BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G57390.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495839 jgi|Araly1|495839|fgenesh2_kg.8__1655__AT5G57390.1 2462 0.0
> Ahg495839 jgi|Araly1|495839|fgenesh2_kg.8__1655__AT5G57390.1
Length=1660
Score = 2462 bits (1333), Expect = 0.0
Identities = 1578/1692 (93%), Gaps = 34/1692 (2%)
Strand=Plus/Plus
Query 1 CCTATTCCCAAAGATGAAGAACAATAACAACAAAtcttcttcttcttctagctatgattc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTATTTCCAAAGATGAAGAACAATAACAACAAATCTTCTTCTTCTTCTAGCTATGATTC 60
Query 61 ttctttgtctccttcttcttcatcctcctcccaccagaactggctctctttctctctctc 120
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTTTGTCTCCTTCTTCTTCATCTTCCTCCCACCAGAACTGGCTCTCTTTCTCTCTCT- 119
Query 121 cAACAATAACAACAACTTCAATTCTTCCTCAAACCCTAATCTCACTTCCTCCACATCAGA 180
| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 C--CAAT---AACAACTTCAATTCTTCCTCAAACCCTAATCTCACTTCCTCTACATCAGA 174
Query 181 TCATCATCATCCTCACCCTTCTCACCTCTCTCTCTTTCAAGCTTTCTCCACTTCTCCAGT 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 175 TCATCATCATCCTCACCCTTCTCATCTCTCTCTCTTTCAAGCTTTCTCCACTTCTCCAGT 234
Query 241 CGAACGGCAAGATGGGTCACCGGGAGTTTCACCCAGCGATGCCACGGCGGTTCTTTCCGT 300
||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| |
Sbjct 235 CGAACGGCAAGATGGGTCACCTGGAGTTTCAACCGGCGATGCCACGGCGGTTCTTTCCAT 294
Query 301 ATACCCCGGCGGTCCTAAACTTGAGAACTTCCTCGGCGGAGGAGCCTCAACGACGACAAC 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 295 TTACCCCGGCGGTCCTAAACTTGAGAACTTCCTCGGCGGAGGAGCCACAACGACGACAAC 354
Query 361 AAGACCAATGCAACAAGTGCAATCTCTTGGCGGCGTTGTCTTCTCTTCCGACCTACAGCC 420
|||| |||||||||||||||||||||| || || |||||||||||||||||| |||||||
Sbjct 355 AAGATCAATGCAACAAGTGCAATCTCTCGGAGGTGTTGTCTTCTCTTCCGACTTACAGCC 414
Query 421 ACCGCTTCATCCTCCGTCCGCCGCCGAGATCTACGACTCTGAGCTCAAGTCAATAGCCGC 480
||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 415 ACCGCTTCATCCTCCCTCCGCAGCCGAGATCTACGACTCGGAGCTCAAATCAATAGCCGC 474
Query 481 TAGCTTCCTAGGAAACTACTCCGGTGGACACTCGTCGGAGGTCTCTAGCGTACATAAACA 540
||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 475 TAGCTTCCTCGGAAACTACTCCGGTGGACACTCGTCAGAAGTCTCTAGCGTTCATAAGCA 534
Query 541 ACAACCGAATCCTCTAGCTGTCTCAGAGGCTTCGCCTACTCCGAAGAAGAACGTAGAGAG 600
||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 535 ACAACAGAACCCTCTAGCTGTCTCAGAGGCTTCGCCCACTCCAAAGAAGAACGTAGAGAG 594
Query 601 TTTTGGACAACGTACCTCGATTTATAGAGGAGTCACAAGACATAGATGGACTGGAAGATA 660
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 595 TTTTGGACAACGTACTTCGATTTATAGAGGAGTCACAAGACATCGATGGACTGGAAGATA 654
Query 661 CGAAGCTCATCTATGGGATAATAGTTGCCGAAGAGAAGGCCAAAGCAGAAAAGGAAGACA 720
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 655 CGAAGCTCATCTATGGGATAATAGTTGCCGAAGAGAAGGCCAAAGTAGAAAAGGAAGAC- 713
Query 721 AGTTTATTTAGGTGGTTATGATAAGGAAGATAAAGCAGCTAGAGCTTACGACCTTGCAGC 780
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 714 -----A---AGGTGGTTATGATAAAGAAGAGAAAGCAGCTAGAGCTTACGACCTTGCAGC 765
Query 781 TCTTAAGTATTGGGGTCCTACAACTACGACTAATTTCCCGATATCAAATTACGAATCTGA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 766 TCTTAAGTATTGGGGTCCTACAACTACGACTAATTTCCCGATATCAAATTACGAGTCTGA 825
Query 841 ACTTGAAGAAATGAAACACATGACTCGACAAGAGTTCGTTGCTTCTTTAAGACGGAAAAG 900
||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 826 ACTTGAAGAGATGAAACACATGACTCGACAAGAGTTCGTTGCTTCTCTAAGAC------G 879
Query 901 CAGTGGATTCTCTAGGGGTGCCTCCATGTACAGAGGCGTCACTAGACATCATCAGCATGG 960
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 880 CAGTGGATTCTCTAGGGGTGCCTCCATGTACAGAGGTGTCACTAGACATCATCAGCATGG 939
Query 961 TCGATGGCAGGCACGAATTGGAAGAGTTGCAGGCAACAAAGACCTTTATCTTGGCACATT 1020
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 940 TCGATGGCAGGCACGAATTGGAAGAGTTGCCGGCAACAAAGACCTTTATCTTGGCACATT 999
Query 1021 TAGCACTCAAGAGGAAGCTGCAGAAGCTTATGATATAGCAGCGATCAAATTCCGCGGTCT 1080
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1000 TAGCACTCAAGAGGAAGCTGCAGAAGCTTACGATATAGCAGCGATCAAATTCCGCGGTCT 1059
Query 1081 AAATGCAGTCACCAATTTCGACATCAGTCGATATGATGTCAAATCAATTGCTAGCTGTAA 1140
||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1060 AAATGCAGTTACCAATTTCGACATCAGTCGATATGATGTCAAATCTATAGCTAGTTGTAA 1119
Query 1141 TCTCCCTGTGGGTGGACTAATGCCTAAACCTTCTCCAGCAACCGCAGCGGCTGACAAAAC 1200
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1120 TCTCCCTGTGGGTGGACTAATGCCTAAACCGTCTCCAGCAACCGCAGCAGCTGAGAAAAC 1179
Query 1201 CGTTGATCTTTCTCCATCCGACTCTCCATCTCTAACCACACCGTCCCTCACGTTCAATGT 1260
||||||||| ||| |||||||| ||||||| | || |||||||| || || ||||||||
Sbjct 1180 CGTTGATCTATCTGCATCCGACACTCCATCACCGACGACACCGTCTCTGACCTTCAATGT 1239
Query 1261 GGCAACACCGGTCAATGACCATGGAGGAACTTTTTACCACACTGGTATACCAATCAAACC 1320
||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1240 GGCAACAACGGTCCATGACCATGGAGGAACTTTTTACCACACTGGAATACCAATCAAACC 1299
Query 1321 AGACCCGGCTGATCATTATTGGTCCAACATCTTTGGATTCCAGGCAAACCCGAAAGCAGA 1380
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1300 AGACCCGGCTGATCATTATTGGTCCAGCATCTTTGGATTCCAGGCAAACCCGAAAGCCGA 1359
Query 1381 AATGCGACCATTAGCAAACTTTGGGTCGGATCTTCATAACCCTTCTCCTGGTTATGCTAT 1440
||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1360 GATGCGACCAATAGCAACCTTTGGGTCGGATCTTCATAACCCCTCTCCAGGTTATGCTAT 1419
Query 1441 AATGCCGGTAATGCAGGAAGGTGAAAACAACTTTGGTGGTAGTTTTGTTGGGTCTGATGG 1500
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1420 AATGCCGGTAATGCAAGAAGGCGAAAACAACTTTGGTGGTAGTTTTGTTGGGTCTGAAGT 1479
Query 1501 GTATAACAATCATTCCGCTGCAT-CGAACCCGGTCTCAGCAATTCCGCTGTCCTCGACAA 1559
||||||||||||||||||| ||| ||| |||||||||||||| ||||||||| ||| |||
Sbjct 1480 GTATAACAATCATTCCGCT-CATTCGAGCCCGGTCTCAGCAACTCCGCTGTCATCGTCAA 1538
Query 1560 CTACAATGAGTAACGGTAACGAAGGGTATGGTGGAAACATAAACTGGATTAATAACAACA 1619
| | | || |||||| || | || ||||||||||||||||||||||||||||||||||
Sbjct 1539 CGA-A-TG-GTAACG--AA-G--GG-TATGGTGGAAACATAAACTGGATTAATAACAACA 1589
Query 1620 TTTCA-AGTTCTTACCAAACTGCAAAATCAAATCTCTCTGTTTTGCACACACCGGTTTTT 1678
||||| | |||||||||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct 1590 TTTCAGA-TTCTTACCAAACTGCAAAGTCTAATCTCTCTGTTTTGCAGACACCAGTTTTT 1648
Query 1679 GGGTTGGAATGA 1690
||||| ||||||
Sbjct 1649 GGGTTAGAATGA 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5