BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57330.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950418 jgi|Araly1|950418|scaffold_802305.1 1618 0.0
> Ahg950418 jgi|Araly1|950418|scaffold_802305.1
Length=979
Score = 1618 bits (876), Expect = 0.0
Identities = 936/966 (97%), Gaps = 0/966 (0%)
Strand=Plus/Plus
Query 171 TACTCTCCATGGCGACGGAGCGTCATCATTTTGAGCTTGCTAAAGGCATCAATGGCCTTG 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TACTCTCCATGGCGACGGAGCGTCATCATTTTGAGCTTGCTAAAGGCATCAATGGCCTTG 72
Query 231 ATAAGATCGTTCTCCGCGAGTCTCGCGGCCGCTCTGCAGAGGTATACTTGTATGGAAGTC 290
|||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 73 ATAAGATCATCCTCCGCGAGTCTCGCGGCCGCTCTGCCGAGGTATACTTGTATGGAAGTC 132
Query 291 ATGTAACTTCTTGGAAGAATGAGAACGGAGAGGAGTTACTTCACCTCAGTAGCAAGGCCA 350
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 133 ATGTGACTTCTTGGAAGAATGAGAATGGAGAAGAGTTACTTCACCTCAGTAGCAAGGCCA 192
Query 351 TATTCAAGCCCCCGAAACCAATACGTGGAGGGATTCCCCTATGTTTTCCACAATTCAGTA 410
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 193 TATTCAAGCCCCCGAAACCAATACGTGGAGGGATTCCCCTATGCTTTCCACAATTCAGTA 252
Query 411 ACTTTGGTACACTCGAATCACATGGCTTTGCTAGAAATAGGATCTGGGAAGTCGAGGCTA 470
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 253 ACTTTGGTACACTTGAATCACATGGCTTTGCTAGAAATAGGATCTGGGAAGTTGAGGCTA 312
Query 471 ACCCACCTCCGTTGCCATTAAATTCTTGTTCTAGTGCTTTTGTTGACCTGATCCTAAGGC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 ACCCACCTCCGTTGCCATTAAATTCTTGTTCTAGTGCTTTTGTTGACCTGATCCTAAGGC 372
Query 531 CAACTGAAGACGATCTGAAAATCTGGCCTAACAATTTTGAGTTCAGGCTGAGGATAGCCT 590
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 373 CAACTGAAGAAGATCTGAAAATCTGGCCTCACAATTTTGAGTTCAGGCTGAGGGTAGCCT 432
Query 591 TGGGGACCGAAGGAGAATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TGGGGACCGAAGGAGAATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAA 492
Query 651 AGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGTGAAG 710
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct 493 AGCCGTTTACATTCACATTTGCTTATCATACTTATTTCTCTGTCTCAGACATCAATGAAG 552
Query 711 TACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTT 770
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 553 TACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTAAAGAACAGAGAACGTT 612
Query 771 TTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAGTTGACAAGATTTATCTAAGCA 830
|||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||
Sbjct 613 TTACCGAACAAGGCGACGCAATAACGTTTGAATCCGAAATTGACAAGATTTATCTAAGCA 672
Query 831 CGCCAACAAAGATTGCTATTTTGGATCACGAGAAAAAGAGGACTTTCGTTATTCGCAAGG 890
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 673 CGCCTACAAAGATTGCTATTTTGGACCACGAGAAAAAGAGGACTTTCGTTATTCGCAAGG 732
Query 891 ACGGGCTTGCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAATCAAAGACGATCTCTG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 ACGGGCTTGCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAATCAAAGACGATCTCTG 792
Query 951 ACTTGGGAGATGAAGACTATAAGCATATGCTTTGTGTGGAAGCTGCGGCTATCGAGAGAC 1010
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 793 ACTTGGGAGATGAAGACTATAAGTATATGCTTTGTGTGGAAGCTGCGGCTATAGAGAGAC 852
Query 1011 CGATCACATTGAAACCCGGTGAAGAATGGAAAGGAAGACTCGAACTCTCTGCAGTTCCTT 1070
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 853 CAATCACATTGAAACCGGGTGAAGAATGGAAAGGAAGACTCGAACTCTCTGCGGTTCCTT 912
Query 1071 CTAGTTACTCCAGTGGACAGCTTGACCCCAAGAAAGTCCTTGAGTGACTCTTTCAAACTC 1130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 CTAGTTACTCCAGTGGACAGCTTGACCCCAAGAAAGTCCTTGAGTGACTCTTTCAAACTT 972
Query 1131 CAAAAA 1136
|||||
Sbjct 973 AAAAAA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5