BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57370.1
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495837 jgi|Araly1|495837|fgenesh2_kg.8__1653__AT5G57370.1 1009 0.0
> Ahg495837 jgi|Araly1|495837|fgenesh2_kg.8__1653__AT5G57370.1
Length=713
Score = 1009 bits (546), Expect = 0.0
Identities = 668/723 (92%), Gaps = 23/723 (3%)
Strand=Plus/Plus
Query 28 GAAATTGGTTAAACCCTGACACTAGCACCTTCCTCAGTCGCATCACCACCATGTCAGAGC 87
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 1 GAAATTGGTTAAACCCTGACACTACCACCTCCCTCAGTCGCGTCACCACCATGTCAGAGC 60
Query 88 GCGACCGCCGCGAACGAGAGAGGGATAAGGACCGTGAAC-CAGACCGTGATAGACGCCGA 146
||||||||| |||||||| |||||||| ||||||||||| | ||||||||||||||||||
Sbjct 61 GCGACCGCCACGAACGAGGGAGGGATAGGGACCGTGAACGC-GACCGTGATAGACGCCGA 119
Query 147 GGTAGAGACGACCGTGACCGTGACCGTGATCGAGACCGGGAAAGAGATAGAGAGCGCGAC 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGTAGAGACGACCGTGACCGTGACCGTGATCGAGACCGGGAAAGAGATAGAGAGCGCGAC 179
Query 207 CGTGACCGAGGGCTTAGAAACAAAAAATCCCGATCTCGTACTCCAGACCACCACGCTCGT 266
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTGACCGAGGGCTAAGAAGCAAGAAATCCCGATCTCGTACTCCAGACCACCACGCTCGT 239
Query 267 GCTCGCCACGTGCGCTCTCCGGAGAGGTATCGCTCTCGTTCCCGCTCGATTGACCGTGAC 326
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 GCTCGCCACGTGCGTTCTCCGGAGAGATATCGCTCTCGTTCCCGCTCGATTGACCGTGAC 299
Query 327 CGGGACCGGGACCGTCAACGACACCACAGGCGCAGGTCTCCTTCTCCAGATGC-TCCGTC 385
|||||||| |||||||||||||||||||||| ||||||| |||||||| || |||
Sbjct 300 CGGGACCG------TCAACGACACCACAGGCGCAGGACTCCTTCCCCAGATGCGTC-GTC 352
Query 386 GCGAAAACGGCCTCGCCAGGGTTCAGTAGACGATGAGAAAGAAAGGAATCGCAAAAGA-G 444
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |
Sbjct 353 GCGAAAACGGCCTCGCCAGGGTTCAGCAGACGATGAGAAGGAAAGGAATCGCAAACGAAG 412
Query 445 TAGTGA-CTGATTCCGTTGACGAGAATGCGT-----CT-ACTATTACTAAGAAGAAGGAT 497
| || | |||||| ||||||||||| || | || |||| ||||||||||||||||
Sbjct 413 T-GT-ATCTGATTTCGTTGACGAGATTGGGAAAGAGCTTACTACTACTAAGAAGAAGGAT 470
Query 498 AAACAACCAAGTGATGCTGCTG---ATAATGGCGGAGGCGAAGATGAAGAAGGAATGGAT 554
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 471 AAACAACCAAGTGATGCTGCTGCTGATAATGGCGGAGGCGAAGCTGAAGAAGGAATGGAT 530
Query 555 GTGAATGAGATTGAGATGATGAAGATGTTAGGGATTCCTACTGGATTTGATTCCACAAAA 614
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 531 GTGAATGAGGTTGAGATGATGAAGATGTTAGGGATTCCTACTGGATTTGATTCCACCAAA 590
Query 615 GGCAAACCAGTTGCTGGTGCTGATGTTAGTGGTATTAGAGCTGTAACTAAGCGTCAGCCA 674
|| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 591 GGTAAACCAGTTGCTGGTGCTGATGTTAGTGGGATTAGAGCTGTGACCAAGCGTCAGCCA 650
Query 675 AGACAGTACATGAACCGTCGCGGTGGATTTAACCGTCCTCTACCGGCCGAGCGTAATCGC 734
||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 651 AGACAGTACATGAACCGTCGCGGTGGATTTAACCGTCCTTTGCCTGCTGAGCGTAATCGC 710
Query 735 TAG 737
|||
Sbjct 711 TAG 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37779810747
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5