BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57345.1
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495834 jgi|Araly1|495834|fgenesh2_kg.8__1650__AT5G57345.1 935 0.0
> Ahg495834 jgi|Araly1|495834|fgenesh2_kg.8__1650__AT5G57345.1
Length=663
Score = 935 bits (506), Expect = 0.0
Identities = 625/680 (92%), Gaps = 18/680 (3%)
Strand=Plus/Plus
Query 52 ATGTATTTCGCCGCCATAGCTTCTTCACGACAAAGCTTTTTGTCAAACAATTTCAGTTTC 111
|||| |||||||||| |||||||| |||||||||||||||| || ||| ||||||||||
Sbjct 1 ATGTCTTTCGCCGCCGTAGCTTCTACACGACAAAGCTTTTTATCGAACTCTTTCAGTTTC 60
Query 112 CAACACAGTTTTAAACCCAAATCCAATGTTAACCTCACTCGTCCTAATTCAATCTGTTGT 171
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CGACACAGCTTTAAACCCAAATCCAATGTTAACCTCACTCGTCCTAATTCAGTCTGTTGT 120
Query 172 AAATCTTCACACCACGACGACGAAACTGATTCTTCTCGGAAAAATGAAAATCAGCTGGCG 231
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 121 AAATCTTCACACCACGACGACGAAACTGATTCTTCCCGGAAAAATGAGAATCAGCTGGCG 180
Query 232 AAGTTGGCAATCGCGACGCTAGCGGTTGGCGTTTTGGCTTTGGGAAGTGTTGGGGATGCG 291
|| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct 181 AAATTGGCAATCGCGACGCTAGCTGTTGGCGTTTTGGCTTTCGGAAGCGTTGGAGATGCG 240
Query 292 TTTGCGGCCAAAAGCGGTGGAAGAATCGGCGGTCAAGCGTTTCGGTCTTCAGCTCCTCGT 351
|||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 241 TTTGCGGCCAAAAGCGGTGGTAGAATCGGTGGTCAAGCGTTTCGCTCTTCAGCTCCTCGC 300
Query 352 CCTCCTCCCAGAATTAACAATCGATCAAGGACCAACATCTACGTGAATCCTCAGGTTGCA 411
|||||||| ||||||||||| || || ||||||||||||||||||||||||| |||||||
Sbjct 301 CCTCCTCCTAGAATTAACAACCGCTCGAGGACCAACATCTACGTGAATCCTCCGGTTGCA 360
Query 412 CCACCTTTGATCGGTGGCTATGGATATGGTTACGGAGGTTACGGATGGTCACCGTTTTCC 471
||||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 361 CCACCTTTGATCGGTGGGTATGGATATGGTTACGGCGGTTACGGATTGTCACCATTTTCC 420
Query 472 TTTTTTGCCCCTGGTCCTGCGGTGGCAGTAGGTGTTGGCGGTGGCTTTGACCTCCTACTT 531
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 421 TTTTTTGCCCCTGGTCCTGCGGTGGCAGTTGGTGTTGGCGGTGGCTTCGACCTCCTACTT 480
Query 532 CTCTTCATGTTTTTTGGAGCCGCTTCAGCCGTCGCTAGAAACTTTTTCCGATCAAGAAAT 591
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 CTCTTCATGTTTTTTGGAGCCGCTTCAGCCGTTGCTAGAAACTTTTTCCGATCAAGAAAT 540
Query 592 GATGAAGATGACGAAGACGACTATTAGAGGAGAAAACGGAGAGAGGCTTATGTAACAATA 651
||||||||||||||||| ||||||||||| || | |||||||||||| |
Sbjct 541 GATGAAGATGACGAAGATGACTATTAGAG-AG-----G--------CTTATGTAACAACA 586
Query 652 GTCATACATACGATTTTGTGTaaaaaaaT-ATGATGGAAGAAGACGGATATATGTGGAAA 710
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||
Sbjct 587 GTCATACATACGATTTTGTGTAAAAAAATTACGATGGAAGAAGACGGATAT--GTG-AAA 643
Query 711 TCTTGAAATAAGTAACTAAA 730
|||||||||| |||||||||
Sbjct 644 TCTTGAAATAGGTAACTAAA 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28515941916
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5