BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57320.1
Length=2889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495830 jgi|Araly1|495830|fgenesh2_kg.8__1646__AT5G57320.1 3066 0.0
> Ahg495830 jgi|Araly1|495830|fgenesh2_kg.8__1646__AT5G57320.1
Length=2937
Score = 3066 bits (1660), Expect = 0.0
Identities = 1830/1912 (96%), Gaps = 12/1912 (1%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCCATGAGAGATTTAGATCAGGCTCTTCAAGGAGCTGGCCAGAAATCCGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGTTTTCCATGAGAGATTTAGATCAGGCTCTTCAAGGAGCTGGCCAGAAATCCGGG 60
Query 61 ATTGAAATATGGCGCATCGAGAACTTCAAACCTGTCACTGTTCCACAAGAGTCTCATGGG 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATTGAAATATGGCGCATCGAGAACTTCAAACCTGTCACTGTTCCAAAAGAGTCTCATGGT 120
Query 121 AAATTTTTCACCGGGGATTCCTATATAGTCTTAAAGACCACAGCGTCAAGAAGCGGTTCT 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGATTTTTCACCGGGGATTCCTATATAGTCTTAAAGACCACAGCGTCAAGAAGCGGTTCC 180
Query 181 TTGCATCATGATATTCACTACTGGCTCGGTAAAGATTCCAGCCAGGATGAAGCAGGTGCT 240
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 181 TTGCATCACGATATTCACTACTGGCTTGGTAAAGATTCCAGCCAGGATGAAGCCGGTGCA 240
Query 241 GTAGCCGTCATGACTGTTGAATTAGATTCAGCATTAGGTGGACGTGCTGTTCAGTACCGA 300
||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTAGCTGTTATGACAGTTGAATTAGATTCAGCATTAGGTGGGCGTGCTGTTCAGTACCGA 300
Query 301 GAAGTACAGGGTCACGAAACCGAGAAGTTTCTTTCCTACTTCAAACCTTGCATAATACCT 360
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGTACAGGGTCATGAAACGGAGAAGTTTCTTTCCTACTTCAAACCTTGCATAATACCT 360
Query 361 CAAGAAGGTGGAGTTGCTTCAGGGTTCAACCATGTAAAGCCCGAGGAGCATCAGACGCGT 420
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 361 CAAGAAGGTGGAGTTGCTTCCGGGTTCAACCATGTAAAACCCGAGGAGCATCAGACGCGT 420
Query 421 CTGTATATCTGCAAAGGCAAACATGTCGTCCGTGTTAAAGAGGTTCCGTTTGTTCGATCG 480
||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 421 CTGTATATCTGCAAAGGCAAACATGTCGTCC--G-T------GTTCCGTTTGTTCGATCG 471
Query 481 ACTCTCAACCACGAAGACGTTTTTATTCTTGATACAGAGTCTAAAATTTTTCAATTCAGT 540
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 472 ACTCTCAACCACGAAGACGTTTTCATTCTTGATACAGAGTCTAAAATTTTTCAATTCAAT 531
Query 541 GGTTCCAAGTCGAGTATTCAAGAAAGAGCAAAAGCTCTTGAGGTTGTTCAGTACATTAAA 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GGTTCCAAATCGAGTATTCAAGAAAGAGCAAAAGCTCTTGAGGTTGTTCAGTACATTAAA 591
Query 601 GACACTTACCATGATGGAAAGTGCGATATCGCAGCTGTTGAGGATGGGAGGATGATGGCT 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 592 GACACTTACCATGATGGAAAATGCGATATCGCAGCTGTTGAGGATGGGAGGATGATGGCT 651
Query 661 GATGCTGAAGCTGGAGAGTTTTGGGGCTTGTTTGGTGGGTTTGCTCCGCTTCCTAAGAAA 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 652 GATGCTGAAGCTGGAGAGTTTTGGGGCTTGTTTGGTGGGTTTGCTCCTCTTCCTAAGAAA 711
Query 721 CCAGCAGTCAATGATGACGAAACCGCTGCATCTGATGGTATCAAACTTTTCAGTGTCGAG 780
|||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct 712 CCAGCAGTCAATGATGACGAAACCGCTGAATCTGATGGGATCAAACTCTTCAGTGTCGAT 771
Query 781 AAGGGACAGACAGATGCCGTAGAGGCTGAGTGTTTGACGAAAGAGCTTCTGGACACTAAC 840
|||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 772 AAGGGAAAGACAGATGCCGTAGAGGCTGAGTCTTTGACGAAAGAACTTCTGGACACTAAC 831
Query 841 AAATGTTATATTCTCGATTGCGGTCTTGAATTGTTCGTTTGGAAGGGACGAAGTACTTCA 900
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 832 AAATGTTATATTCTCGATTGCGGTCTTGAATTGTTCGTTTGGAAGGGAAGAAATACTTCA 891
Query 901 ATCGACCAAAGAAAGAGCGCAACTGAAGCTGCAGAAGAATTTTTCCGTTCGTCTGAACCG 960
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 892 ATCGACCAAAGAAAGAACGCAACTGAAGCTGCAGAAGAATTTTTCCGCTCGTCTGAACCG 951
Query 961 CCAAAATCAAACCTGGTCAGTGTGATGGAAGGGTATGAAACAGTGATGTTCCGATCTAAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CCAAAATCAAACCTGGTCAGTGTGATGGAAGGGTATGAAACAGTGATGTTCCGATCTAAG 1011
Query 1021 TTTGATTCATGGCCGGCTTCAAGTACCATAGCTGAGCCCCAACAAGGCAGAGGCAAAGTC 1080
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1012 TTTGATTCATGGCCGGCTTCAAGTACCATAGCTGAACCCCAGCAAGGCAGAGGCAAAGTC 1071
Query 1081 GCAGCTCTTTTGCAGCGGCAAGGAGTTAACGTTCAAGGCCTGGTTAAGActtcttcttct 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GCAGCTCTTTTGCAGCGGCAAGGAGTTAACGTTCAAGGCCTGGTTAAGACTTCTTCTTCT 1131
Query 1141 tcttctAAAGACGAACCGAAGCCATACATTGATGGTACAGGAAATCTCCAGGTCTGGCGA 1200
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1132 TCT---AAAGACGAACCGAAGCCATACATTGACGGTACAGGAAATCTCCAGGTCTGGCGA 1188
Query 1201 ATCAATTGTGAAGAAAAGATCCTTCTCGAAGCAGCAGAGCAATCAAAGTTCTATAGCGGG 1260
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1189 ATCAATTGTGAAGAAAAGACCCTTCTCGAGGCAGCAGAGCAATCAAAGTTCTATAGCGGT 1248
Query 1261 GATTGTTATATACTCCAGTACTCATACCCAGGAGAAGACAGAGAGGAACATCTAGTGGGT 1320
|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1249 GATTGTTATATATTCCAATACTCATATCCAGGAGAAGACAGAGAGGAACATCTAGTGGGT 1308
Query 1321 ACTTGGTTTGGCAAGCAAAGCGTTGAGGAAGACAGAGCATCTGCTATTTCTTTGGCAAAC 1380
||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||
Sbjct 1309 ACTTGGTTTGGCAAGCAAAGCGTCGAGGAAGACAGAGCATCCGCTCTTTCCATGGCAAAC 1368
Query 1381 AAGATGGTTGAATCCATGAAGTTTGTGCCGGCTCAGGCTCGCATTAATGAGGGAAAAGAG 1440
|||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 1369 AAGATGGTTGAATCCATGAAGTTTATGCCGGCTCAGGCTCGCATTTACGAGGGAAAAGAG 1428
Query 1441 CCAATTCAGTTTTTTGTGATCATGCAAAGCTTCATCACATTTAAGGGTGGTGTAAGTGAT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1429 CCAATTCAGTTTTTTGTGATCATGCAAAGCTTCATCACATTTAAGGGTGGTCTAAGTGAG 1488
Query 1501 GCTTTCAAAAAGTACATAGCTGAGAACGACATCCCTGATACTACTTACGAAGCAGAAGGT 1560
||||||||||||||||| || || ||||| ||||||||||||||||| ||||||||||||
Sbjct 1489 GCTTTCAAAAAGTACATTGCAGAAAACGAAATCCCTGATACTACTTATGAAGCAGAAGGT 1548
Query 1561 GTTGCACTGTTTCGGGTTCAAGGTTCTGGACCCGAGAACATGCAAGCCATACAGATAGAA 1620
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 GTTGCGTTGTTTCGGGTTCAAGGTTCTGGACCCGAGAACATGCAAGCCATACAGATAGAA 1608
Query 1621 GCGGCTTCCGCAGGACTAAATTCTTCGCACTGTTATATATTACACGGTGATTCTACTGTT 1680
|| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1609 GCAGTTTCCACAGGACTAAATTCTTCACACTGTTATATATTACACGGTGATTCTACTGTT 1668
Query 1681 TTCACTTGGTGTGGCAATCTTACTTCCTCGGAAGATCAAGAACTTATGGAAAGAATGTTG 1740
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1669 TTCACTTGGTGTGGCAATCTGACTTCCTCGGATGATCAAGAACTTATGGAAAGAATGTTG 1728
Query 1741 GATTTGATTAAGCCAAATGAACCCACTAAGGCACAAAAGGAAGGCTCAGAGTCTGAACAG 1800
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1729 GATTTGATTAAGCCAAATGAACCCACTAAGGCACAAAAGGAAGGTTCAGAGTCTGAACAT 1788
Query 1801 TTTTGGGAATTATTAGGAGGCAAATCAGAATATCCGAGCCAAAAGATCAAAAGGGATGGA 1860
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1789 TTTTGGGAATTATTAGGAGGCAAATCAGAATATCCGAGCCAAAAGATCAAAAAGGATGGA 1848
Query 1861 GAGAGTGATCCTCATCTCTTTTCTTGCACATATACAAACGAAAGTCTGAAGG 1912
|||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 1849 GAGAGTGATCCTCATCTCTTCTCTTGCACATTTACAAACGAAAATCTGAAGG 1900
Score = 1541 bits (834), Expect = 0.0
Identities = 931/978 (95%), Gaps = 5/978 (1%)
Strand=Plus/Plus
Query 1914 TACAGAGATCTTCAACTTCACTCAAGATGATTTGATGACTGAAGATATCTTCATACTTGA 1973
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 TACAGAGATCTTCAGCTTCACTCAAGATGATTTGATGACTGAAGATATCTTCATACTTGA 2018
Query 1974 TTGTCACACTGAGGTCTTTGTCTGGGTGGGACAACAAGTTGACCCAAAGAAGAAACCTCA 2033
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 TTGTCACACTGAAATCTTTGTCTGGGTGGGACAACAAGTTGACCCAAAGAAGAAACCTCA 2078
Query 2034 AGCTTTGGACATTGGAGAGAACTTTCTTAAGCATGATTTCCTCCTAGAGAATCTAGCAAG 2093
|| ||| | |||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 2079 AGTTTTAGCCATTGGAGAGAATTTTCTCAAGCACGATTTCCTCCTAGAGAATCTAGCAAG 2138
Query 2094 TGAAACACCGATATACATTGTAACAGAGGGAAACGAACCTCCATTTTTCACTCGGTTCTT 2153
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2139 TGAAACACCAATATATATTGTAACAGAGGGAAATGAACCTCCATTTTTCACTCGGTTCTT 2198
Query 2154 CACCTGGGACTCTTCTAAATCTGGAATGCATGGAGACTCTTTCCAGAGAAAGCTTGCGAT 2213
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2199 CACCTGGGACTCTTCTAAATCTGGAATGCACGGAAACTCTTTCCAGAGAAAGCTTGCGAT 2258
Query 2214 CCTGACAAATAAAGGAAAGCCGCTTCTAGATAAACCTAAAAGGAGAGTCCCTGCATACAG 2273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2259 CCTGACAAATAAAGGAAAGCCGCTTCTAGATAAACCTAAAAGGAGAGTCCCTGCATACAG 2318
Query 2274 TAGCAGGTCCACCGTTCCAGACAAATCGCAGCCTCGGTCCAGAAGTATGACTTTTAGTCC 2333
||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2319 CAGCAGGTCCACAGTTCCTGACAAGTCGCAGCCTCGGTCCAGAAGTATGACCTTTAGTCC 2378
Query 2334 AGACAGGGCCCGCGTGAGGGGACGGTCTCCAGCTTTCAACGCACTTGCAGCAAACTTTGA 2393
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2379 AGACAGGGCCCGCGTGAGGGGACGGTCACCAGCTTTCAACGCACTTGCAGCAAACTTTGA 2438
Query 2394 GAAACTAAATATAAGAAACCAATCAACTCCACCACCTATGGTTAGTCCAATGGTCCGGAA 2453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 GAAACTAAATATAAGAAACCAATCAACTCCACCACCTATGGTTAGTCCAATGGTCCGGAA 2498
Query 2454 GCTTTACCCGAAATCTCATGCCCCAGACCTCTCGAAGATAGCTCCTAAATCCGC---TAT 2510
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2499 GCTTTACCCGAAATCTCATGCCCCAGACCTCTCAAAGATAGCTCCTAAATCCGCGGCTAT 2558
Query 2511 AGCTGCCCGTACAGCGCTTTTTGAAAAACCTACTCCTACTTCTCAAGAACCACCTACTAG 2570
|||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 2559 AGCTGCCCGTACGGCGCTTTTCGAAAAATCTCCTCCTACTTCTCAAGAACCACCTACTAG 2618
Query 2571 CCCCAGTTCTTCAGAAGCTACAAACCAAGCAGAAGCACCAAAATCGACATCAGAGACAAA 2630
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2619 CCCCAGTTCTTCAGAAGCTACTAACCAAGCAGAAGCACCAAAATCGACATCAGAGACGAA 2678
Query 2631 CGAGgaagaagcaatgagcagcatcaatgaagactcaaaagaagaagaagcagaagaaga 2690
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2679 CGAGGAAGAAGCAATGAGCAGCATCCATGAAGATTCAAAAGAAGAAGAAGCAGAAGAAGA 2738
Query 2691 gagcagcCTCCCTACTTTCCCATATGAACGCCTTAAAACCGACTCAGAGGATCCTGTTTC 2750
|||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||
Sbjct 2739 TAGCAGCCTCCCTACTTTCCCATATGAGCGCCTCAAAACCGACTCAGAGAATCCTGCTTC 2798
Query 2751 AGATGTCGACCTCACTAGAAGAGAGGCATACTTGACTTCAGT-AGAGTTCAAGGAGAAGT 2809
|||| |||||||||| ||||||||||||||| |||||||| | ||||||||| |||||||
Sbjct 2799 AGATATCGACCTCACAAGAAGAGAGGCATACATGACTTCA-TCAGAGTTCAAAGAGAAGT 2857
Query 2810 TTGAGATGACAAAGAATGAGTTCTACAAACTGCCTAAATGGAAACAAAACAAGCTCAAAA 2869
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2858 TTGAGATGACAAAGAACGAGTTCTATAAACTGCCTAAATGGAAACAAAACAAGCTGAAAA 2917
Query 2870 TGTCTGTCAATCTCTTCT 2887
||||||| ||||||||||
Sbjct 2918 TGTCTGTTAATCTCTTCT 2935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109052371435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5