BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57360.2
Length=2226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950423 jgi|Araly1|950423|scaffold_802310.1 2920 0.0
> Ahg950423 jgi|Araly1|950423|scaffold_802310.1
Length=1872
Score = 2920 bits (1581), Expect = 0.0
Identities = 1736/1813 (96%), Gaps = 2/1813 (0%)
Strand=Plus/Plus
Query 149 TCTGGTAACTATTTGAATTTTCATGGAGTGGGACAGTGGTTCCGATCTAAGCGCCGATGA 208
||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCGTAACTCTTTGAAATTTCATGGAGTGGGACAGTGGTTCCGATCTAAGCGCCGATGA 60
Query 209 TGCTTCGTCACTGGCGGATGATGAAGAGGGAGGTCTTTTTCCCGGAGGTGGACCAATTCC 268
|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 61 TGCTTCGTCAGTGGCGGATGATGAAGAGGGAGGTCTTTTTCCCGGCGGCGGACCAATTCC 120
Query 269 ATATCCCGTTGGGAATTTGCTTCACACGGCGCCTTGTGGATTCGTTGTTACTGATGCCGT 328
|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 121 ATTTCCCGTTGGGAATTTGCTTCATACTGCGCCTTGTGGATTCGTTGTTACTGATGCCGT 180
Query 329 TGAGCCGGACCAACCTATTATATATGTCAACACCGTCTTCGAAATGGTTACAGGGTATCG 388
|||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 181 TGAGCCGGACCACCCTATTATCTATGTCAACACCGTCTTCGAAATGGTTACTGGATATCG 240
Query 389 TGCTGAGGAAGTTCTCGGAGGAAATTGCCGCTTCTTGCAATGTAGAGGACCGTTTGCTAA 448
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCTGAGGAGGTTCTCGGAGGAAATTGCCGCTTCTTGCAATGTAGAGGACCGTTTGCTAA 300
Query 449 AAGAAGGCATCCATTAGTTGACTCTATGGTTGTTTCCGAGATAAGAAAATGTATTGATGA 508
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 AAGAAGGCATCCATTAGTTGACTCTATGGTTATTTCCGAGATAAGAAAATGTATTGATGA 360
Query 509 GGGCATTGAATTTCAAGGCGAGTTGTTGAACTTTAGGAAAGATGGATCTCCGTTGATGAA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGCATTGAATTTCAAGGCGAGTTGTTGAACTTTAGGAAAGATGGATCTCCGTTGATGAA 420
Query 569 TAGATTGCGG-TTGACTCCTATTTATGGAGACGATGATACTATTACCCATATAATTGGAA 627
|||| ||||| || ||||||||||||||||| || ||||| || ||||||||||| || |
Sbjct 421 TAGACTGCGGCTT-ACTCCTATTTATGGAGATGACGATACCATCACCCATATAATCGGCA 479
Query 628 TCCAGTTCTTTATCGAGACAGACATTGACCTTGGACCTGTTCTTGGATCTTCAACAAAAG 687
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 TCCAGTTCTTTATTGAGACAGACATTGACCTTGGACCCGTTCTTGGATCTTCAACAAAAG 539
Query 688 AAAAGTCAATTGATGGGATATACTCAGCTTTAGCTGCTGGGGAGCGGAATGTTTCCCGAG 747
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 AAAAATCAATCGATGGGATATACTCAGCTTTAGCTGCTGGGGAGCGAAATGTTTCCCGAG 599
Query 748 GAATGTGTGGGTTATTCCAGCTGAGTGACGAGGTTGTGTCTATGAAGATATTGTCACGCC 807
| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 600 GGATGTGTGGATTATTCCAGCTGAGTGATGAGGTTGTGTCTATGATGATATTGTCACGCC 659
Query 808 TGACACCAAGAGACGTTGCATCTGTTAGCTCTGTGTGCCGCAGGCTATATGTGCTGACAA 867
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 660 TGACACCAAGAGACGTTGCGTCTGTTAGCTCTGTATGTCGCAGGCTATATGTGCTGACAA 719
Query 868 AGAATGAGGATCTTTGGCGAAGGGTTTGTCAGAATGCATGGGGAAGTGAAACAACACGGG 927
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 720 AGAACGAGGATCTTTGGCGAAGGGTTTGTCAGAATGCATGGGGAAGTGAGACAACACGCG 779
Query 928 TATTAGAGACTGTTCCTGGTGCTAAAAGACTCGGTTGGGGCCGCTTGGCTAGAGAACTGA 987
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 780 TATTAGAGACTGTTCCTGGTGCTAAAAGACTCGGTTGGGGGCGCCTGGCTAGAGAACTGA 839
Query 988 CCACCCTTGAAGCTGCAGCTTGGAGAAAACTTTCGGTTGGAGGTTCTGTTGAGCCTTCTC 1047
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 840 CCACCCTTGAAGCTGCAGCTTGGAGAAAACTTACTGTTGGAGGTTCTGTTGAGCCGTCTC 899
Query 1048 GCTGTAATTTTAGTGCTTGTGCTGTCGGGAACAGAGTTGTTCTGTTTGGAGGAGAAGGTG 1107
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 GCTGTAATTTCAGTGCTTGTGCTGTCGGGAACAGAGTGGTTCTGTTTGGAGGAGAAGGTG 959
Query 1108 TGAATATGCAGCCTATGAATGATACCTTTGTTTTAGATCTGAATTCTGATTACCCTGAAT 1167
|| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 960 TGGATATGCAGCCTATGAATGATACCTTTGTTTTAGATCTTAATTCGGATTACCCTGAAT 1019
Query 1168 GGCAACATGTCAAAGTGAGCTCCCCTCCTCCAGGACGCTGGGGCCACACGCTCACTTGTG 1227
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1020 GGCAACATGTCAAAGTGAGCTCCCCTCCTCCGGGACGCTGGGGCCACACGCTTTCTTGTG 1079
Query 1228 TAAATGGCTCCAATCTGGTTGTATTTGGTGGCTGTGGTCAGCAAGGTTTGCTGAACGATG 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TAAATGGCTCCAATCTGGTTGTATTTGGTGGCTGTGGTCAGCAAGGTTTGCTGAACGATG 1139
Query 1288 TGTTTGTCTTGAATCTCGATGCTAAGCCGCCTACTTGGAGGGAAATTTCGGGTTTGGCTC 1347
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1140 TGTTTGTCTTGAATCTCGATGCCAAGCCGCCTACTTGGAGGGAGATTTCGGGTTTGGCTC 1199
Query 1348 CGCCTCTACCAAGATCATGGCACAGCTCATGCACCCTTGACGGAACCAAACTGATAGTCT 1407
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1200 CACCTCTACCAAGATCATGGCATAGCTCATGCACCCTTGACGGAACCAAACTGATCGTCT 1259
Query 1408 CTGGAGGCTGTGCAGATTCCGGCGTTCTTCTAAGTGACACGTTCCTCCTCGACCTTTCAA 1467
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAGGAGGCTGTGCAGATTCCGGCGTTCTTCTAAGTGACACGTTCCTCCTCGACCTTTCAA 1319
Query 1468 TAGAGAAACCAGTGTGGAGAGAGATTCCAGCTGCCTGGACTCCGCCTTCCCGGTTAGGCC 1527
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1320 TAGAGAAACCAGTGTGGAGAGAGATTCCAGCTGCCTGGACCCCGCCTTCCCGGTTAGGCC 1379
Query 1528 ACACACTATCGGTTTATGGAGGAAGAAAGATCTTGATGTTTGGTGGTCTTGCTAAGAGCG 1587
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1380 ACACACTATCGGTTTATGGAGGAAGAAAGATCTTAATGTTTGGTGGTCTTGCTAAAAGCG 1439
Query 1588 GGCCTTTGAAATTCCGTTCGAGTGATGTCTTCACAATGGATCTAAGCGAAGAGGAGCCTT 1647
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGCCTTTGAGATTCCGTTCGAGCGATGTCTTCACAATGGATCTAAGCGAAGAGGAGCCTT 1499
Query 1648 GTTGGAGGTGTGTGACCGGTAGCGGAATGCCTGGAGCAGGAAACCCAGGAGGAGTAGCAC 1707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1500 GTTGGAGGTGTGTGACCGGTAGCGGAATGCCTGGAGCAGGAAACCCAGGAGGAGTAGCCC 1559
Query 1708 CACCACCAAGGCTAGATCACGTTGCAGTTAACCTCCCTGGAGGCAGAATCTTGATATTTG 1767
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1560 CACCACCGAGGCTGGATCACGTGGCAGTTAACCTCCCTGGAGGCAGAATCTTGATCTTTG 1619
Query 1768 GCGGCTCAGTGGCAGGGCTTCACTCAGCGTCTCAGCTTTATCTACTTGACCCAACGGAGG 1827
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GCGGTTCGGTGGCAGGGCTTCACTCAGCGTCTCAGCTTTATCTACTTGACCCAACGGAGG 1679
Query 1828 ACAAACCGACTTGGAGAATACTAAACATTCCAGGAAGACCGCCTCGGTTTGCTTGGGGAC 1887
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1680 ACAAACCGACTTGGAGAATACTAAACATCCCAGGGAGACCGCCTCGGTTTGCTTGGGGAC 1739
Query 1888 ATGGCACTTGTGTTGTGGGAGGAACACGAGCGATAGTGCTAGGTGGTCAGACCGGAGAAG 1947
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1740 ACGGCACTTGTGTTGTGGGAGGAACACGAGCCATAGTGCTGGGTGGTCAGACCGGAGAAG 1799
Query 1948 AATGGATGCTAAG 1960
| |||||||||||
Sbjct 1800 AGTGGATGCTAAG 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83798539000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5