||||||||||||||| Sbjct 421 CTGTATATCTGCAAAGGCAAACATGTCGTCC--G-T------GTTCCGTTTGTTCGATCG 471 Query 481 ACTCTCAACCACGAAGACGTTTTTATTCTTGATACAGAGTCTAAAATTTTTCAATTCAGT 540 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 472 ACTCTCAACCACGAAGACGTTTTCATTCTTGATACAGAGTCTAAAATTTTTCAATTCAAT 531 Query 541 GGTTCCAAGTCGAGTATTCAAGAAAGAGCAAAAGCTCTTGAGGTTGTTCAGTACATTAAA 600 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 GGTTCCAAATCGAGTATTCAAGAAAGAGCAAAAGCTCTTGAGGTTGTTCAGTACATTAAA 591 Query 601 GACACTTACCATGATGGAAAGTGCGATATCGCAGCTGTTGAGGATGGGAGGATGATGGCT 660 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 592 GACACTTACCATGATGGAAAATGCGATATCGCAGCTGTTGAGGATGGGAGGATGATGGCT 651 Query 661 GATGCTGAAGCTGGAGAGTTTTGGGGCTTGTTTGGTGGGTTTGCTCCGCTTCCTAAGAAA 720 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 652 GATGCTGAAGCTGGAGAGTTTTGGGGCTTGTTTGGTGGGTTTGCTCCTCTTCCTAAGAAA 711 Query 721 CCAGCAGTCAATGATGACGAAACCGCTGCATCTGATGGTATCAAACTTTTCAGTGTCGAG 780 |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| Sbjct 712 CCAGCAGTCAATGATGACGAAACCGCTGAATCTGATGGGATCAAACTCTTCAGTGTCGAT 771 Query 781 AAGGGACAGACAGATGCCGTAGAGGCTGAGTGTTTGACGAAAGAGCTTCTGGACACTAAC 840 |||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 772 AAGGGAAAGACAGATGCCGTAGAGGCTGAGTCTTTGACGAAAGAACTTCTGGACACTAAC 831 Query 841 AAATGTTATATTCTCGATTGCGGTCTTGAATTGTTCGTTTGGAAGGGACGAAGTACTTCA 900 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 832 AAATGTTATATTCTCGATTGCGGTCTTGAATTGTTCGTTTGGAAGGGAAGAAATACTTCA 891 Query 901 ATCGACCAAAGAAAGAGCGCAACTGAAGCTGCAGAAGAATTTTTCCGTTCGTCTGAACCG 960 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 892 ATCGACCAAAGAAAGAACGCAACTGAAGCTGCAGAAGAATTTTTCCGCTCGTCTGAACCG 951 Query 961 CCAAAATCAAACCTGGTCAGTGTGATGGAAGGGTATGAAACAGTGATGTTCCGATCTAAG 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 CCAAAATCAAACCTGGTCAGTGTGATGGAAGGGTATGAAACAGTGATGTTCCGATCTAAG 1011 Query 1021 TTTGATTCATGGCCGGCTTCAAGTACCATAGCTGAGCCCCAACAAGGCAGAGGCAAAGTC 1080 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1012 TTTGATTCATGGCCGGCTTCAAGTACCATAGCTGAACCCCAGCAAGGCAGAGGCAAAGTC 1071 Query 1081 GCAGCTCTTTTGCAGCGGCAAGGAGTTAACGTTCAAGGCCTGGTTAAGActtcttcttct 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 GCAGCTCTTTTGCAGCGGCAAGGAGTTAACGTTCAAGGCCTGGTTAAGACTTCTTCTTCT 1131 Query 1141 tcttctAAAGACGAACCGAAGCCATACATTGATGGTACAGGAAATCTCCAGGTCTGGCGA 1200 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1132 TCT---AAAGACGAACCGAAGCCATACATTGACGGTACAGGAAATCTCCAGGTCTGGCGA 1188 Query 1201 ATCAATTGTGAAGAAAAGATCCTTCTCGAAGCAGCAGAGCAATCAAAGTTCTATAGCGGG 1260 ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1189 ATCAATTGTGAAGAAAAGACCCTTCTCGAGGCAGCAGAGCAATCAAAGTTCTATAGCGGT 1248 Query 1261 GATTGTTATATACTCCAGTACTCATACCCAGGAGAAGACAGAGAGGAACATCTAGTGGGT 1320 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1249 GATTGTTATATATTCCAATACTCATATCCAGGAGAAGACAGAGAGGAACATCTAGTGGGT 1308 Query 1321 ACTTGGTTTGGCAAGCAAAGCGTTGAGGAAGACAGAGCATCTGCTATTTCTTTGGCAAAC 1380 ||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||| Sbjct 1309 ACTTGGTTTGGCAAGCAAAGCGTCGAGGAAGACAGAGCATCCGCTCTTTCCATGGCAAAC 1368 Query 1381 AAGATGGTTGAATCCATGAAGTTTGTGCCGGCTCAGGCTCGCATTAATGAGGGAAAAGAG 1440 |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||| Sbjct 1369 AAGATGGTTGAATCCATGAAGTTTATGCCGGCTCAGGCTCGCATTTACGAGGGAAAAGAG 1428 Query 1441 CCAATTCAGTTTTTTGTGATCATGCAAAGCTTCATCACATTTAAGGGTGGTGTAAGTGAT 1500 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1429 CCAATTCAGTTTTTTGTGATCATGCAAAGCTTCATCACATTTAAGGGTGGTCTAAGTGAG 1488 Query 1501 GCTTTCAAAAAGTACATAGCTGAGAACGACATCCCTGATACTACTTACGAAGCAGAAGGT 1560 ||||||||||||||||| || || ||||| ||||||||||||||||| |||||||||||| Sbjct 1489 GCTTTCAAAAAGTACATTGCAGAAAACGAAATCCCTGATACTACTTATGAAGCAGAAGGT 1548 Query 1561 GTTGCACTGTTTCGGGTTCAAGGTTCTGGACCCGAGAACATGCAAGCCATACAGATAGAA 1620 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1549 GTTGCGTTGTTTCGGGTTCAAGGTTCTGGACCCGAGAACATGCAAGCCATACAGATAGAA 1608 Query 1621 GCGGCTTCCGCAGGACTAAATTCTTCGCACTGTTATATATTACACGGTGATTCTACTGTT 1680 || | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1609 GCAGTTTCCACAGGACTAAATTCTTCACACTGTTATATATTACACGGTGATTCTACTGTT 1668 Query 1681 TTCACTTGGTGTGGCAATCTTACTTCCTCGGAAGATCAAGAACTTATGGAAAGAATGTTG 1740 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1669 TTCACTTGGTGTGGCAATCTGACTTCCTCGGATGATCAAGAACTTATGGAAAGAATGTTG 1728 Query 1741 GATTTGATTAAGCCAAATGAACCCACTAAGGCACAAAAGGAAGGCTCAGAGTCTGAACAG 1800 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1729 GATTTGATTAAGCCAAATGAACCCACTAAGGCACAAAAGGAAGGTTCAGAGTCTGAACAT 1788 Query 1801 TTTTGGGAATTATTAGGAGGCAAATCAGAATATCCGAGCCAAAAGATCAAAAGGGATGGA 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1789 TTTTGGGAATTATTAGGAGGCAAATCAGAATATCCGAGCCAAAAGATCAAAAAGGATGGA 1848 Query 1861 GAGAGTGATCCTCATCTCTTTTCTTGCACATATACAAACGAAAGTCTGAAGG 1912 |||||||||||||||||||| |||||||||| ||||||||||| |||||||| Sbjct 1849 GAGAGTGATCCTCATCTCTTCTCTTGCACATTTACAAACGAAAATCTGAAGG 1900 Score = 1541 bits (834), Expect = 0.0 Identities = 931/978 (95%), Gaps = 5/978 (1%) Strand=Plus/Plus Query 1914 TACAGAGATCTTCAACTTCACTCAAGATGATTTGATGACTGAAGATATCTTCATACTTGA 1973 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1959 TACAGAGATCTTCAGCTTCACTCAAGATGATTTGATGACTGAAGATATCTTCATACTTGA 2018 Query 1974 TTGTCACACTGAGGTCTTTGTCTGGGTGGGACAACAAGTTGACCCAAAGAAGAAACCTCA 2033 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2019 TTGTCACACTGAAATCTTTGTCTGGGTGGGACAACAAGTTGACCCAAAGAAGAAACCTCA 2078 Query 2034 AGCTTTGGACATTGGAGAGAACTTTCTTAAGCATGATTTCCTCCTAGAGAATCTAGCAAG 2093 || ||| | |||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 2079 AGTTTTAGCCATTGGAGAGAATTTTCTCAAGCACGATTTCCTCCTAGAGAATCTAGCAAG 2138 Query 2094 TGAAACACCGATATACATTGTAACAGAGGGAAACGAACCTCCATTTTTCACTCGGTTCTT 2153 ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2139 TGAAACACCAATATATATTGTAACAGAGGGAAATGAACCTCCATTTTTCACTCGGTTCTT 2198 Query 2154 CACCTGGGACTCTTCTAAATCTGGAATGCATGGAGACTCTTTCCAGAGAAAGCTTGCGAT 2213 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 2199 CACCTGGGACTCTTCTAAATCTGGAATGCACGGAAACTCTTTCCAGAGAAAGCTTGCGAT 2258 Query 2214 CCTGACAAATAAAGGAAAGCCGCTTCTAGATAAACCTAAAAGGAGAGTCCCTGCATACAG 2273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2259 CCTGACAAATAAAGGAAAGCCGCTTCTAGATAAACCTAAAAGGAGAGTCCCTGCATACAG 2318 Query 2274 TAGCAGGTCCACCGTTCCAGACAAATCGCAGCCTCGGTCCAGAAGTATGACTTTTAGTCC 2333 ||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 2319 CAGCAGGTCCACAGTTCCTGACAAGTCGCAGCCTCGGTCCAGAAGTATGACCTTTAGTCC 2378 Query 2334 AGACAGGGCCCGCGTGAGGGGACGGTCTCCAGCTTTCAACGCACTTGCAGCAAACTTTGA 2393 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2379 AGACAGGGCCCGCGTGAGGGGACGGTCACCAGCTTTCAACGCACTTGCAGCAAACTTTGA 2438 Query 2394 GAAACTAAATATAAGAAACCAATCAACTCCACCACCTATGGTTAGTCCAATGGTCCGGAA 2453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2439 GAAACTAAATATAAGAAACCAATCAACTCCACCACCTATGGTTAGTCCAATGGTCCGGAA 2498 Query 2454 GCTTTACCCGAAATCTCATGCCCCAGACCTCTCGAAGATAGCTCCTAAATCCGC---TAT 2510 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 2499 GCTTTACCCGAAATCTCATGCCCCAGACCTCTCAAAGATAGCTCCTAAATCCGCGGCTAT 2558 Query 2511 AGCTGCCCGTACAGCGCTTTTTGAAAAACCTACTCCTACTTCTCAAGAACCACCTACTAG 2570 |||||||||||| |||||||| |||||| || |||||||||||||||||||||||||||| Sbjct 2559 AGCTGCCCGTACGGCGCTTTTCGAAAAATCTCCTCCTACTTCTCAAGAACCACCTACTAG 2618 Query 2571 CCCCAGTTCTTCAGAAGCTACAAACCAAGCAGAAGCACCAAAATCGACATCAGAGACAAA 2630 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 2619 CCCCAGTTCTTCAGAAGCTACTAACCAAGCAGAAGCACCAAAATCGACATCAGAGACGAA 2678 Query 2631 CGAGgaagaagcaatgagcagcatcaatgaagactcaaaagaagaagaagcagaagaaga 2690 ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 2679 CGAGGAAGAAGCAATGAGCAGCATCCATGAAGATTCAAAAGAAGAAGAAGCAGAAGAAGA 2738 Query 2691 gagcagcCTCCCTACTTTCCCATATGAACGCCTTAAAACCGACTCAGAGGATCCTGTTTC 2750 |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| ||| Sbjct 2739 TAGCAGCCTCCCTACTTTCCCATATGAGCGCCTCAAAACCGACTCAGAGAATCCTGCTTC 2798 Query 2751 AGATGTCGACCTCACTAGAAGAGAGGCATACTTGACTTCAGT-AGAGTTCAAGGAGAAGT 2809 |||| |||||||||| ||||||||||||||| |||||||| | ||||||||| ||||||| Sbjct 2799 AGATATCGACCTCACAAGAAGAGAGGCATACATGACTTCA-TCAGAGTTCAAAGAGAAGT 2857 Query 2810 TTGAGATGACAAAGAATGAGTTCTACAAACTGCCTAAATGGAAACAAAACAAGCTCAAAA 2869 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 2858 TTGAGATGACAAAGAACGAGTTCTATAAACTGCCTAAATGGAAACAAAACAAGCTGAAAA 2917 Query 2870 TGTCTGTCAATCTCTTCT 2887 ||||||| |||||||||| Sbjct 2918 TGTCTGTTAATCTCTTCT 2935 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109052371435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5