BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57350.1
Length=3226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327309 jgi|Araly1|327309|fgenesh1_pm.C_scaffold_6002529 1175 0.0
> Ahg327309 jgi|Araly1|327309|fgenesh1_pm.C_scaffold_6002529
Length=1041
Score = 1175 bits (636), Expect = 0.0
Identities = 879/994 (88%), Gaps = 26/994 (3%)
Strand=Plus/Plus
Query 1008 ATGGCTGGTATGGATGTTCTGTGCAGCGATAAAACCGGGACTCTCACGCTAAACAAGCTT 1067
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTGGTATGGATGTTCTGTGCAGCGATAAAACCGGGACTCTCACTCTAAACAAGCTT 60
Query 1068 AGTGTTGACAAGAATCTTATTGAGGTTTATTG-TAAAGGCGTTGAGAAAGATGAAGTTTT 1126
||||||||||||||||| ||||||||||| || ||||| | |||||||||| || ||||
Sbjct 61 AGTGTTGACAAGAATCTGATTGAGGTTTA-TGCTAAAGACTTTGAGAAAGAACAACTTTT 119
Query 1127 GCTTTTTGCTGCTAGAGCTTCAAGAGTTGAGAACCAAGATGCTATTGATGCTGCTATGGT 1186
|||||| ||||| |||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 120 GCTTTTAGCTGCGAGAGCTTCAAGAACAGAGAATCAAGATGCTATTGATACTGCTATGGT 179
Query 1187 TGGAATGCTC--GCTGATCCAAAAGAGGCAAGAGCTGGAATCAGAG-AGATTCACTTCCT 1243
||| || ||| ||||||||||||||||||||||||||||| |||| || | ||||||||
Sbjct 180 TGG-AT-CTCTTGCTGATCCAAAAGAGGCAAGAGCTGGAATTAGAGAAG-TGCACTTCCT 236
Query 1244 ACCATTCAATCCAGTTGATAAGCGAACCGCTTTGACGTT-TATCGACAGCAACGGAAACT 1302
|||||||||||||||||||||||||||||||| || || |||||| ||||||||||||
Sbjct 237 TCCATTCAATCCAGTTGATAAGCGAACCGCTTTAAC-TTATATCGATGGCAACGGAAACT 295
Query 1303 GGCACCGAGTAAGCAAAGGAGCTCCCGAGCAGATTCTTGATCTCTGTAACGCGAGAGCTG 1362
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 296 GGCACCGAGTAAGCAAAGGAGCTCCCGAGCAGATTCTTGATCTTTGCAACGCAAGAGCTG 355
Query 1363 ATCTGAGGAAGAGAGTCCACTCTACAATCGATAAGTACGCTGAGCGTGGACTTAGGTCAT 1422
|||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 356 ATCTGAGGAATAGTGTCCACTCTGCAATCGATAAGTACGCTGAGCGTGGACTCAGGTCAT 415
Query 1423 TAGCTGTTTCAAGACAGACTGTACCAGAGAAAACAAAAGAAAGCTCTGGT-AGTCCATGG 1481
|||||||| |||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 416 TAGCTGTTGCAAGACAGACTGTACCTGAGAAAACAAAAGAAAGCTCTGGTGA-TCCATGG 474
Query 1482 GAATTTGTTGGTGTGTTGCCTCTGTTTGATCCTCCAAGACATGATAGTGCCGAAACCATT 1541
||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 475 GAATTTGTTGGTGTGTTGCCTTTATTTGATCCTCCAAGACATGATAGTGCAGAAACCATT 534
Query 1542 AGAAGAGCTCTAGACCTCGGTGTCAATGTCAAGATGATTACTGGTGATCAACTTGCTATT 1601
| ||||||| |||||||||||||||| || ||||||||||| | ||||||||||||||||
Sbjct 535 AAAAGAGCTTTAGACCTCGGTGTCAACGTGAAGATGATTACCGATGATCAACTTGCTATT 594
Query 1602 GCGAAAGAGACAGGACGTAGACTTGGAATGGGATCAAACATGTACCCA-TCCTCTTCTTT 1660
|| ||||| || |||||||||||||| |||||| |||| ||||||||| || | || ||
Sbjct 595 GCAAAAGAAACTGGACGTAGACTTGGTATGGGAACAAATATGTACCCAATCA-CATCATT 653
Query 1661 ACTCGGTAAACACAAAGACGA-AGCCATGGCTCAC-ATTCCTGTTGAGGATTTGATTGAG 1718
||||||||| ||||||||||| | | || ||||| || |||||||| || | ||||| |
Sbjct 654 ACTCGGTAACCACAAAGACGATATC-ATCACTCACCAT-CCTGTTGATGAGTCGATTGCG 711
Query 1719 AAAGCTGATGGCTTTGCTGGAGTCTTCCCAGAGCACAAATACGAAATTGTGAAGAAGTTG 1778
| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 ATAGCTGATGGATTTTCCGGAGTCTTCCCAGAGCACAAATACGAAATTGTGAAGAAGTTG 771
Query 1779 CAAGAAA-GGAAGCATATCTGTGGTATGACTGGAGATGGAGTGAATGACGCTCCAGCATT 1837
||||| | || |||||| |||||||||| ||| ||| ||||| ||||| |||| |||||
Sbjct 772 CAAGAGATGGG-GCATATTTGTGGTATGATTGGTGATCGAGTGGATGACACTCCTGCATT 830
Query 1838 GAAGAAAGCGGATATAGGTATCGCTGTGGCGGATGCAACTGACGCTGCACGAGGTGCTTC 1897
|||||||||||||| ||||||||| | |||||||| ||||| |||| | ||| ||||||
Sbjct 831 AAAGAAAGCGGATATTGGTATCGCTTTTGCGGATGCTACTGAAGCTGTAAGAGCTGCTTC 890
Query 1898 TGATATTGTCCTCACCGAGCCAGGTCTCAGTGTGATCATCAGCGCGGTTCTAACCAGTAG 1957
|||||| || || || ||||| || |||||||| ||||||| |||||||||||| ||| |
Sbjct 891 TGATATCGTTCTGACTGAGCCTGGACTCAGTGTTATCATCAACGCGGTTCTAACTAGTCG 950
Query 1958 AGCCATCTTC-CAGAGAA-TGAAGA-ACTACACA 1988
||||| ||| || | || |||| | ||||||||
Sbjct 951 AGCCA-CTTTGCA-ACAAATGAA-ATACTACACA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121746176027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5